Planaria EST Database


DrC_02772

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02772
         (596 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P37202|DIS3_SCHPO  Mitotic control protein dis3                 61   2e-09
sp|Q9Y2L1|RRP44_HUMAN  Exosome complex exonuclease RRP44 (Ri...    60   3e-09
sp|Q17632|RRP44_CAEEL  Probable exosome complex exonuclease ...    57   3e-08
sp|Q08162|RRP44_YEAST  Exosome complex exonuclease RRP44 (Ri...    48   2e-05
sp|P01125|REL_MELGA  C-Rel proto-oncogene protein (C-Rel pro...    34   0.32 
sp|O67543|HIS1_AQUAE  ATP phosphoribosyltransferase (ATP-PRT...    32   0.93 
sp|P59143|RR4_HYPDI  Chloroplast 30S ribosomal protein S4          32   1.2  
sp|P59147|RR4_LOPCO  Chloroplast 30S ribosomal protein S4          32   1.6  
sp|O08601|MTP_MOUSE  Microsomal triglyceride transfer protei...    31   2.1  
sp|P59137|RR4_CATCI  Chloroplast 30S ribosomal protein S4          31   2.7  
>sp|P37202|DIS3_SCHPO Mitotic control protein dis3
          Length = 970

 Score = 61.2 bits (147), Expect = 2e-09
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 1/140 (0%)
 Frame = +3

Query: 24   SLLTNSSLAEQCNIMNHQHRQAQLVQRASIELFQAMFFKNKIESDPARYTEGVVVKLRSN 203
            SL   S L E CN +N++HR AQ+  RASIE +     K  +  + A      V+K+  N
Sbjct: 835  SLSDKSRLIEICNGINYRHRMAQMAGRASIEYYVGQALKGGVAEEDA-----YVIKVFKN 889

Query: 204  GFVVHIPRYGIKGSVFLKKQDNSIAWLKKKAESFQKLGKVN-RVEWLTDEAVIENESFQQ 380
            GFVV I R+G++G V+ K   +    L+   E  +   K+N  +        ++ + FQQ
Sbjct: 890  GFVVFIARFGLEGIVYTKSLSSV---LEPNVEYVEDEYKLNIEIRDQPKPQTVQIQMFQQ 946

Query: 381  SINKVTVIRGTNQISQTYKL 440
               +VT +R  +   Q  ++
Sbjct: 947  VRVRVTTVRDEHSGKQKVQI 966
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 (Ribosomal RNA processing protein
            44) (DIS3 protein homolog)
          Length = 958

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
 Frame = +3

Query: 27   LLTNSSLAEQCNIMNHQHRQAQLVQRASIELFQAMFFKNK-IESDPARYTEGVVVKLRSN 203
            L     LA+ C  +N +H+ AQ  QRAS+     +FFK+K I S+     E  ++ +R N
Sbjct: 804  LTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSE-----EAYILFVRKN 858

Query: 204  GFVVHIPRYGIKGSVFLKKQ---------DNSIAWLKKKAESFQKLGKVNRVEWLTDEAV 356
              VV IP+YG++G+VF +++         D+ I  LK +   F    KV +V+ + D + 
Sbjct: 859  AIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFDKV-KVKIMLDSSN 917

Query: 357  IENESFQQSI 386
            ++++  + S+
Sbjct: 918  LQHQKIRMSL 927
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 (Ribosomal RNA processing
            protein 44) (DIS3 protein homolog)
          Length = 1029

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 27/80 (33%), Positives = 48/80 (60%)
 Frame = +3

Query: 18   EDSLLTNSSLAEQCNIMNHQHRQAQLVQRASIELFQAMFFKNKIESDPARYTEGVVVKLR 197
            +  LL  +   + C  +N++H+QAQ   RAS++L    +FK K+E+      EG V+ +R
Sbjct: 883  QSGLLNQARCTKICTNINYRHKQAQYAGRASVQLNVVRYFKGKVET-----CEGFVMGVR 937

Query: 198  SNGFVVHIPRYGIKGSVFLK 257
            +NG  V +P+YG++  + L+
Sbjct: 938  NNGIQVFVPKYGLESIIVLQ 957
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease RRP44 (Ribosomal RNA processing protein
            44) (Protein DIS3)
          Length = 1001

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 23/66 (34%), Positives = 38/66 (57%)
 Frame = +3

Query: 57   CNIMNHQHRQAQLVQRASIELFQAMFFKNKIESDPARYTEGVVVKLRSNGFVVHIPRYGI 236
            C  +N +HR AQ   RASIE +     +N   ++      G V+K+ +NG VV +P++G+
Sbjct: 881  CRNINRKHRNAQFAGRASIEYYVGQVMRNNESTET-----GYVIKVFNNGIVVLVPKFGV 935

Query: 237  KGSVFL 254
            +G + L
Sbjct: 936  EGLIRL 941
>sp|P01125|REL_MELGA C-Rel proto-oncogene protein (C-Rel protein) (p68)
          Length = 538

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = +3

Query: 201 NGFVVHIPRYGIKGSVFLKK-QDNSIAWLKKKAESFQK-LGKVNRVEWLTDEAVIENESF 374
           N F   +P+ G +GS  L    DN + W  +K  SF +  G  + +      A + + + 
Sbjct: 398 NSFTAEVPQPGAQGSSSLPAYHDNPLNWPDEKDSSFYRNFGNTHGMG-----AALVSAAD 452

Query: 375 QQSINKVTVIRGTNQISQT 431
            QS++  ++++GT+Q S T
Sbjct: 453 MQSVSSSSIVQGTHQASAT 471
>sp|O67543|HIS1_AQUAE ATP phosphoribosyltransferase (ATP-PRTase) (ATP-PRT)
          Length = 214

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
 Frame = +3

Query: 153 SDPARYTEGVVVKLRSNGFVVHIPRYGIKGSVFLKKQDNSIAWLK----KKAESFQKLGK 320
           SD   Y E  V  L   G+ V++ +   K SV+ +  D  I + +     K ES +K   
Sbjct: 50  SDVPVYVESGVSDLGVCGYDVYLEK---KPSVY-RLMDLGIGFCRIAVAGKPESEEKYFS 105

Query: 321 VNRVEWLTDEAVIENESFQQSINKVTV--IRGTNQISQTYKLFDHVLLRIDASETHAHGL 494
              +   T    I  E F++   K  +  + G+ +++    L D +L  +    T     
Sbjct: 106 STHISVATKYPNIAYEFFKKKGVKADIYYLNGSVELAPLVGLSDFILDLVQTGRTLKENG 165

Query: 495 SLQLEYVGK----ILSTKENSLVPSGDVMETLSR 584
            + +E VGK    +++ K++  + +G +ME LSR
Sbjct: 166 LIVIEEVGKSTAWLIANKDSFRIKNGQIMEFLSR 199
>sp|P59143|RR4_HYPDI Chloroplast 30S ribosomal protein S4
          Length = 202

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = +3

Query: 201 NGFVVHIPRYGIKGSVF--LKKQDNSIAWLKKKAESFQKLGKVNRVEWLTDE------AV 356
           NG++V IP Y  K   F  +K Q  S A + K  E +QK    N + + + E       +
Sbjct: 120 NGYIVDIPSYRCKPQDFINIKNQRKSEAIISKNIEFYQKYKIPNHLTYNSLEKKGLVNQI 179

Query: 357 IENESFQQSINKVTVI 404
           +  ES    IN++ V+
Sbjct: 180 LNRESIGLKINELLVV 195
>sp|P59147|RR4_LOPCO Chloroplast 30S ribosomal protein S4
          Length = 203

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = +3

Query: 201 NGFVVHIPRYGIKGSVF--LKKQDNSIAWLKKKAESFQKLGKVNRVEWLTDE------AV 356
           NG++V IP Y  K   F  +K +  S + + K  E +QK    N + + + E       +
Sbjct: 121 NGYIVDIPSYRCKPQDFITIKNKQKSESIISKNIEFYQKSKIANHLTYSSLEKKGLVNQI 180

Query: 357 IENESFQQSINKVTVI 404
           ++ ES    IN++ V+
Sbjct: 181 LDRESIGLKINELLVV 196
>sp|O08601|MTP_MOUSE Microsomal triglyceride transfer protein large subunit precursor
          Length = 894

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = +3

Query: 318 KVNRVEWLTDEAVIENESFQQSINKVTVIRGTNQISQTYKLFDHVLLRIDASETHAHGLS 497
           KV +++ L D   IE   F  + N+V  +        TYK+ D  +  + A ET A  L+
Sbjct: 184 KVVKIKAL-DTCKIERSGFTTA-NQVLGVSSKATSVTTYKIEDSFVTAVLAEETRAFALN 241

Query: 498 LQLEYVGKILSTKENSL 548
            Q    GKI+S ++  L
Sbjct: 242 FQQTIAGKIVSKQKLEL 258
>sp|P59137|RR4_CATCI Chloroplast 30S ribosomal protein S4
          Length = 202

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = +3

Query: 201 NGFVVHIPRYGIKGSVF--LKKQDNSIAWLKKKAESFQKLGKVNRVEWLTDE------AV 356
           NG++V IP Y  K   F  +K Q  S   + K  E +QK    N + + + E       +
Sbjct: 120 NGYIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLIYNSLEKKGLVNQI 179

Query: 357 IENESFQQSINKVTVI 404
           +++ES    IN++ V+
Sbjct: 180 LDHESIGLKINELLVV 195
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,090,087
Number of Sequences: 369166
Number of extensions: 1492903
Number of successful extensions: 4395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4391
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)