Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02817
(330 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34624|YOJ1_CAEEL Hypothetical protein ZK353.1 in chromo... 70 2e-12
sp|Q8BGU5|CFP1_MOUSE Cyclin fold protein 1 69 3e-12
sp|Q8ND76|CFP1_HUMAN Cyclin fold protein 1 (Cyclin-box prot... 69 3e-12
sp|Q7V2K9|KGUA_PROMP Guanylate kinase (GMP kinase) 30 1.7
sp|P23372|VE08_VACCV Protein E8 30 2.2
sp|P21049|VE08_VACCC Protein E8 30 2.2
sp|P54729|NUB1_MOUSE NEDD8 ultimate buster-1 (BS4 protein) 28 6.4
sp|P33820|VE08_VARV Protein E8 28 6.4
sp|Q14781|CBX2_HUMAN Chromobox protein homolog 2 28 6.4
sp|Q9XI80|FUT6_ARATH Probable fucosyltransferase 6 (AtFUT6) 28 6.4
>sp|P34624|YOJ1_CAEEL Hypothetical protein ZK353.1 in chromosome III
Length = 357
Score = 69.7 bits (169), Expect = 2e-12
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Frame = +3
Query: 3 HISERE-PEDVEHDPSINAKHPTLFLKRSKEDIENNLQRRRL----------EKEKLVPR 149
HISERE E E DPS N F++RSK +++ RR ++PR
Sbjct: 53 HISEREVTEGYEEDPSTNPTARPTFMERSKSEMKLKDNRRSCYMLDALAAGGHHPGILPR 112
Query: 150 GLSRWSSCSTILLDDTTISQPNPALSLKALALAIHLHVRNDDNPNDQR 293
L + SSCSTI +DD+T+SQP+ ++K ++LAI+ H+ N N +R
Sbjct: 113 SLRKSSSCSTIYIDDSTVSQPHLKNTIKCISLAIYYHISNRKNRGHER 160
>sp|Q8BGU5|CFP1_MOUSE Cyclin fold protein 1
Length = 341
Score = 69.3 bits (168), Expect = 3e-12
Identities = 41/95 (43%), Positives = 61/95 (64%), Gaps = 4/95 (4%)
Frame = +3
Query: 3 HISEREPED---VEHDPSINAKHPTLFLKRSKEDIENNLQRRRLEKEKLVPRGLSR-WSS 170
HIS+RE D +E +PS + + T+FL +S+ D+ +R+ L P SR +SS
Sbjct: 43 HISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVRE--KRKSLFINHHPPGQTSRKYSS 100
Query: 171 CSTILLDDTTISQPNPALSLKALALAIHLHVRNDD 275
CSTI LDD+T+SQPN ++K +ALAI+ H++N D
Sbjct: 101 CSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRD 135
>sp|Q8ND76|CFP1_HUMAN Cyclin fold protein 1 (Cyclin-box protein 1)
Length = 341
Score = 69.3 bits (168), Expect = 3e-12
Identities = 40/95 (42%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Frame = +3
Query: 3 HISEREPED---VEHDPSINAKHPTLFLKRSKEDIENNLQRRRLEKEKLVPRGLSR-WSS 170
HIS+RE D +E +PS + + T+FL +S+ D+ +R+ L P ++R +SS
Sbjct: 43 HISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVRE--KRKSLFINHHPPGQIARKYSS 100
Query: 171 CSTILLDDTTISQPNPALSLKALALAIHLHVRNDD 275
CSTI LDD+T+SQPN ++K +ALAI+ H++N D
Sbjct: 101 CSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRD 135
>sp|Q7V2K9|KGUA_PROMP Guanylate kinase (GMP kinase)
Length = 184
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +3
Query: 27 DVEHDPSINAKHPT----LFLKRSKEDIENNLQRRRLEKEKLVPRGLSR 161
+VE I K P L SKE++E ++ R EKE+ + R LSR
Sbjct: 103 EVEGAKQIKEKFPESLSIFLLPPSKEELEKRIRNRGTEKEEAIDRRLSR 151
>sp|P23372|VE08_VACCV Protein E8
Length = 273
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 90 EDIENNLQRRRLEKEKLVPRGLSRWSSCSTILLDD 194
+D+ N QRR L++E RGLSR +T L D+
Sbjct: 9 DDVYKNAQRRILDQETFFSRGLSRPLMKNTYLFDN 43
>sp|P21049|VE08_VACCC Protein E8
Length = 273
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 90 EDIENNLQRRRLEKEKLVPRGLSRWSSCSTILLDD 194
+D+ N QRR L++E RGLSR +T L D+
Sbjct: 9 DDVYKNAQRRILDQETFFSRGLSRPLMKNTYLFDN 43
>sp|P54729|NUB1_MOUSE NEDD8 ultimate buster-1 (BS4 protein)
Length = 614
Score = 28.1 bits (61), Expect = 6.4
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 23/104 (22%)
Frame = +3
Query: 18 EPEDVEHDPSINAKHPTLFLKRSKEDIENNLQ------------RRRLEKEKLVPRGLSR 161
E + V H N K L LK+S+ED+ NLQ RR+++ K RGL
Sbjct: 144 EEQGVTH----NVKAMVLELKQSEEDVRKNLQLEEEEQNEAELKERRIQRTK---RGLEI 196
Query: 162 WSSCSTILLDDTTI-----------SQPNPALSLKALALAIHLH 260
+ + +++D T+ S P KAL LA+ H
Sbjct: 197 LAERAEMVVDPETMPYLDIANQTGRSLRIPPAERKALMLAMGYH 240
>sp|P33820|VE08_VARV Protein E8
Length = 273
Score = 28.1 bits (61), Expect = 6.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 90 EDIENNLQRRRLEKEKLVPRGLSRWSSCSTILLDD 194
+D+ N QRR L++E RGL R +T L D+
Sbjct: 9 DDVYKNAQRRILDQETFFSRGLGRPLMKNTYLFDN 43
>sp|Q14781|CBX2_HUMAN Chromobox protein homolog 2
Length = 532
Score = 28.1 bits (61), Expect = 6.4
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 39 DPSINAKHPTLFLKRSKEDIENNLQ-RRRLEKEKLVPRGLSRWSSCS 176
+P N P L L K++ E +Q R+R ++ + PR L+ SSCS
Sbjct: 44 EPEENILDPRLLLAFQKKEHEKEVQNRKRGKRPRGRPRKLTAMSSCS 90
>sp|Q9XI80|FUT6_ARATH Probable fucosyltransferase 6 (AtFUT6)
Length = 537
Score = 28.1 bits (61), Expect = 6.4
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +3
Query: 213 NPALSLKALALAIHLHVRNDDNPNDQRYRCSRDDSV 320
N A++ + ++LH+ +D ND+ + C +D S+
Sbjct: 227 NQAINSTLIPPHLYLHILHDSRDNDKMFFCQKDQSL 262
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,262,486
Number of Sequences: 369166
Number of extensions: 657064
Number of successful extensions: 1717
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1672315150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)