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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02793
         (167 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LX30|GCN2_ARATH  Probable serine/threonine-protein kina...    28   6.6  

>sp|Q9LX30|GCN2_ARATH Probable serine/threonine-protein kinase GCN2
          Length = 1241

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
 Frame = -3

Query: 129  RNFSFEFFCAKINSMET--------IQSKSFWLLDSRCDRSHKI 22
            RN  F+ F  K NS  T        +  +  WL+   CDR HK+
Sbjct: 1058 RNLFFQVFLTKENSSGTSNDGVLLAVGGRYDWLVQEVCDREHKM 1101

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.315    0.137    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,965,953
Number of Sequences: 369166
Number of extensions: 254023
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 68,354,980
effective HSP length: 28
effective length of database: 63,182,400
effective search space used: 1705924800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)