Planaria EST Database


DrC_02799

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02799
         (838 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O78449|YC80_GUITH  HYPOTHETICAL 33.2 KD PROTEIN YCF80           32   2.8  
sp|P26663|POLG_HCVBK  Genome polyprotein [Contains: Core pro...    31   3.7  
sp|P26662|POLG_HCVJA  Genome polyprotein [Contains: Core pro...    30   8.3  
>sp|O78449|YC80_GUITH HYPOTHETICAL 33.2 KD PROTEIN YCF80
          Length = 282

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 314 DIFYKLNRLMPIRLLLCILKEIQRTKKIYH-GVHMASSKHPR 436
           D FYKLNRL P RL   ++ ++Q  K I +   +   S HP+
Sbjct: 193 DTFYKLNRLSPPRLQFKLIADLQEIKNILNVNSNSRVSFHPK 234
>sp|P26663|POLG_HCVBK Genome polyprotein [Contains: Core protein p19 (Capsid protein C)
            (p21); Envelope glycoprotein E1 (gp32) (gp35); Envelope
            glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3
            (p23); Serine protease/NTPase/helicase NS3 (Hepacivirin)
            (NS3P) (p70); Nonstructural protein 4A (NS4A) (p8);
            Nonstructural protein 4B (NS4B) (p27); Nonstructural
            protein 5A (NS5A) (p56); RNA-directed RNA polymerase
            (NS5B) (p68)]
          Length = 3010

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 287  WYVVNYSPFDIFYKLNRLMPIRLLLCIL 370
            W+V  YS  DI++ L+R  P   +LC+L
Sbjct: 2969 WFVAGYSGGDIYHSLSRARPRWFMLCLL 2996
>sp|P26662|POLG_HCVJA Genome polyprotein [Contains: Core protein p19 (Capsid protein C)
            (p21); Envelope glycoprotein E1 (gp32) (gp35); Envelope
            glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3
            (p23); Serine protease/NTPase/helicase NS3 (Hepacivirin)
            (NS3P) (p70); Nonstructural protein 4A (NS4A) (p8);
            Nonstructural protein 4B (NS4B) (p27); Nonstructural
            protein 5A (NS5A) (p56); RNA-directed RNA polymerase
            (NS5B) (p68)]
          Length = 3010

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 287  WYVVNYSPFDIFYKLNRLMPIRLLLCIL 370
            W+V  Y+  DI++ L+R  P   +LC+L
Sbjct: 2969 WFVAGYNGGDIYHSLSRARPRWFMLCLL 2996
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,755,691
Number of Sequences: 369166
Number of extensions: 1841606
Number of successful extensions: 3721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3721
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)