Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02807
(197 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25886|RL29_RAT 60S ribosomal protein L29 (P23) 94 1e-19
sp|P47914|RL29_HUMAN 60S ribosomal protein L29 (Cell surfac... 94 1e-19
sp|P47915|RL29_MOUSE 60S ribosomal protein L29 94 1e-19
sp|Q95281|RL29_PIG 60S ribosomal protein L29 94 1e-19
sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29 94 1e-19
sp|Q24154|RL29_DROME 60S ribosomal protein L29 (L43) 77 2e-14
sp|P05747|RL29_YEAST 60S ribosomal protein L29 (YL43) 76 3e-14
sp|Q92366|RL29_SCHPO 60S ribosomal protein L29 (L43) 75 4e-14
sp|P39734|YAC8_YEAST Hypothetical 58.8 kDa protein in MYO4-... 32 0.60
>sp|P25886|RL29_RAT 60S ribosomal protein L29 (P23)
Length = 156
Score = 94.0 bits (232), Expect = 1e-19
Identities = 42/52 (80%), Positives = 47/52 (90%)
Frame = +2
Query: 14 MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
MAKSKNHT+HNQ++K H+NGIKKP QRY SLKGVDPKFL+NMRFA KHNKK
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|P47914|RL29_HUMAN 60S ribosomal protein L29 (Cell surface heparin binding protein
HIP)
Length = 159
Score = 94.0 bits (232), Expect = 1e-19
Identities = 42/52 (80%), Positives = 47/52 (90%)
Frame = +2
Query: 14 MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
MAKSKNHT+HNQ++K H+NGIKKP QRY SLKGVDPKFL+NMRFA KHNKK
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|P47915|RL29_MOUSE 60S ribosomal protein L29
Length = 160
Score = 94.0 bits (232), Expect = 1e-19
Identities = 42/52 (80%), Positives = 47/52 (90%)
Frame = +2
Query: 14 MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
MAKSKNHT+HNQ++K H+NGIKKP QRY SLKGVDPKFL+NMRFA KHNKK
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|Q95281|RL29_PIG 60S ribosomal protein L29
Length = 160
Score = 94.0 bits (232), Expect = 1e-19
Identities = 42/52 (80%), Positives = 47/52 (90%)
Frame = +2
Query: 14 MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
MAKSKNHT+HNQ++K H+NGIKKP QRY SLKGVDPKFL+NMRFA KHNKK
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29
Length = 157
Score = 94.0 bits (232), Expect = 1e-19
Identities = 42/52 (80%), Positives = 47/52 (90%)
Frame = +2
Query: 14 MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
MAKSKNHT+HNQ++K H+NGIKKP QRY SLKGVDPKFL+NMRFA KHNKK
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|Q24154|RL29_DROME 60S ribosomal protein L29 (L43)
Length = 76
Score = 76.6 bits (187), Expect = 2e-14
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = +2
Query: 14 MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHN 163
MAKSKNHT+HNQNKKAH+NGIK+P+R+R+ S G+D KFL N R+A K N
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGN 50
>sp|P05747|RL29_YEAST 60S ribosomal protein L29 (YL43)
Length = 59
Score = 75.9 bits (185), Expect = 3e-14
Identities = 33/46 (71%), Positives = 39/46 (84%)
Frame = +2
Query: 14 MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFA 151
MAKSKNHT+HNQ +KAH+NGIKKP +YPSLKGVDPKF +N + A
Sbjct: 1 MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46
>sp|Q92366|RL29_SCHPO 60S ribosomal protein L29 (L43)
Length = 61
Score = 75.5 bits (184), Expect = 4e-14
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = +2
Query: 14 MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANK 157
MAKSKNHT+HNQNKKAH+NGIK+P + RY SLK D KF +N +FAN+
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANR 48
>sp|P39734|YAC8_YEAST Hypothetical 58.8 kDa protein in MYO4-DRS2 intergenic region
Length = 528
Score = 31.6 bits (70), Expect = 0.60
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 11 KMAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
KM +++ H +H K K G+K P R K + +FLK+M ++ K
Sbjct: 166 KMLQAQQHPAHRHYKDNDKYGLKSPSRSFVKDKKRLVHRFLKSMEPSSSGQSK 218
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,838,116
Number of Sequences: 369166
Number of extensions: 244824
Number of successful extensions: 786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)