Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02826
(576 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q28690|EI2BB_RABIT Translation initiation factor eIF-2B ... 30 3.3
sp|P43142|ADMR_MOUSE Adrenomedullin receptor (AM-R) (G10D) ... 29 7.4
>sp|Q28690|EI2BB_RABIT Translation initiation factor eIF-2B beta subunit (eIF-2B GDP-GTP
exchange factor)
Length = 351
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 158 CHCNRSTHPPPLRGDKTMSNIGNNAQIYIC-IMQHIYTLEQH 36
CHC + PP +SNIG NA YI +M +Y E H
Sbjct: 308 CHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELYHPEDH 349
>sp|P43142|ADMR_MOUSE Adrenomedullin receptor (AM-R) (G10D) (NOW)
Length = 395
Score = 29.3 bits (64), Expect = 7.4
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 183 LIYTTTRSLPLQQVDTPTPAE 121
+I T SLPLQ++ TPTP+E
Sbjct: 357 IIITKEGSLPLQRISTPTPSE 377
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,490,595
Number of Sequences: 369166
Number of extensions: 1286890
Number of successful extensions: 3326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3322
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)