Planaria EST Database


DrC_02826

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02826
         (576 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q28690|EI2BB_RABIT  Translation initiation factor eIF-2B ...    30   3.3  
sp|P43142|ADMR_MOUSE  Adrenomedullin receptor (AM-R) (G10D) ...    29   7.4  
>sp|Q28690|EI2BB_RABIT Translation initiation factor eIF-2B beta subunit (eIF-2B GDP-GTP
           exchange factor)
          Length = 351

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 158 CHCNRSTHPPPLRGDKTMSNIGNNAQIYIC-IMQHIYTLEQH 36
           CHC    + PP      +SNIG NA  YI  +M  +Y  E H
Sbjct: 308 CHCPVFDYVPPELITLFISNIGGNAPSYIYRLMSELYHPEDH 349
>sp|P43142|ADMR_MOUSE Adrenomedullin receptor (AM-R) (G10D) (NOW)
          Length = 395

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 183 LIYTTTRSLPLQQVDTPTPAE 121
           +I T   SLPLQ++ TPTP+E
Sbjct: 357 IIITKEGSLPLQRISTPTPSE 377
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,490,595
Number of Sequences: 369166
Number of extensions: 1286890
Number of successful extensions: 3326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3322
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)