Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02775
(730 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P91621|SIF1_DROME Still life protein type 1 (SIF type 1) 33 0.78
sp|P91620|SIF2_DROME Still life protein type 2 (SIF type 2) 33 0.78
sp|Q61115|PTC1_MOUSE Patched protein homolog 1 (PTC1) (PTC) 32 1.7
sp|Q90693|PTC1_CHICK Patched protein homolog 1 (PTC1) (PTC) 32 1.7
sp|Q13635|PTC1_HUMAN Patched protein homolog 1 (PTC1) (PTC) 32 2.3
sp|Q98864|PTC1_BRARE Patched protein homolog 1 (Patched 1) ... 30 6.6
>sp|P91621|SIF1_DROME Still life protein type 1 (SIF type 1)
Length = 2064
Score = 33.1 bits (74), Expect = 0.78
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -2
Query: 363 WYSNNQTKYDSF--NRCRIQTLLHMHPMEISIKRYIWLRSTHHNMEA**LSYVIHPLNPV 190
+Y N+ Y SF + + Q +LH + +++ ++ R+ + SY+I P+ +
Sbjct: 1522 YYVNHFKLYSSFCASHSKAQKVLHPNEGNHALQEFLAARNPKQQHSSTLESYLIKPIQRI 1581
Query: 189 IKYPFLFSKTR 157
+KYP L + R
Sbjct: 1582 LKYPLLLQQMR 1592
>sp|P91620|SIF2_DROME Still life protein type 2 (SIF type 2)
Length = 2044
Score = 33.1 bits (74), Expect = 0.78
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = -2
Query: 363 WYSNNQTKYDSF--NRCRIQTLLHMHPMEISIKRYIWLRSTHHNMEA**LSYVIHPLNPV 190
+Y N+ Y SF + + Q +LH + +++ ++ R+ + SY+I P+ +
Sbjct: 1502 YYVNHFKLYSSFCASHSKAQKVLHPNEGNHALQEFLAARNPKQQHSSTLESYLIKPIQRI 1561
Query: 189 IKYPFLFSKTR 157
+KYP L + R
Sbjct: 1562 LKYPLLLQQMR 1572
>sp|Q61115|PTC1_MOUSE Patched protein homolog 1 (PTC1) (PTC)
Length = 1434
Score = 32.0 bits (71), Expect = 1.7
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 472 LGLIESVIVSIVVGLTIDYPVHIGLAYNNSDLPTKEARTQQMLKEMGVSILSGMITTL 645
L + VI+ VG+ +++ VH+ LA+ + + K R L+ M +L G ++TL
Sbjct: 1064 LSAVPVVILIASVGIGVEFTVHVALAFLTA-IGDKNHRAMLALEHMFAPVLDGAVSTL 1120
>sp|Q90693|PTC1_CHICK Patched protein homolog 1 (PTC1) (PTC)
Length = 1442
Score = 32.0 bits (71), Expect = 1.7
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = +1
Query: 472 LGLIESVIVSIVVGLTIDYPVHIGLAYNNSDLPTKEARTQQMLKEMGVSILSGMITTL 645
L + VI+ VG+ +++ VHI LA+ + + K R L+ M +L G ++TL
Sbjct: 1077 LSAVPVVILIASVGIGVEFTVHIALAFLTA-IGDKNRRAVLALEHMFAPVLDGAVSTL 1133
>sp|Q13635|PTC1_HUMAN Patched protein homolog 1 (PTC1) (PTC)
Length = 1447
Score = 31.6 bits (70), Expect = 2.3
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 472 LGLIESVIVSIVVGLTIDYPVHIGLAYNNSDLPTKEARTQQMLKEMGVSILSGMITTL 645
L + VI+ VG+ +++ VH+ LA+ + + K R L+ M +L G ++TL
Sbjct: 1078 LSAVPVVILIASVGIGVEFTVHVALAFLTA-IGDKNRRAVLALEHMFAPVLDGAVSTL 1134
>sp|Q98864|PTC1_BRARE Patched protein homolog 1 (Patched 1) (PTC1)
Length = 1220
Score = 30.0 bits (66), Expect = 6.6
Identities = 29/123 (23%), Positives = 52/123 (42%)
Frame = +1
Query: 277 GYFHWVHVQQSLNSAAIKGVVLGLVVAIPILIFATRNIFVFLIILLXXXXXXXXXXXXXX 456
G HW L S ++ LV AI +L T + VF++ ++
Sbjct: 1012 GLRHWF-----LLSISVVLACTFLVCAILLLNPWTAGVIVFILPMMTVELFGIMGLIGIK 1066
Query: 457 XFKWDLGLIESVIVSIVVGLTIDYPVHIGLAYNNSDLPTKEARTQQMLKEMGVSILSGMI 636
L I VI+ VG+ +++ VHI L + + + + R+ ++ M ++ G I
Sbjct: 1067 -----LSAIPVVILIASVGIGVEFTVHIALGFLTA-IGDRNTRSAVAMEHMFAPVIDGAI 1120
Query: 637 TTL 645
+TL
Sbjct: 1121 STL 1123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,789,313
Number of Sequences: 369166
Number of extensions: 1526310
Number of successful extensions: 3355
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3355
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6486082400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)