Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02802
(627 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q80XN0|BDH_MOUSE D-beta-hydroxybutyrate dehydrogenase, m... 29 8.6
sp|P29147|BDH_RAT D-beta-hydroxybutyrate dehydrogenase, mit... 29 8.6
>sp|Q80XN0|BDH_MOUSE D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor (BDH)
(3-hydroxybutyrate dehydrogenase)
Length = 343
Score = 29.3 bits (64), Expect = 8.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 503 EIVKQHFGNNHF**KLAINNLKCNSNAKNTNFIIQSIFKLLPTMT 369
E+V++ +G +F K+A CNS + +T+ +I ++ L T
Sbjct: 266 EVVRKDYGRKYFDEKIAKMETYCNSGSTDTSSVINAVTHALTAAT 310
>sp|P29147|BDH_RAT D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor (BDH)
(3-hydroxybutyrate dehydrogenase)
Length = 343
Score = 29.3 bits (64), Expect = 8.6
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 503 EIVKQHFGNNHF**KLAINNLKCNSNAKNTNFIIQSIFKLLPTMT 369
E+V++ +G +F K+A CNS + +T+ +I ++ L T
Sbjct: 266 EVVRKDYGKKYFDEKIAKMETYCNSGSTDTSSVINAVTHALTAAT 310
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,289,718
Number of Sequences: 369166
Number of extensions: 766247
Number of successful extensions: 1612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)