Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02863
(415 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P22706|TRAI2_ECOLI Protein traI (DNA helicase I) 29 4.3
sp|P14565|TRAI1_ECOLI Protein traI (DNA helicase I) [Contai... 29 4.3
sp|Q5VVX9|UBE2U_HUMAN Ubiquitin-conjugating enzyme E2 U (Ub... 29 4.3
sp|P40360|YJH1_YEAST Hypothetical 65.6 kDa protein in SMC3-... 28 7.3
>sp|P22706|TRAI2_ECOLI Protein traI (DNA helicase I)
Length = 1756
Score = 28.9 bits (63), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 271 DVGNTKFVLDTCPTLPITDSASPFLLLVGGGSEEASFTDND 393
D NT F+LD + TD A + L+ GG + D D
Sbjct: 1061 DFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTD 1101
>sp|P14565|TRAI1_ECOLI Protein traI (DNA helicase I) [Contains: Trai* protein]
Length = 1756
Score = 28.9 bits (63), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 271 DVGNTKFVLDTCPTLPITDSASPFLLLVGGGSEEASFTDND 393
D NT F+LD + TD A + L+ GG + D D
Sbjct: 1061 DFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTD 1101
>sp|Q5VVX9|UBE2U_HUMAN Ubiquitin-conjugating enzyme E2 U (Ubiquitin-protein ligase U)
(Ubiquitin carrier protein U)
Length = 321
Score = 28.9 bits (63), Expect = 4.3
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 217 NLKLSVIQHILSGKAMRYDVGNTKFVLDTCPTL-PITD 327
NLK SVI+ L+ K M ++V ++ + CPTL P TD
Sbjct: 224 NLKYSVIKCWLARKRMPHEVTHSMEEIKLCPTLIPTTD 261
>sp|P40360|YJH1_YEAST Hypothetical 65.6 kDa protein in SMC3-MRPL8 intergenic region
Length = 574
Score = 28.1 bits (61), Expect = 7.3
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 160 TEIDLNPMRFKEYHYIADKNLKLSVIQHILSGKAMRYDVGNTKFVLDTCPTLPITDSASP 339
TE DL P+ KE + + + S ++ +D+GN+ F+ P + ++AS
Sbjct: 108 TEADLKPLHLKE----GLTKSRTGLYHSVFSQESRFFDIGNSNFIPIVKPYVYNEETASE 163
Query: 340 FL 345
F+
Sbjct: 164 FM 165
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,580,538
Number of Sequences: 369166
Number of extensions: 763577
Number of successful extensions: 1633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)