Planaria EST Database


DrC_02839

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02839
         (469 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DCJ7|AKIP_MOUSE  Aurora kinase A-interacting protein (A...    31   1.2  
sp|Q9QVY8|RAI2_MOUSE  Retinoic acid-induced protein 2 (3f8)        28   7.9  
>sp|Q9DCJ7|AKIP_MOUSE Aurora kinase A-interacting protein (AURKA-interacting protein)
          Length = 200

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/58 (39%), Positives = 28/58 (48%)
 Frame = +2

Query: 77  PLSALSPPHCNAAQSLIWYPRDPNEKLKILVPPKQIIVPWESWLTDMGQNRRLKVQKP 250
           PL +L P   + A SL    R  +E  + LVP K  I P ESWLT      R  V+ P
Sbjct: 37  PLYSLQPASPSRAASLPG-KRTQSELEEFLVPRKMAISPLESWLTAQYLLPRRNVEVP 93
>sp|Q9QVY8|RAI2_MOUSE Retinoic acid-induced protein 2 (3f8)
          Length = 529

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 53  VLDNCKPLPLSALSPPHCNAAQSLIWYPRDP-NEKLKILVPPKQIIVPW 196
           VL N  P    +L PP C         P  P N  L  LVPP  ++VP+
Sbjct: 187 VLQNLFPTQ-GSLGPPPCQPPPGYAPVPPQPFNSPLSPLVPPATLLVPY 234
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,228,671
Number of Sequences: 369166
Number of extensions: 881893
Number of successful extensions: 1925
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1925
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)