Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02832
(695 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6LXB3|APGM_METMP 2,3-bisphosphoglycerate-independent ph... 35 0.19
sp|P82970|NSBP1_HUMAN Nucleosomal binding protein 1 32 1.6
sp|Q9QXL1|KI21B_MOUSE Kinesin family member 21B (Kinesin-li... 30 4.7
sp|Q9VYB0|BTHD_DROME Selenoprotein BthD precursor (dSelM) 30 4.7
sp|O75037|KI21B_HUMAN Kinesin family member 21B 30 6.1
>sp|Q6LXB3|APGM_METMP 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
(Phosphoglyceromutase) (BPG-independent PGAM) (aPGAM)
Length = 406
Score = 35.0 bits (79), Expect = 0.19
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
Frame = +1
Query: 160 KQKSDAHPVDEGKEKKQSKEIIN-----TEQKTDIHTANEE--KINVP 282
K+ + HP+D+ KE K++ EI+N +K D H NEE K N+P
Sbjct: 166 KKVKEIHPLDDSKEAKKTAEIVNKLLKIAYEKLDKHPVNEERRKQNLP 213
>sp|P82970|NSBP1_HUMAN Nucleosomal binding protein 1
Length = 282
Score = 32.0 bits (71), Expect = 1.6
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +1
Query: 4 DGKPTKPGNSSAEGKNKSDKQQ-EDKTNKTDXXXXXXXXXXXXXXQETTSFGQKQKSDAH 180
D K T G + +GK K DK++ +D K D +E K+K D
Sbjct: 201 DRKETGDGKENEDGKEKGDKKEGKDVKVKEDEKEREDGKEDEGGNEEEAG---KEKEDLK 257
Query: 181 PVDEGKEKKQSKE 219
+EGKE+ + KE
Sbjct: 258 EEEEGKEEDEIKE 270
Score = 30.0 bits (66), Expect = 6.1
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 DGKPTKPGNSSAE-GKNKSD--KQQEDKTNKTDXXXXXXXXXXXXXXQETTSFGQKQKSD 174
DGK K GN E K K D K ++ K N D + +K++ D
Sbjct: 156 DGKEDKNGNEKGEDAKEKEDGKKGEDGKGNGEDG--------------KEKGEDEKEEED 201
Query: 175 AHPVDEGKEKKQSKEIINTEQKTDIHTANEEK 270
+GKE + KE + ++ D+ +EK
Sbjct: 202 RKETGDGKENEDGKEKGDKKEGKDVKVKEDEK 233
>sp|Q9QXL1|KI21B_MOUSE Kinesin family member 21B (Kinesin-like protein KIF6)
Length = 1668
Score = 30.4 bits (67), Expect = 4.7
Identities = 11/60 (18%), Positives = 36/60 (60%)
Frame = +2
Query: 2 QMANQQNPEIPVPKERTNQINNRRIKQTKQIRNLKRVRRKRQNRPKKLQALDKNRNQMLI 181
++A + ++ + K+ + RR+ +TK+ R + +++++++ + +++AL+ + Q I
Sbjct: 752 EVAEMKKAKVALMKQMREEQQRRRLVETKRNREIAQLKKEQRRQEFQIRALESQKRQQEI 811
>sp|Q9VYB0|BTHD_DROME Selenoprotein BthD precursor (dSelM)
Length = 249
Score = 30.4 bits (67), Expect = 4.7
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 22 PGNSSAEGKNKSDKQQEDKTNKTDXXXXXXXXXXXXXXQETTSFGQKQKSDAHPVD-EGK 198
PG+ + KS+ +E + NK + ++QKS+ P + K
Sbjct: 140 PGSEAIASPKKSESTEEAQENKAPTST-----------STSRKSKKEQKSEEEPTQVDSK 188
Query: 199 EKKQSKEIINTEQK 240
E KQSKE++ T+++
Sbjct: 189 EAKQSKELVKTKRQ 202
>sp|O75037|KI21B_HUMAN Kinesin family member 21B
Length = 1637
Score = 30.0 bits (66), Expect = 6.1
Identities = 10/57 (17%), Positives = 35/57 (61%)
Frame = +2
Query: 2 QMANQQNPEIPVPKERTNQINNRRIKQTKQIRNLKRVRRKRQNRPKKLQALDKNRNQ 172
++A + ++ + K+ + RR+ +TK+ R + +++++++ + +++AL+ + Q
Sbjct: 751 EVAEMKKAKVALMKQMREEQQRRRLVETKRNREIAQLKKEQRRQEFQIRALESQKRQ 807
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.312 0.131 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,530,694
Number of Sequences: 369166
Number of extensions: 1038768
Number of successful extensions: 2732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2720
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)