Planaria EST Database


DrC_02807

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02807
         (197 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P25886|RL29_RAT  60S ribosomal protein L29 (P23)                94   1e-19
sp|P47914|RL29_HUMAN  60S ribosomal protein L29 (Cell surfac...    94   1e-19
sp|P47915|RL29_MOUSE  60S ribosomal protein L29                    94   1e-19
sp|Q95281|RL29_PIG  60S ribosomal protein L29                      94   1e-19
sp|Q8HXB8|RL29_MACFA  60S ribosomal protein L29                    94   1e-19
sp|Q24154|RL29_DROME  60S ribosomal protein L29 (L43)              77   2e-14
sp|P05747|RL29_YEAST  60S ribosomal protein L29 (YL43)             76   3e-14
sp|Q92366|RL29_SCHPO  60S ribosomal protein L29 (L43)              75   4e-14
sp|P39734|YAC8_YEAST  Hypothetical 58.8 kDa protein in MYO4-...    32   0.60 
>sp|P25886|RL29_RAT 60S ribosomal protein L29 (P23)
          Length = 156

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 42/52 (80%), Positives = 47/52 (90%)
 Frame = +2

Query: 14  MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
           MAKSKNHT+HNQ++K H+NGIKKP  QRY SLKGVDPKFL+NMRFA KHNKK
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|P47914|RL29_HUMAN 60S ribosomal protein L29 (Cell surface heparin binding protein
           HIP)
          Length = 159

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 42/52 (80%), Positives = 47/52 (90%)
 Frame = +2

Query: 14  MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
           MAKSKNHT+HNQ++K H+NGIKKP  QRY SLKGVDPKFL+NMRFA KHNKK
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|P47915|RL29_MOUSE 60S ribosomal protein L29
          Length = 160

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 42/52 (80%), Positives = 47/52 (90%)
 Frame = +2

Query: 14  MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
           MAKSKNHT+HNQ++K H+NGIKKP  QRY SLKGVDPKFL+NMRFA KHNKK
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|Q95281|RL29_PIG 60S ribosomal protein L29
          Length = 160

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 42/52 (80%), Positives = 47/52 (90%)
 Frame = +2

Query: 14  MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
           MAKSKNHT+HNQ++K H+NGIKKP  QRY SLKGVDPKFL+NMRFA KHNKK
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|Q8HXB8|RL29_MACFA 60S ribosomal protein L29
          Length = 157

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 42/52 (80%), Positives = 47/52 (90%)
 Frame = +2

Query: 14  MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
           MAKSKNHT+HNQ++K H+NGIKKP  QRY SLKGVDPKFL+NMRFA KHNKK
Sbjct: 1   MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52
>sp|Q24154|RL29_DROME 60S ribosomal protein L29 (L43)
          Length = 76

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 34/50 (68%), Positives = 42/50 (84%)
 Frame = +2

Query: 14  MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHN 163
           MAKSKNHT+HNQNKKAH+NGIK+P+R+R+ S  G+D KFL N R+A K N
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGN 50
>sp|P05747|RL29_YEAST 60S ribosomal protein L29 (YL43)
          Length = 59

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 33/46 (71%), Positives = 39/46 (84%)
 Frame = +2

Query: 14  MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFA 151
           MAKSKNHT+HNQ +KAH+NGIKKP   +YPSLKGVDPKF +N + A
Sbjct: 1   MAKSKNHTAHNQTRKAHRNGIKKPKTYKYPSLKGVDPKFRRNHKHA 46
>sp|Q92366|RL29_SCHPO 60S ribosomal protein L29 (L43)
          Length = 61

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 33/48 (68%), Positives = 40/48 (83%)
 Frame = +2

Query: 14  MAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANK 157
           MAKSKNHT+HNQNKKAH+NGIK+P + RY SLK  D KF +N +FAN+
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANR 48
>sp|P39734|YAC8_YEAST Hypothetical 58.8 kDa protein in MYO4-DRS2 intergenic region
          Length = 528

 Score = 31.6 bits (70), Expect = 0.60
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +2

Query: 11  KMAKSKNHTSHNQNKKAHKNGIKKPMRQRYPSLKGVDPKFLKNMRFANKHNKK 169
           KM +++ H +H   K   K G+K P R      K +  +FLK+M  ++    K
Sbjct: 166 KMLQAQQHPAHRHYKDNDKYGLKSPSRSFVKDKKRLVHRFLKSMEPSSSGQSK 218
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,838,116
Number of Sequences: 369166
Number of extensions: 244824
Number of successful extensions: 786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 68,354,980
effective HSP length: 37
effective length of database: 61,519,785
effective search space used: 1722553980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)