Planaria EST Database


DrC_02846

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02846
         (538 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q29504|UBE1_RABIT  Ubiquitin-activating enzyme E1              224   1e-58
sp|P22314|UBE1_HUMAN  Ubiquitin-activating enzyme E1 (A1S9 p...   221   9e-58
sp|Q02053|UBE1_MOUSE  Ubiquitin-activating enzyme E1 1            221   9e-58
sp|O94609|UBA1_SCHPO  Ubiquitin-activating enzyme E1 1 (Poly...   216   4e-56
sp|P22515|UBA1_YEAST  Ubiquitin-activating enzyme E1 1            199   4e-51
sp|P31255|UBE1Y_MACRU  Ubiquitin-activating enzyme E1 Y           174   9e-44
sp|P31252|UBE13_WHEAT  Ubiquitin-activating enzyme E1 3           173   2e-43
sp|P20973|UBE11_WHEAT  Ubiquitin-activating enzyme E1 1           171   1e-42
sp|P31251|UBE12_WHEAT  Ubiquitin-activating enzyme E1 2           171   1e-42
sp|P31253|UBE1X_MOUSE  Ubiquitin-activating enzyme E1 X           164   1e-40
>sp|Q29504|UBE1_RABIT Ubiquitin-activating enzyme E1
          Length = 1058

 Score =  224 bits (570), Expect = 1e-58
 Identities = 108/182 (59%), Positives = 131/182 (71%), Gaps = 4/182 (2%)
 Frame = +1

Query: 1    VEAGQYMDRRCVFYLKPLLESGTLGTKCNVQVVLPHLTESYSSSPDPPEKSIPVCTLKNF 180
            V+A  YMDRRCV+Y KPLLESGTLGTK NVQVV+P LTESYSSS DPPEKSIP+CTLKNF
Sbjct: 578  VDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNF 637

Query: 181  PYTIEHTIQWARDLFEGLFSQPAASANQFLSDKQRFLDSVSKCHSSDTGEQVS----NIV 348
            P  IEHT+QWARD FEGLF QPA + NQ+L+D  +F++   +   +   E +     ++V
Sbjct: 638  PNAIEHTLQWARDEFEGLFKQPAENVNQYLTD-PKFVERTLRLAGTQPLEVLEAVQRSLV 696

Query: 349  YNIPTSFNDCLFWARKLWQEHFHNNIKQLLHNFPSDADTSRDLPFWSGTKRCPKPIIFDI 528
              +P S+ DC+ WA   W   + NNI+QLLHNFP D  TS   PFWSG KRCP P+ FD+
Sbjct: 697  LQLPQSWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDV 756

Query: 529  DN 534
             N
Sbjct: 757  SN 758
>sp|P22314|UBE1_HUMAN Ubiquitin-activating enzyme E1 (A1S9 protein)
          Length = 1058

 Score =  221 bits (563), Expect = 9e-58
 Identities = 107/182 (58%), Positives = 131/182 (71%), Gaps = 4/182 (2%)
 Frame = +1

Query: 1    VEAGQYMDRRCVFYLKPLLESGTLGTKCNVQVVLPHLTESYSSSPDPPEKSIPVCTLKNF 180
            V+A  YMDRRCV+Y KPLLESGTLGTK NVQVV+P LTESYSSS DPPEKSIP+CTLKNF
Sbjct: 578  VDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNF 637

Query: 181  PYTIEHTIQWARDLFEGLFSQPAASANQFLSDKQRFLDSVSKCHSSDTGEQVS----NIV 348
            P  IEHT+QWARD FEGLF QPA + NQ+L+D  +F++   +   +   E +     ++V
Sbjct: 638  PNAIEHTLQWARDEFEGLFKQPAENVNQYLTD-PKFVERTLRLAGTQPLEVLEAVQRSLV 696

Query: 349  YNIPTSFNDCLFWARKLWQEHFHNNIKQLLHNFPSDADTSRDLPFWSGTKRCPKPIIFDI 528
               P ++ DC+ WA   W   + NNI+QLLHNFP D  TS   PFWSG KRCP P+ FD+
Sbjct: 697  LQRPQTWADCVTWACHHWHTQYSNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDV 756

Query: 529  DN 534
            +N
Sbjct: 757  NN 758
>sp|Q02053|UBE1_MOUSE Ubiquitin-activating enzyme E1 1
          Length = 1058

 Score =  221 bits (563), Expect = 9e-58
 Identities = 106/182 (58%), Positives = 131/182 (71%), Gaps = 4/182 (2%)
 Frame = +1

Query: 1    VEAGQYMDRRCVFYLKPLLESGTLGTKCNVQVVLPHLTESYSSSPDPPEKSIPVCTLKNF 180
            ++A  YMDRRCV+Y KPLLESGTLGTK NVQVV+P LTESYSSS DPPEKSIP+CTLKNF
Sbjct: 578  IDARMYMDRRCVYYRKPLLESGTLGTKGNVQVVIPFLTESYSSSQDPPEKSIPICTLKNF 637

Query: 181  PYTIEHTIQWARDLFEGLFSQPAASANQFLSDKQRFLDSVSKCHSSDTGEQVS----NIV 348
            P  IEHT+QWARD FEGLF QPA + NQ+L+D  +F++   +   +   E +     ++V
Sbjct: 638  PNAIEHTLQWARDEFEGLFKQPAENVNQYLTD-SKFVERTLRLAGTQPLEVLEAVQRSLV 696

Query: 349  YNIPTSFNDCLFWARKLWQEHFHNNIKQLLHNFPSDADTSRDLPFWSGTKRCPKPIIFDI 528
               P ++ DC+ WA   W   + NNI+QLLHNFP D  TS   PFWSG KRCP P+ FD+
Sbjct: 697  LQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQLTSSGAPFWSGPKRCPHPLTFDV 756

Query: 529  DN 534
            +N
Sbjct: 757  NN 758
>sp|O94609|UBA1_SCHPO Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport protein 3)
          Length = 1012

 Score =  216 bits (549), Expect = 4e-56
 Identities = 111/182 (60%), Positives = 129/182 (70%), Gaps = 4/182 (2%)
 Frame = +1

Query: 1    VEAGQYMDRRCVFYLKPLLESGTLGTKCNVQVVLPHLTESYSSSPDPPEKSIPVCTLKNF 180
            VEA  Y+DRRCVF+ KPLLESGTLGTK N QVV+PHLTESY SS DPPEKS P+CTLKNF
Sbjct: 539  VEARMYVDRRCVFFEKPLLESGTLGTKGNTQVVVPHLTESYGSSQDPPEKSFPICTLKNF 598

Query: 181  PYTIEHTIQWARDLFEGLFSQPAASANQFLSDKQRFLDSVSKCHSSDTGEQVSNI----V 348
            P  IEHTI WARDLFEGLF QP  + N +LS    FL++  K  SS+  E + NI    V
Sbjct: 599  PNRIEHTIAWARDLFEGLFKQPIDNVNMYLS-SPNFLETSLKT-SSNpreVLENIRDYLV 656

Query: 349  YNIPTSFNDCLFWARKLWQEHFHNNIKQLLHNFPSDADTSRDLPFWSGTKRCPKPIIFDI 528
               P SF +C+ WAR  + + F+NNI+QLL NFP D+ TS   PFWSG KR P P+ FDI
Sbjct: 657  TEKPLSFEECIMWARLQFDKFFNNNIQQLLFNFPKDSVTSTGQPFWSGPKRAPTPLSFDI 716

Query: 529  DN 534
             N
Sbjct: 717  HN 718
>sp|P22515|UBA1_YEAST Ubiquitin-activating enzyme E1 1
          Length = 1024

 Score =  199 bits (506), Expect = 4e-51
 Identities = 98/180 (54%), Positives = 128/180 (71%), Gaps = 2/180 (1%)
 Frame = +1

Query: 1    VEAGQYMDRRCVFYLKPLLESGTLGTKCNVQVVLPHLTESYSSSPDPPEKSIPVCTLKNF 180
            V+A  Y+DRRCVFY KPLLESGTLGTK N QV++P LTESYSSS DPPEKSIP+CTL++F
Sbjct: 546  VDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDPPEKSIPLCTLRSF 605

Query: 181  PYTIEHTIQWARDLFEGLFSQPAASANQFLSDKQRFLDSVSKCHSSDTG--EQVSNIVYN 354
            P  I+HTI WA+ LF+G F+  A + N +L+ +  F++   K      G  E +S+ + +
Sbjct: 606  PNKIDHTIAWAKSLFQGYFTDSAENVNMYLT-QPNFVEQTLKQSGDVKGVLESISDSLSS 664

Query: 355  IPTSFNDCLFWARKLWQEHFHNNIKQLLHNFPSDADTSRDLPFWSGTKRCPKPIIFDIDN 534
             P +F DC+ WAR  +++ F+++IKQLL NFP DA TS   PFWSG KR P P+ FDI N
Sbjct: 665  KPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTSNGEPFWSGAKRAPTPLEFDIYN 724
>sp|P31255|UBE1Y_MACRU Ubiquitin-activating enzyme E1 Y
          Length = 152

 Score =  174 bits (442), Expect = 9e-44
 Identities = 85/151 (56%), Positives = 107/151 (70%), Gaps = 4/151 (2%)
 Frame = +1

Query: 16  YMDRRCVFYLKPLLESGTLGTKCNVQVVLPHLTESYSSSPDPPEKSIPVCTLKNFPYTIE 195
           YMDR CV+Y KPLLESGTLGTK N+QVV+P LTESYSSS DPPEKSIP+CTLKNFP  IE
Sbjct: 2   YMDRHCVYYRKPLLESGTLGTKGNIQVVIPFLTESYSSSQDPPEKSIPICTLKNFPNAIE 61

Query: 196 HTIQWARDLFEGLFSQPAASANQFLSDKQRFLDSVSKCHSSDTGEQVS----NIVYNIPT 363
           HT+QWARD FE LF QPA + NQ+L++  +F++   +   +   E +     ++V   P 
Sbjct: 62  HTLQWARDEFESLFKQPAENVNQYLTN-PKFVERTLRLGGTQPLEVLEAVHRSLVLQRPH 120

Query: 364 SFNDCLFWARKLWQEHFHNNIKQLLHNFPSD 456
            + DC+ WA   W   + NNI+QLLHNFP +
Sbjct: 121 DWADCVTWACLHWHSQYANNIRQLLHNFPPE 151
>sp|P31252|UBE13_WHEAT Ubiquitin-activating enzyme E1 3
          Length = 1053

 Score =  173 bits (439), Expect = 2e-43
 Identities = 79/178 (44%), Positives = 114/178 (64%), Gaps = 4/178 (2%)
 Frame = +1

Query: 1    VEAGQYMDRRCVFYLKPLLESGTLGTKCNVQVVLPHLTESYSSSPDPPEKSIPVCTLKNF 180
            V A  YMD RC+++ KPLLESGTLG KCN+Q+V+PHLTE+Y +S DPPEK  P+CT+ +F
Sbjct: 575  VNARMYMDMRCLYFQKPLLESGTLGAKCNIQMVIPHLTENYGASRDPPEKQAPMCTVHSF 634

Query: 181  PYTIEHTIQWARDLFEGLFSQPAASANQFLSDKQRFLDSVSKCHSSDTGEQVSNIVYNIP 360
            P+ I+H + WAR  FEGL  +     N FLS+  ++  ++ K   +   E +  +   + 
Sbjct: 635  PHNIDHCLTWARSEFEGLLEKTPNEVNSFLSNPAQYAAAMRKAGDAQARELLERVSECLN 694

Query: 361  ----TSFNDCLFWARKLWQEHFHNNIKQLLHNFPSDADTSRDLPFWSGTKRCPKPIIF 522
                ++F+DC+ WAR  ++++F N +KQL   FP DA TS   PFWS  KR P+ + F
Sbjct: 695  KDRCSTFDDCISWARLKFEDYFSNRVKQLTFTFPEDAATSMGAPFWSAPKRFPRALQF 752
>sp|P20973|UBE11_WHEAT Ubiquitin-activating enzyme E1 1
          Length = 1051

 Score =  171 bits (433), Expect = 1e-42
 Identities = 77/178 (43%), Positives = 111/178 (62%), Gaps = 4/178 (2%)
 Frame = +1

Query: 1    VEAGQYMDRRCVFYLKPLLESGTLGTKCNVQVVLPHLTESYSSSPDPPEKSIPVCTLKNF 180
            V A  Y+D RCV++ KPLLESGTLG KCN Q+V+PHLTE+Y +S DPPEK  P+CT+ +F
Sbjct: 572  VTARMYIDSRCVYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSF 631

Query: 181  PYTIEHTIQWARDLFEGLFSQPAASANQFLSDKQRFLDSVSKCHSSDTGEQVSNIVYNIP 360
            P+ I+H + WAR  FEGL  +     N FLS+   ++ +      +   +Q+  ++  + 
Sbjct: 632  PHNIDHCLTWARSEFEGLLEKTPTEVNAFLSNPTTYISAARTAGDAQARDQLERVIECLD 691

Query: 361  ----TSFNDCLFWARKLWQEHFHNNIKQLLHNFPSDADTSRDLPFWSGTKRCPKPIIF 522
                 +F D + WAR  ++++F N +KQL   FP D+ TS   PFWS  KR P+P+ F
Sbjct: 692  RDKCETFQDSITWARLKFEDYFSNRVKQLTFTFPEDSMTSSGAPFWSAPKRFPRPVEF 749
>sp|P31251|UBE12_WHEAT Ubiquitin-activating enzyme E1 2
          Length = 1051

 Score =  171 bits (433), Expect = 1e-42
 Identities = 77/178 (43%), Positives = 111/178 (62%), Gaps = 4/178 (2%)
 Frame = +1

Query: 1    VEAGQYMDRRCVFYLKPLLESGTLGTKCNVQVVLPHLTESYSSSPDPPEKSIPVCTLKNF 180
            V A  Y+D RCV++ KPLLESGTLG KCN Q+V+PHLTE+Y +S DPPEK  P+CT+ +F
Sbjct: 572  VTARMYIDSRCVYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSF 631

Query: 181  PYTIEHTIQWARDLFEGLFSQPAASANQFLSDKQRFLDSVSKCHSSDTGEQVSNIVYNIP 360
            P+ I+H + WAR  FEGL  +     N FLS+   ++ +      +   +Q+  ++  + 
Sbjct: 632  PHNIDHCLTWARSEFEGLLEKTPTEVNAFLSNPTTYISAARTAGDAQARDQLERVIECLD 691

Query: 361  ----TSFNDCLFWARKLWQEHFHNNIKQLLHNFPSDADTSRDLPFWSGTKRCPKPIIF 522
                 +F D + WAR  ++++F N +KQL   FP D+ TS   PFWS  KR P+P+ F
Sbjct: 692  RDKCETFQDSITWARLKFEDYFSNRVKQLTFTFPEDSMTSSGAPFWSAPKRFPRPVEF 749
>sp|P31253|UBE1X_MOUSE Ubiquitin-activating enzyme E1 X
          Length = 450

 Score =  164 bits (415), Expect = 1e-40
 Identities = 78/145 (53%), Positives = 99/145 (68%), Gaps = 4/145 (2%)
 Frame = +1

Query: 112 TESYSSSPDPPEKSIPVCTLKNFPYTIEHTIQWARDLFEGLFSQPAASANQFLSDKQRFL 291
           TESYSSS DPPEKSIP+CTLKNFP  IEHT+QWARD FEGLF QPA + NQ+L+D  +F+
Sbjct: 1   TESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDEFEGLFKQPAENVNQYLTD-SKFV 59

Query: 292 DSVSKCHSSDTGEQVS----NIVYNIPTSFNDCLFWARKLWQEHFHNNIKQLLHNFPSDA 459
           +   +   +   E +     ++V   P ++ DC+ WA   W   + NNI+QLLHNFP D 
Sbjct: 60  ERTLRLAGTQPLEVLEAVQRSLVLQRPQTWGDCVTWACHHWHTQYCNNIRQLLHNFPPDQ 119

Query: 460 DTSRDLPFWSGTKRCPKPIIFDIDN 534
            TS   PFWSG KRCP P+ FD++N
Sbjct: 120 LTSSGAPFWSGPKRCPHPLTFDVNN 144
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,171,707
Number of Sequences: 369166
Number of extensions: 1552207
Number of successful extensions: 3817
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3794
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)