Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02782
(710 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29693|EF1D_XENLA Elongation factor 1-delta (EF-1-delta)... 151 1e-36
sp|P29692|EF1D_HUMAN Elongation factor 1-delta (EF-1-delta)... 150 4e-36
sp|P57776|EF1D_MOUSE Elongation factor 1-delta (EF-1-delta) 150 4e-36
sp|P53787|EF1D_RABIT Elongation factor 1-delta (EF-1-delta) 149 9e-36
sp|P12262|EF1B_ARTSA Elongation factor 1-beta (EF-1-beta) 148 2e-35
sp|P24534|EF1B_HUMAN Elongation factor 1-beta (EF-1-beta) 144 2e-34
sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta (EF-1-beta) 144 2e-34
sp|O70251|EF1B_MOUSE Elongation factor 1-beta (EF-1-beta) 144 2e-34
sp|P30151|EF1B_XENLA Elongation factor 1-beta (EF-1-beta) (... 143 5e-34
sp|P34826|EF1B_RABIT Elongation factor 1-beta (EF-1-beta) 143 5e-34
>sp|P29693|EF1D_XENLA Elongation factor 1-delta (EF-1-delta) (P36)
Length = 265
Score = 151 bits (382), Expect = 1e-36
Identities = 94/226 (41%), Positives = 132/226 (58%), Gaps = 4/226 (1%)
Frame = +1
Query: 43 SSLYNKVGAQEVSVKEVPLVKETTKKCEVSKNPIVQEIEKAREQIKSTLSGCLAPSYDLS 222
S+L N E++ + L +E S + +V++++ A +++S LS
Sbjct: 47 SALSNSGDGSELAARVANLEQENQ-----SLHKVVKDLQSAISKLESRLS---------- 91
Query: 223 KFEELEKNQKNILSV--INEITARLSKIEIALKLQPSSIXXXXXXXXXXXXXXLFGSDXX 396
E+ K+QK + E+ AR+ K+++ + + LFGSD
Sbjct: 92 TLEKSSKSQKPAAASQPAIEVAARVQKVQVTPAAKEEN--GTGEDDDDDDDIDLFGSDNE 149
Query: 397 XXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAVRSIETDG 570
R+K Y EKK+ K VIAKS+I+LDVKPWDDET+MA+LE+ VR+++ DG
Sbjct: 150 EEDAEAARIREERLKQYAEKKSKKPGVIAKSSILLDVKPWDDETDMAKLEECVRTVQMDG 209
Query: 571 LLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
L+WGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEE+IT+FED VQ
Sbjct: 210 LVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDILEEEITKFEDYVQ 255
>sp|P29692|EF1D_HUMAN Elongation factor 1-delta (EF-1-delta) (Antigen NY-CO-4)
Length = 281
Score = 150 bits (378), Expect = 4e-36
Identities = 89/226 (39%), Positives = 123/226 (54%), Gaps = 37/226 (16%)
Frame = +1
Query: 142 IVQEIEKAREQIKSTLSGCLAPSYD----------LSKFEELEKNQKNILSVINEITARL 291
I+++I +ARE I+ +L+G P + + LE +++ V+ E+ +
Sbjct: 46 ILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAI 105
Query: 292 SKIEIALKL-------------------------QPSSIXXXXXXXXXXXXXXLFGSDXX 396
SK+E L + P+ LFGSD
Sbjct: 106 SKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNE 165
Query: 397 XXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAVRSIETDG 570
R++ Y EKKA K ++AKS+I+LDVKPWDDET+MA+LE VRSI+ DG
Sbjct: 166 EEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDG 225
Query: 571 LLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
L+WG+SKLVP+ YGI+KLQI CVVEDDKVGTD LEE+IT+FE+ VQ
Sbjct: 226 LVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQ 271
>sp|P57776|EF1D_MOUSE Elongation factor 1-delta (EF-1-delta)
Length = 281
Score = 150 bits (378), Expect = 4e-36
Identities = 89/226 (39%), Positives = 122/226 (53%), Gaps = 37/226 (16%)
Frame = +1
Query: 142 IVQEIEKAREQIKSTLSGCLAPSYD----------LSKFEELEKNQKNILSVINEITARL 291
I+++I +ARE I+ +L+G P + + LE +N+ V+ ++ +
Sbjct: 46 ILRDIARARENIQKSLAGSSGPGASSGPGGDHSELIVRITSLEVENQNLRGVVQDLQQAI 105
Query: 292 SKIEIALKL-------------------------QPSSIXXXXXXXXXXXXXXLFGSDXX 396
SK+E L P+ LFGSD
Sbjct: 106 SKLEARLSSLEKSSPTPRATAPQTQHVSPMRQVEPPTKKGATPAEDDEDKDIDLFGSDEE 165
Query: 397 XXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAVRSIETDG 570
R++ Y EKKA K ++AKS+I+LDVKPWDDET+MA+LE VRSI+ DG
Sbjct: 166 EEDKEAARLREERLRQYAEKKAKKPTLVAKSSILLDVKPWDDETDMAQLETCVRSIQLDG 225
Query: 571 LLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
L+WG+SKLVP+ YGI+KLQI CVVEDDKVGTD LEE+IT+FE+ VQ
Sbjct: 226 LVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQ 271
>sp|P53787|EF1D_RABIT Elongation factor 1-delta (EF-1-delta)
Length = 280
Score = 149 bits (375), Expect = 9e-36
Identities = 88/225 (39%), Positives = 120/225 (53%), Gaps = 36/225 (16%)
Frame = +1
Query: 142 IVQEIEKAREQIKSTLSGCLAPSYDLS----------KFEELEKNQKNILSVINEITARL 291
I+++I +ARE I+ +L+G P + LE +N+ V+ ++ +
Sbjct: 46 ILRDIARARENIQKSLAGSSGPGASSGPGGDHSELAVRIASLEVENQNLRGVVQDLQRAV 105
Query: 292 SKIEIALKL-------------------------QPSSIXXXXXXXXXXXXXXLFGSDXX 396
SK+E L P+ LFGSD
Sbjct: 106 SKLEARLSALEKSSPTHRASAPQTQHVSPMRQVEPPAKKAAAPAEDDEDDDIDLFGSDEE 165
Query: 397 XXXXXXXXXX-RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAVRSIETDGL 573
R++ Y EKKA K ++AKS+I+LDVKPWDDET+MA LE VRS++ DGL
Sbjct: 166 EDKEAARLREERLRQYAEKKARKPALVAKSSILLDVKPWDDETDMARLEACVRSVQLDGL 225
Query: 574 LWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
+WG+SKLVP+ YGI+KLQI CVVEDDKVGTD LEE+IT+FE+ VQ
Sbjct: 226 VWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQ 270
>sp|P12262|EF1B_ARTSA Elongation factor 1-beta (EF-1-beta)
Length = 207
Score = 148 bits (373), Expect = 2e-35
Identities = 84/190 (44%), Positives = 111/190 (58%), Gaps = 6/190 (3%)
Frame = +1
Query: 157 EKAREQI------KSTLSGCLAPSYDLSKFEELEKNQKNILSVINEITARLSKIEIALKL 318
EK +EQ+ KS L G D++ F +L K + + +S A K
Sbjct: 9 EKGQEQLNELLANKSYLQGYEPSQEDVAAFNQLNKAPSDKFPYLLRWYKHISSFSDAEKK 68
Query: 319 QPSSIXXXXXXXXXXXXXXLFGSDXXXXXXXXXXXXRVKMYNEKKAHKTVVIAKSNIILD 498
I LFGSD R+K Y++KK+ K ++AKS++ILD
Sbjct: 69 GFPGIPTSASKEEDDDVD-LFGSDEEDEEAEKIKAERMKAYSDKKSKKPAIVAKSSVILD 127
Query: 499 VKPWDDETNMAELEKAVRSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEE 678
+KPWDDET+MAE+EK VRS++ DGL+WG++KL+PLAYGIKKL I CVVEDDKV D L+E
Sbjct: 128 IKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSIDELQE 187
Query: 679 KITEFEDLVQ 708
KI+EFED VQ
Sbjct: 188 KISEFEDFVQ 197
>sp|P24534|EF1B_HUMAN Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 144 bits (364), Expect = 2e-34
Identities = 73/113 (64%), Positives = 85/113 (75%), Gaps = 2/113 (1%)
Frame = +1
Query: 376 LFGSDXXXXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAV 549
LFGSD R+ Y KKA K ++AKS+I+LDVKPWDDET+MA+LE+ V
Sbjct: 103 LFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECV 162
Query: 550 RSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
RSI+ DGL+WGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEE+IT FED VQ
Sbjct: 163 RSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ 215
>sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 144 bits (364), Expect = 2e-34
Identities = 73/113 (64%), Positives = 85/113 (75%), Gaps = 2/113 (1%)
Frame = +1
Query: 376 LFGSDXXXXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAV 549
LFGSD R+ Y KKA K ++AKS+I+LDVKPWDDET+MA+LE+ V
Sbjct: 103 LFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECV 162
Query: 550 RSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
RSI+ DGL+WGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEE+IT FED VQ
Sbjct: 163 RSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ 215
>sp|O70251|EF1B_MOUSE Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 144 bits (363), Expect = 2e-34
Identities = 73/113 (64%), Positives = 84/113 (74%), Gaps = 2/113 (1%)
Frame = +1
Query: 376 LFGSDXXXXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAV 549
LFGSD R+ Y KKA K V+AKS+I+LDVKPWDDET+M +LE+ V
Sbjct: 103 LFGSDDEEESEEAKKLREERLAQYESKKAKKPAVVAKSSILLDVKPWDDETDMTKLEECV 162
Query: 550 RSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
RSI+ DGL+WGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEE+IT FED VQ
Sbjct: 163 RSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ 215
>sp|P30151|EF1B_XENLA Elongation factor 1-beta (EF-1-beta) (p30)
Length = 227
Score = 143 bits (360), Expect = 5e-34
Identities = 73/113 (64%), Positives = 84/113 (74%), Gaps = 2/113 (1%)
Frame = +1
Query: 376 LFGSDXXXXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAV 549
LFGSD R+ Y KK+ K +IAKS+I+LDVKPWDDET+M +LE+ +
Sbjct: 105 LFGSDDEEESEDAKRVRDERLAQYEAKKSKKPTLIAKSSILLDVKPWDDETDMGKLEECL 164
Query: 550 RSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
RSI+ DGLLWGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEEKIT FED VQ
Sbjct: 165 RSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDVLEEKITAFEDFVQ 217
>sp|P34826|EF1B_RABIT Elongation factor 1-beta (EF-1-beta)
Length = 225
Score = 143 bits (360), Expect = 5e-34
Identities = 72/113 (63%), Positives = 84/113 (74%), Gaps = 2/113 (1%)
Frame = +1
Query: 376 LFGSDXXXXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAV 549
LFGSD R+ Y KKA K ++AKS+I+LDVKPWDDET+M +LE+ V
Sbjct: 103 LFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMVKLEECV 162
Query: 550 RSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
RSI+ DGL+WGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEE+IT FED VQ
Sbjct: 163 RSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ 215
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.312 0.130 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,088,311
Number of Sequences: 369166
Number of extensions: 802218
Number of successful extensions: 2269
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)