Planaria EST Database


DrC_02782

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02782
         (710 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29693|EF1D_XENLA  Elongation factor 1-delta (EF-1-delta)...   151   1e-36
sp|P29692|EF1D_HUMAN  Elongation factor 1-delta (EF-1-delta)...   150   4e-36
sp|P57776|EF1D_MOUSE  Elongation factor 1-delta (EF-1-delta)      150   4e-36
sp|P53787|EF1D_RABIT  Elongation factor 1-delta (EF-1-delta)      149   9e-36
sp|P12262|EF1B_ARTSA  Elongation factor 1-beta (EF-1-beta)        148   2e-35
sp|P24534|EF1B_HUMAN  Elongation factor 1-beta (EF-1-beta)        144   2e-34
sp|Q9YGQ1|EF1B_CHICK  Elongation factor 1-beta (EF-1-beta)        144   2e-34
sp|O70251|EF1B_MOUSE  Elongation factor 1-beta (EF-1-beta)        144   2e-34
sp|P30151|EF1B_XENLA  Elongation factor 1-beta (EF-1-beta) (...   143   5e-34
sp|P34826|EF1B_RABIT  Elongation factor 1-beta (EF-1-beta)        143   5e-34
>sp|P29693|EF1D_XENLA Elongation factor 1-delta (EF-1-delta) (P36)
          Length = 265

 Score =  151 bits (382), Expect = 1e-36
 Identities = 94/226 (41%), Positives = 132/226 (58%), Gaps = 4/226 (1%)
 Frame = +1

Query: 43  SSLYNKVGAQEVSVKEVPLVKETTKKCEVSKNPIVQEIEKAREQIKSTLSGCLAPSYDLS 222
           S+L N     E++ +   L +E       S + +V++++ A  +++S LS          
Sbjct: 47  SALSNSGDGSELAARVANLEQENQ-----SLHKVVKDLQSAISKLESRLS---------- 91

Query: 223 KFEELEKNQKNILSV--INEITARLSKIEIALKLQPSSIXXXXXXXXXXXXXXLFGSDXX 396
             E+  K+QK   +     E+ AR+ K+++    +  +               LFGSD  
Sbjct: 92  TLEKSSKSQKPAAASQPAIEVAARVQKVQVTPAAKEEN--GTGEDDDDDDDIDLFGSDNE 149

Query: 397 XXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAVRSIETDG 570
                       R+K Y EKK+ K  VIAKS+I+LDVKPWDDET+MA+LE+ VR+++ DG
Sbjct: 150 EEDAEAARIREERLKQYAEKKSKKPGVIAKSSILLDVKPWDDETDMAKLEECVRTVQMDG 209

Query: 571 LLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
           L+WGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEE+IT+FED VQ
Sbjct: 210 LVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDILEEEITKFEDYVQ 255
>sp|P29692|EF1D_HUMAN Elongation factor 1-delta (EF-1-delta) (Antigen NY-CO-4)
          Length = 281

 Score =  150 bits (378), Expect = 4e-36
 Identities = 89/226 (39%), Positives = 123/226 (54%), Gaps = 37/226 (16%)
 Frame = +1

Query: 142 IVQEIEKAREQIKSTLSGCLAPSYD----------LSKFEELEKNQKNILSVINEITARL 291
           I+++I +ARE I+ +L+G   P             + +   LE   +++  V+ E+   +
Sbjct: 46  ILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAI 105

Query: 292 SKIEIALKL-------------------------QPSSIXXXXXXXXXXXXXXLFGSDXX 396
           SK+E  L +                          P+                LFGSD  
Sbjct: 106 SKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNE 165

Query: 397 XXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAVRSIETDG 570
                       R++ Y EKKA K  ++AKS+I+LDVKPWDDET+MA+LE  VRSI+ DG
Sbjct: 166 EEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETDMAQLEACVRSIQLDG 225

Query: 571 LLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
           L+WG+SKLVP+ YGI+KLQI CVVEDDKVGTD LEE+IT+FE+ VQ
Sbjct: 226 LVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQ 271
>sp|P57776|EF1D_MOUSE Elongation factor 1-delta (EF-1-delta)
          Length = 281

 Score =  150 bits (378), Expect = 4e-36
 Identities = 89/226 (39%), Positives = 122/226 (53%), Gaps = 37/226 (16%)
 Frame = +1

Query: 142 IVQEIEKAREQIKSTLSGCLAPSYD----------LSKFEELEKNQKNILSVINEITARL 291
           I+++I +ARE I+ +L+G   P             + +   LE   +N+  V+ ++   +
Sbjct: 46  ILRDIARARENIQKSLAGSSGPGASSGPGGDHSELIVRITSLEVENQNLRGVVQDLQQAI 105

Query: 292 SKIEIALKL-------------------------QPSSIXXXXXXXXXXXXXXLFGSDXX 396
           SK+E  L                            P+                LFGSD  
Sbjct: 106 SKLEARLSSLEKSSPTPRATAPQTQHVSPMRQVEPPTKKGATPAEDDEDKDIDLFGSDEE 165

Query: 397 XXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAVRSIETDG 570
                       R++ Y EKKA K  ++AKS+I+LDVKPWDDET+MA+LE  VRSI+ DG
Sbjct: 166 EEDKEAARLREERLRQYAEKKAKKPTLVAKSSILLDVKPWDDETDMAQLETCVRSIQLDG 225

Query: 571 LLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
           L+WG+SKLVP+ YGI+KLQI CVVEDDKVGTD LEE+IT+FE+ VQ
Sbjct: 226 LVWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQ 271
>sp|P53787|EF1D_RABIT Elongation factor 1-delta (EF-1-delta)
          Length = 280

 Score =  149 bits (375), Expect = 9e-36
 Identities = 88/225 (39%), Positives = 120/225 (53%), Gaps = 36/225 (16%)
 Frame = +1

Query: 142 IVQEIEKAREQIKSTLSGCLAPSYDLS----------KFEELEKNQKNILSVINEITARL 291
           I+++I +ARE I+ +L+G   P               +   LE   +N+  V+ ++   +
Sbjct: 46  ILRDIARARENIQKSLAGSSGPGASSGPGGDHSELAVRIASLEVENQNLRGVVQDLQRAV 105

Query: 292 SKIEIALKL-------------------------QPSSIXXXXXXXXXXXXXXLFGSDXX 396
           SK+E  L                            P+                LFGSD  
Sbjct: 106 SKLEARLSALEKSSPTHRASAPQTQHVSPMRQVEPPAKKAAAPAEDDEDDDIDLFGSDEE 165

Query: 397 XXXXXXXXXX-RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAVRSIETDGL 573
                      R++ Y EKKA K  ++AKS+I+LDVKPWDDET+MA LE  VRS++ DGL
Sbjct: 166 EDKEAARLREERLRQYAEKKARKPALVAKSSILLDVKPWDDETDMARLEACVRSVQLDGL 225

Query: 574 LWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
           +WG+SKLVP+ YGI+KLQI CVVEDDKVGTD LEE+IT+FE+ VQ
Sbjct: 226 VWGASKLVPVGYGIRKLQIQCVVEDDKVGTDLLEEEITKFEEHVQ 270
>sp|P12262|EF1B_ARTSA Elongation factor 1-beta (EF-1-beta)
          Length = 207

 Score =  148 bits (373), Expect = 2e-35
 Identities = 84/190 (44%), Positives = 111/190 (58%), Gaps = 6/190 (3%)
 Frame = +1

Query: 157 EKAREQI------KSTLSGCLAPSYDLSKFEELEKNQKNILSVINEITARLSKIEIALKL 318
           EK +EQ+      KS L G      D++ F +L K   +    +      +S    A K 
Sbjct: 9   EKGQEQLNELLANKSYLQGYEPSQEDVAAFNQLNKAPSDKFPYLLRWYKHISSFSDAEKK 68

Query: 319 QPSSIXXXXXXXXXXXXXXLFGSDXXXXXXXXXXXXRVKMYNEKKAHKTVVIAKSNIILD 498
               I              LFGSD            R+K Y++KK+ K  ++AKS++ILD
Sbjct: 69  GFPGIPTSASKEEDDDVD-LFGSDEEDEEAEKIKAERMKAYSDKKSKKPAIVAKSSVILD 127

Query: 499 VKPWDDETNMAELEKAVRSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEE 678
           +KPWDDET+MAE+EK VRS++ DGL+WG++KL+PLAYGIKKL I CVVEDDKV  D L+E
Sbjct: 128 IKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVEDDKVSIDELQE 187

Query: 679 KITEFEDLVQ 708
           KI+EFED VQ
Sbjct: 188 KISEFEDFVQ 197
>sp|P24534|EF1B_HUMAN Elongation factor 1-beta (EF-1-beta)
          Length = 225

 Score =  144 bits (364), Expect = 2e-34
 Identities = 73/113 (64%), Positives = 85/113 (75%), Gaps = 2/113 (1%)
 Frame = +1

Query: 376 LFGSDXXXXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAV 549
           LFGSD              R+  Y  KKA K  ++AKS+I+LDVKPWDDET+MA+LE+ V
Sbjct: 103 LFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECV 162

Query: 550 RSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
           RSI+ DGL+WGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEE+IT FED VQ
Sbjct: 163 RSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ 215
>sp|Q9YGQ1|EF1B_CHICK Elongation factor 1-beta (EF-1-beta)
          Length = 225

 Score =  144 bits (364), Expect = 2e-34
 Identities = 73/113 (64%), Positives = 85/113 (75%), Gaps = 2/113 (1%)
 Frame = +1

Query: 376 LFGSDXXXXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAV 549
           LFGSD              R+  Y  KKA K  ++AKS+I+LDVKPWDDET+MA+LE+ V
Sbjct: 103 LFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMAKLEECV 162

Query: 550 RSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
           RSI+ DGL+WGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEE+IT FED VQ
Sbjct: 163 RSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ 215
>sp|O70251|EF1B_MOUSE Elongation factor 1-beta (EF-1-beta)
          Length = 225

 Score =  144 bits (363), Expect = 2e-34
 Identities = 73/113 (64%), Positives = 84/113 (74%), Gaps = 2/113 (1%)
 Frame = +1

Query: 376 LFGSDXXXXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAV 549
           LFGSD              R+  Y  KKA K  V+AKS+I+LDVKPWDDET+M +LE+ V
Sbjct: 103 LFGSDDEEESEEAKKLREERLAQYESKKAKKPAVVAKSSILLDVKPWDDETDMTKLEECV 162

Query: 550 RSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
           RSI+ DGL+WGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEE+IT FED VQ
Sbjct: 163 RSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ 215
>sp|P30151|EF1B_XENLA Elongation factor 1-beta (EF-1-beta) (p30)
          Length = 227

 Score =  143 bits (360), Expect = 5e-34
 Identities = 73/113 (64%), Positives = 84/113 (74%), Gaps = 2/113 (1%)
 Frame = +1

Query: 376 LFGSDXXXXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAV 549
           LFGSD              R+  Y  KK+ K  +IAKS+I+LDVKPWDDET+M +LE+ +
Sbjct: 105 LFGSDDEEESEDAKRVRDERLAQYEAKKSKKPTLIAKSSILLDVKPWDDETDMGKLEECL 164

Query: 550 RSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
           RSI+ DGLLWGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEEKIT FED VQ
Sbjct: 165 RSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDVLEEKITAFEDFVQ 217
>sp|P34826|EF1B_RABIT Elongation factor 1-beta (EF-1-beta)
          Length = 225

 Score =  143 bits (360), Expect = 5e-34
 Identities = 72/113 (63%), Positives = 84/113 (74%), Gaps = 2/113 (1%)
 Frame = +1

Query: 376 LFGSDXXXXXXXXXXXX--RVKMYNEKKAHKTVVIAKSNIILDVKPWDDETNMAELEKAV 549
           LFGSD              R+  Y  KKA K  ++AKS+I+LDVKPWDDET+M +LE+ V
Sbjct: 103 LFGSDDEEESEEAKRLREERLAQYESKKAKKPALVAKSSILLDVKPWDDETDMVKLEECV 162

Query: 550 RSIETDGLLWGSSKLVPLAYGIKKLQISCVVEDDKVGTDFLEEKITEFEDLVQ 708
           RSI+ DGL+WGSSKLVP+ YGIKKLQI CVVEDDKVGTD LEE+IT FED VQ
Sbjct: 163 RSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQITAFEDYVQ 215
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.312    0.130    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,088,311
Number of Sequences: 369166
Number of extensions: 802218
Number of successful extensions: 2269
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2262
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6267895215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)