Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02799
(838 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O78449|YC80_GUITH HYPOTHETICAL 33.2 KD PROTEIN YCF80 32 2.8
sp|P26663|POLG_HCVBK Genome polyprotein [Contains: Core pro... 31 3.7
sp|P26662|POLG_HCVJA Genome polyprotein [Contains: Core pro... 30 8.3
>sp|O78449|YC80_GUITH HYPOTHETICAL 33.2 KD PROTEIN YCF80
Length = 282
Score = 31.6 bits (70), Expect = 2.8
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 314 DIFYKLNRLMPIRLLLCILKEIQRTKKIYH-GVHMASSKHPR 436
D FYKLNRL P RL ++ ++Q K I + + S HP+
Sbjct: 193 DTFYKLNRLSPPRLQFKLIADLQEIKNILNVNSNSRVSFHPK 234
>sp|P26663|POLG_HCVBK Genome polyprotein [Contains: Core protein p19 (Capsid protein C)
(p21); Envelope glycoprotein E1 (gp32) (gp35); Envelope
glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3
(p23); Serine protease/NTPase/helicase NS3 (Hepacivirin)
(NS3P) (p70); Nonstructural protein 4A (NS4A) (p8);
Nonstructural protein 4B (NS4B) (p27); Nonstructural
protein 5A (NS5A) (p56); RNA-directed RNA polymerase
(NS5B) (p68)]
Length = 3010
Score = 31.2 bits (69), Expect = 3.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 287 WYVVNYSPFDIFYKLNRLMPIRLLLCIL 370
W+V YS DI++ L+R P +LC+L
Sbjct: 2969 WFVAGYSGGDIYHSLSRARPRWFMLCLL 2996
>sp|P26662|POLG_HCVJA Genome polyprotein [Contains: Core protein p19 (Capsid protein C)
(p21); Envelope glycoprotein E1 (gp32) (gp35); Envelope
glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3
(p23); Serine protease/NTPase/helicase NS3 (Hepacivirin)
(NS3P) (p70); Nonstructural protein 4A (NS4A) (p8);
Nonstructural protein 4B (NS4B) (p27); Nonstructural
protein 5A (NS5A) (p56); RNA-directed RNA polymerase
(NS5B) (p68)]
Length = 3010
Score = 30.0 bits (66), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 287 WYVVNYSPFDIFYKLNRLMPIRLLLCIL 370
W+V Y+ DI++ L+R P +LC+L
Sbjct: 2969 WFVAGYNGGDIYHSLSRARPRWFMLCLL 2996
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,755,691
Number of Sequences: 369166
Number of extensions: 1841606
Number of successful extensions: 3721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3721
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)