Planaria EST Database


DrC_02802

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02802
         (627 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80XN0|BDH_MOUSE  D-beta-hydroxybutyrate dehydrogenase, m...    29   8.6  
sp|P29147|BDH_RAT  D-beta-hydroxybutyrate dehydrogenase, mit...    29   8.6  
>sp|Q80XN0|BDH_MOUSE D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor (BDH)
           (3-hydroxybutyrate dehydrogenase)
          Length = 343

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 503 EIVKQHFGNNHF**KLAINNLKCNSNAKNTNFIIQSIFKLLPTMT 369
           E+V++ +G  +F  K+A     CNS + +T+ +I ++   L   T
Sbjct: 266 EVVRKDYGRKYFDEKIAKMETYCNSGSTDTSSVINAVTHALTAAT 310
>sp|P29147|BDH_RAT D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor (BDH)
           (3-hydroxybutyrate dehydrogenase)
          Length = 343

 Score = 29.3 bits (64), Expect = 8.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 503 EIVKQHFGNNHF**KLAINNLKCNSNAKNTNFIIQSIFKLLPTMT 369
           E+V++ +G  +F  K+A     CNS + +T+ +I ++   L   T
Sbjct: 266 EVVRKDYGKKYFDEKIAKMETYCNSGSTDTSSVINAVTHALTAAT 310
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,289,718
Number of Sequences: 369166
Number of extensions: 766247
Number of successful extensions: 1612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1612
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)