Planaria EST Database


DrC_02863

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02863
         (415 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P22706|TRAI2_ECOLI  Protein traI (DNA helicase I)               29   4.3  
sp|P14565|TRAI1_ECOLI  Protein traI (DNA helicase I) [Contai...    29   4.3  
sp|Q5VVX9|UBE2U_HUMAN  Ubiquitin-conjugating enzyme E2 U (Ub...    29   4.3  
sp|P40360|YJH1_YEAST  Hypothetical 65.6 kDa protein in SMC3-...    28   7.3  
>sp|P22706|TRAI2_ECOLI Protein traI (DNA helicase I)
          Length = 1756

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 271  DVGNTKFVLDTCPTLPITDSASPFLLLVGGGSEEASFTDND 393
            D  NT F+LD    +  TD A  + L+  GG    +  D D
Sbjct: 1061 DFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTD 1101
>sp|P14565|TRAI1_ECOLI Protein traI (DNA helicase I) [Contains: Trai* protein]
          Length = 1756

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 271  DVGNTKFVLDTCPTLPITDSASPFLLLVGGGSEEASFTDND 393
            D  NT F+LD    +  TD A  + L+  GG    +  D D
Sbjct: 1061 DFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTD 1101
>sp|Q5VVX9|UBE2U_HUMAN Ubiquitin-conjugating enzyme E2 U (Ubiquitin-protein ligase U)
           (Ubiquitin carrier protein U)
          Length = 321

 Score = 28.9 bits (63), Expect = 4.3
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 217 NLKLSVIQHILSGKAMRYDVGNTKFVLDTCPTL-PITD 327
           NLK SVI+  L+ K M ++V ++   +  CPTL P TD
Sbjct: 224 NLKYSVIKCWLARKRMPHEVTHSMEEIKLCPTLIPTTD 261
>sp|P40360|YJH1_YEAST Hypothetical 65.6 kDa protein in SMC3-MRPL8 intergenic region
          Length = 574

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +1

Query: 160 TEIDLNPMRFKEYHYIADKNLKLSVIQHILSGKAMRYDVGNTKFVLDTCPTLPITDSASP 339
           TE DL P+  KE         +  +   + S ++  +D+GN+ F+    P +   ++AS 
Sbjct: 108 TEADLKPLHLKE----GLTKSRTGLYHSVFSQESRFFDIGNSNFIPIVKPYVYNEETASE 163

Query: 340 FL 345
           F+
Sbjct: 164 FM 165
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,580,538
Number of Sequences: 369166
Number of extensions: 763577
Number of successful extensions: 1633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1633
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)