Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02791
(431 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42694|HELZ_HUMAN Probable helicase with zinc-finger domain 55 5e-08
sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated re... 44 1e-04
sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 (Silencing ... 43 3e-04
sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 (Moloney le... 36 0.030
sp|Q09820|RENT1_SCHPO Regulator of nonsense transcripts 1 h... 35 0.068
sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 (Moloney le... 35 0.068
sp|Q00540|NU2M_PHOVI NADH-ubiquinone oxidoreductase chain 2... 34 0.12
sp|Q7URR0|IF2_RHOBA Translation initiation factor IF-2 33 0.20
sp|P38599|NU2M_HALGR NADH-ubiquinone oxidoreductase chain 2... 33 0.26
sp|Q8LX31|NU2M_LEMCA NADH-ubiquinone oxidoreductase chain 2... 33 0.26
>sp|P42694|HELZ_HUMAN Probable helicase with zinc-finger domain
Length = 1942
Score = 55.5 bits (132), Expect = 5e-08
Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Frame = +2
Query: 29 WIQNDD--ILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQGKEFGFVFLSPVLT--- 193
W + DD I V +P+ QV IR L+ K + ++NVE +QGK+F +FLS V T
Sbjct: 942 WGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHT 1001
Query: 194 ------------QAVMNTYPILHQTFHDSKNLINVVISRAKHFVEVVGDFGSLLNCATWQ 337
Q + ++ L F + L+N I+RA+ V VVGD +L + +
Sbjct: 1002 CKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCR 1061
Query: 338 Q-WDTFVDMC 364
+ W+ F+ +C
Sbjct: 1062 KFWERFIALC 1071
>sp|Q9BYK8|PR285_HUMAN Peroxisomal proliferator-activated receptor A interacting complex 285
kDa protein (PPAR-alpha interacting complex protein 285)
Length = 2649
Score = 43.9 bits (102), Expect = 1e-04
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Frame = +2
Query: 2 ISNLLTNHDWIQNDDILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQGKEFGFVFLS 181
I+ LT ++ DI V +P+ +Q I + L+ +GI + V + QG E+ +V +S
Sbjct: 2503 ITKQLTLGRTVEPQDIAVLTPYNAQASEISKALRREGIAGVAVSSITKSQGSEWRYVLVS 2562
Query: 182 PVLT-------QAVMNTYPILHQTFHDSKNLINVVISRAKHFVEVVGDFGSLLNCATWQQ 340
V T Q ++ F N +NV ++RA+ + ++GD L C W+
Sbjct: 2563 TVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGDHLLLRCCPLWR- 2621
Query: 341 WDTFVDMC 364
+ +D C
Sbjct: 2622 --SLLDFC 2627
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 (Silencing defective protein 3)
Length = 1002
Score = 42.7 bits (99), Expect = 3e-04
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Frame = +2
Query: 14 LTNHDWIQNDDILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQGKEFGFVFLSPVLT 193
LT +D +Q +DI V +P+ QV I+E L + E+ V QG+E + +S V +
Sbjct: 698 LTANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRS 757
Query: 194 QAVMNTYPILH-QTFHDSKNLINVVISRAKHFVEVVGDFGSLLNCATWQQ 340
N + + F + NV I+RA + ++G+ + W +
Sbjct: 758 TIKHNEFDRAYCLGFLSNPRRFNVAITRAISLLVIIGNPHIICKDMNWNK 807
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 (Moloney leukemia virus 10-like protein 1)
(MOV10-like 1)
Length = 1211
Score = 36.2 bits (82), Expect = 0.030
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Frame = +2
Query: 32 IQNDDILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQGKEFGFVFLSPVLTQAVMNT 211
+ DI V +P+ QV IR L+N + +I V QG+E+ + +S V +
Sbjct: 1058 VSASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFE 1117
Query: 212 YPILHQTFHDSKNLINVVISRAKHFVEVVGD---------FGSLL 319
F + NV I+R K + V+G+ FG+LL
Sbjct: 1118 DDRYFLGFLSNSKRFNVAITRPKALLIVLGNPHVLVRDPCFGALL 1162
>sp|Q09820|RENT1_SCHPO Regulator of nonsense transcripts 1 homolog
Length = 925
Score = 35.0 bits (79), Expect = 0.068
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Frame = +2
Query: 41 DDILVCSPFYSQVRLIREYLKNKG------IREINVELPSGIQGKEFGFVFLSPVLTQAV 202
+ I + +P+ Q I +Y++N G + + V QG+E F+ LS V +
Sbjct: 716 EQIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSE- 774
Query: 203 MNTYPILHQT--FHDSKNLINVVISRAKHFVEVVGDFGSLLNCATW 334
HQ F + +NV ++RAK+ V V+G+ L A W
Sbjct: 775 -------HQGIGFVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALW 813
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 (Moloney leukemia virus 10-like protein 1)
(MOV10-like 1) (Cardiac helicase activated by MEF2
protein) (Cardiac-specific RNA helicase)
Length = 1187
Score = 35.0 bits (79), Expect = 0.068
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Frame = +2
Query: 32 IQNDDILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQGKEFGFVFLSPVLTQAVMNT 211
+ + DI V +P+ QV I+ L+N + +I V QG+E+ + +S V +
Sbjct: 1060 VSSKDIGVITPYRKQVEKIKILLRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFE 1119
Query: 212 YPILHQTFHDSKNLINVVISRAKHFVEVVGD---------FGSLL 319
F + NV I+R K + ++G+ FG+LL
Sbjct: 1120 DDRYFLGFLSNSKRFNVAITRPKALLIILGNPHVLVRDPCFGALL 1164
>sp|Q00540|NU2M_PHOVI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 347
Score = 34.3 bits (77), Expect = 0.12
Identities = 15/40 (37%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = -2
Query: 133 FHVNFAYSFILEVFPY*SNLRIKWR--TNKNIIILNPIVI 20
F++ +YS L +FP +N+++KW+ + K II+L P++I
Sbjct: 292 FYMRLSYSTALTMFPSVNNMKMKWQFESAKKIILLPPLII 331
>sp|Q7URR0|IF2_RHOBA Translation initiation factor IF-2
Length = 1038
Score = 33.5 bits (75), Expect = 0.20
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 2 ISNLLTNHDWIQNDDILVCSPFYSQVRLIREYLKNKGIREINVELPSGIQG 154
++ L+ + ++ DILVC P + +VR +++ L K I E P + G
Sbjct: 721 VAKLIVQNGTLRVGDILVCGPAHGRVRAMQDTLTGKPITEAGPSTPVSLMG 771
>sp|P38599|NU2M_HALGR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 347
Score = 33.1 bits (74), Expect = 0.26
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Frame = -2
Query: 133 FHVNFAYSFILEVFPY*SNLRIKWR--TNKNIIILNPIVI 20
F++ +Y+ L +FP +N+++KW+ + K II+L P++I
Sbjct: 292 FYMRLSYTTALTMFPSVNNMKMKWQFESAKKIILLPPLII 331
>sp|Q8LX31|NU2M_LEMCA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 347
Score = 33.1 bits (74), Expect = 0.26
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -2
Query: 133 FHVNFAYSFILEVFPY*SNLRIKW--RTNKNIIILNPIVI 20
F++ YS L +FP +N+++KW + K I +L+P+VI
Sbjct: 292 FYMRLIYSTSLTMFPTLNNMKMKWQFQQTKQIFLLSPLVI 331
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,284,418
Number of Sequences: 369166
Number of extensions: 981902
Number of successful extensions: 2514
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2512
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)