Planaria EST Database


DrC_02791

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02791
         (431 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P42694|HELZ_HUMAN  Probable helicase with zinc-finger domain    55   5e-08
sp|Q9BYK8|PR285_HUMAN  Peroxisomal proliferator-activated re...    44   1e-04
sp|Q8GYD9|SDE3_ARATH  Probable RNA helicase SDE3 (Silencing ...    43   3e-04
sp|Q9BXT6|M10L1_HUMAN  Putative helicase Mov10l1 (Moloney le...    36   0.030
sp|Q09820|RENT1_SCHPO  Regulator of nonsense transcripts 1 h...    35   0.068
sp|Q99MV5|M10L1_MOUSE  Putative helicase Mov10l1 (Moloney le...    35   0.068
sp|Q00540|NU2M_PHOVI  NADH-ubiquinone oxidoreductase chain 2...    34   0.12 
sp|Q7URR0|IF2_RHOBA  Translation initiation factor IF-2            33   0.20 
sp|P38599|NU2M_HALGR  NADH-ubiquinone oxidoreductase chain 2...    33   0.26 
sp|Q8LX31|NU2M_LEMCA  NADH-ubiquinone oxidoreductase chain 2...    33   0.26 
>sp|P42694|HELZ_HUMAN Probable helicase with zinc-finger domain
          Length = 1942

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
 Frame = +2

Query: 29   WIQNDD--ILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQGKEFGFVFLSPVLT--- 193
            W + DD  I V +P+  QV  IR  L+ K + ++NVE    +QGK+F  +FLS V T   
Sbjct: 942  WGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHT 1001

Query: 194  ------------QAVMNTYPILHQTFHDSKNLINVVISRAKHFVEVVGDFGSLLNCATWQ 337
                        Q + ++   L   F  +  L+N  I+RA+  V VVGD  +L +    +
Sbjct: 1002 CKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCR 1061

Query: 338  Q-WDTFVDMC 364
            + W+ F+ +C
Sbjct: 1062 KFWERFIALC 1071
>sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated receptor A interacting complex 285
            kDa protein (PPAR-alpha interacting complex protein 285)
          Length = 2649

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
 Frame = +2

Query: 2    ISNLLTNHDWIQNDDILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQGKEFGFVFLS 181
            I+  LT    ++  DI V +P+ +Q   I + L+ +GI  + V   +  QG E+ +V +S
Sbjct: 2503 ITKQLTLGRTVEPQDIAVLTPYNAQASEISKALRREGIAGVAVSSITKSQGSEWRYVLVS 2562

Query: 182  PVLT-------QAVMNTYPILHQTFHDSKNLINVVISRAKHFVEVVGDFGSLLNCATWQQ 340
             V T       Q    ++      F    N +NV ++RA+  + ++GD   L  C  W+ 
Sbjct: 2563 TVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGDHLLLRCCPLWR- 2621

Query: 341  WDTFVDMC 364
              + +D C
Sbjct: 2622 --SLLDFC 2627
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 (Silencing defective protein 3)
          Length = 1002

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
 Frame = +2

Query: 14   LTNHDWIQNDDILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQGKEFGFVFLSPVLT 193
            LT +D +Q +DI V +P+  QV  I+E L    + E+ V      QG+E   + +S V +
Sbjct: 698  LTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRS 757

Query: 194  QAVMNTYPILH-QTFHDSKNLINVVISRAKHFVEVVGDFGSLLNCATWQQ 340
                N +   +   F  +    NV I+RA   + ++G+   +     W +
Sbjct: 758  TIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNK 807
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 (Moloney leukemia virus 10-like protein 1)
            (MOV10-like 1)
          Length = 1211

 Score = 36.2 bits (82), Expect = 0.030
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
 Frame = +2

Query: 32   IQNDDILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQGKEFGFVFLSPVLTQAVMNT 211
            +   DI V +P+  QV  IR  L+N  + +I V      QG+E+  + +S V +      
Sbjct: 1058 VSASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFE 1117

Query: 212  YPILHQTFHDSKNLINVVISRAKHFVEVVGD---------FGSLL 319
                   F  +    NV I+R K  + V+G+         FG+LL
Sbjct: 1118 DDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALL 1162
>sp|Q09820|RENT1_SCHPO Regulator of nonsense transcripts 1 homolog
          Length = 925

 Score = 35.0 bits (79), Expect = 0.068
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
 Frame = +2

Query: 41   DDILVCSPFYSQVRLIREYLKNKG------IREINVELPSGIQGKEFGFVFLSPVLTQAV 202
            + I + +P+  Q   I +Y++N G       + + V      QG+E  F+ LS V +   
Sbjct: 716  EQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSE- 774

Query: 203  MNTYPILHQT--FHDSKNLINVVISRAKHFVEVVGDFGSLLNCATW 334
                   HQ   F +    +NV ++RAK+ V V+G+   L   A W
Sbjct: 775  -------HQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALW 813
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 (Moloney leukemia virus 10-like protein 1)
            (MOV10-like 1) (Cardiac helicase activated by MEF2
            protein) (Cardiac-specific RNA helicase)
          Length = 1187

 Score = 35.0 bits (79), Expect = 0.068
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
 Frame = +2

Query: 32   IQNDDILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQGKEFGFVFLSPVLTQAVMNT 211
            + + DI V +P+  QV  I+  L+N  + +I V      QG+E+  + +S V +      
Sbjct: 1060 VSSKDIGVITPYRKQVEKIKILLRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFE 1119

Query: 212  YPILHQTFHDSKNLINVVISRAKHFVEVVGD---------FGSLL 319
                   F  +    NV I+R K  + ++G+         FG+LL
Sbjct: 1120 DDRYFLGFLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALL 1164
>sp|Q00540|NU2M_PHOVI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 347

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = -2

Query: 133 FHVNFAYSFILEVFPY*SNLRIKWR--TNKNIIILNPIVI 20
           F++  +YS  L +FP  +N+++KW+  + K II+L P++I
Sbjct: 292 FYMRLSYSTALTMFPSVNNMKMKWQFESAKKIILLPPLII 331
>sp|Q7URR0|IF2_RHOBA Translation initiation factor IF-2
          Length = 1038

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 2   ISNLLTNHDWIQNDDILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQG 154
           ++ L+  +  ++  DILVC P + +VR +++ L  K I E     P  + G
Sbjct: 721 VAKLIVQNGTLRVGDILVCGPAHGRVRAMQDTLTGKPITEAGPSTPVSLMG 771
>sp|P38599|NU2M_HALGR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 347

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
 Frame = -2

Query: 133 FHVNFAYSFILEVFPY*SNLRIKWR--TNKNIIILNPIVI 20
           F++  +Y+  L +FP  +N+++KW+  + K II+L P++I
Sbjct: 292 FYMRLSYTTALTMFPSVNNMKMKWQFESAKKIILLPPLII 331
>sp|Q8LX31|NU2M_LEMCA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 347

 Score = 33.1 bits (74), Expect = 0.26
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = -2

Query: 133 FHVNFAYSFILEVFPY*SNLRIKW--RTNKNIIILNPIVI 20
           F++   YS  L +FP  +N+++KW  +  K I +L+P+VI
Sbjct: 292 FYMRLIYSTSLTMFPTLNNMKMKWQFQQTKQIFLLSPLVI 331
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,284,418
Number of Sequences: 369166
Number of extensions: 981902
Number of successful extensions: 2514
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2512
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)