Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02839
(469 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DCJ7|AKIP_MOUSE Aurora kinase A-interacting protein (A... 31 1.2
sp|Q9QVY8|RAI2_MOUSE Retinoic acid-induced protein 2 (3f8) 28 7.9
>sp|Q9DCJ7|AKIP_MOUSE Aurora kinase A-interacting protein (AURKA-interacting protein)
Length = 200
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/58 (39%), Positives = 28/58 (48%)
Frame = +2
Query: 77 PLSALSPPHCNAAQSLIWYPRDPNEKLKILVPPKQIIVPWESWLTDMGQNRRLKVQKP 250
PL +L P + A SL R +E + LVP K I P ESWLT R V+ P
Sbjct: 37 PLYSLQPASPSRAASLPG-KRTQSELEEFLVPRKMAISPLESWLTAQYLLPRRNVEVP 93
>sp|Q9QVY8|RAI2_MOUSE Retinoic acid-induced protein 2 (3f8)
Length = 529
Score = 28.5 bits (62), Expect = 7.9
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 53 VLDNCKPLPLSALSPPHCNAAQSLIWYPRDP-NEKLKILVPPKQIIVPW 196
VL N P +L PP C P P N L LVPP ++VP+
Sbjct: 187 VLQNLFPTQ-GSLGPPPCQPPPGYAPVPPQPFNSPLSPLVPPATLLVPY 234
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,228,671
Number of Sequences: 369166
Number of extensions: 881893
Number of successful extensions: 1925
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1925
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)