Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02772
(596 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37202|DIS3_SCHPO Mitotic control protein dis3 61 2e-09
sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 (Ri... 60 3e-09
sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease ... 57 3e-08
sp|Q08162|RRP44_YEAST Exosome complex exonuclease RRP44 (Ri... 48 2e-05
sp|P01125|REL_MELGA C-Rel proto-oncogene protein (C-Rel pro... 34 0.32
sp|O67543|HIS1_AQUAE ATP phosphoribosyltransferase (ATP-PRT... 32 0.93
sp|P59143|RR4_HYPDI Chloroplast 30S ribosomal protein S4 32 1.2
sp|P59147|RR4_LOPCO Chloroplast 30S ribosomal protein S4 32 1.6
sp|O08601|MTP_MOUSE Microsomal triglyceride transfer protei... 31 2.1
sp|P59137|RR4_CATCI Chloroplast 30S ribosomal protein S4 31 2.7
>sp|P37202|DIS3_SCHPO Mitotic control protein dis3
Length = 970
Score = 61.2 bits (147), Expect = 2e-09
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 1/140 (0%)
Frame = +3
Query: 24 SLLTNSSLAEQCNIMNHQHRQAQLVQRASIELFQAMFFKNKIESDPARYTEGVVVKLRSN 203
SL S L E CN +N++HR AQ+ RASIE + K + + A V+K+ N
Sbjct: 835 SLSDKSRLIEICNGINYRHRMAQMAGRASIEYYVGQALKGGVAEEDA-----YVIKVFKN 889
Query: 204 GFVVHIPRYGIKGSVFLKKQDNSIAWLKKKAESFQKLGKVN-RVEWLTDEAVIENESFQQ 380
GFVV I R+G++G V+ K + L+ E + K+N + ++ + FQQ
Sbjct: 890 GFVVFIARFGLEGIVYTKSLSSV---LEPNVEYVEDEYKLNIEIRDQPKPQTVQIQMFQQ 946
Query: 381 SINKVTVIRGTNQISQTYKL 440
+VT +R + Q ++
Sbjct: 947 VRVRVTTVRDEHSGKQKVQI 966
>sp|Q9Y2L1|RRP44_HUMAN Exosome complex exonuclease RRP44 (Ribosomal RNA processing protein
44) (DIS3 protein homolog)
Length = 958
Score = 60.5 bits (145), Expect = 3e-09
Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 10/130 (7%)
Frame = +3
Query: 27 LLTNSSLAEQCNIMNHQHRQAQLVQRASIELFQAMFFKNK-IESDPARYTEGVVVKLRSN 203
L LA+ C +N +H+ AQ QRAS+ +FFK+K I S+ E ++ +R N
Sbjct: 804 LTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFFKSKGIVSE-----EAYILFVRKN 858
Query: 204 GFVVHIPRYGIKGSVFLKKQ---------DNSIAWLKKKAESFQKLGKVNRVEWLTDEAV 356
VV IP+YG++G+VF +++ D+ I LK + F KV +V+ + D +
Sbjct: 859 AIVVLIPKYGLEGTVFFEEKDKPNPQLIYDDEIPSLKIEDTVFHVFDKV-KVKIMLDSSN 917
Query: 357 IENESFQQSI 386
++++ + S+
Sbjct: 918 LQHQKIRMSL 927
>sp|Q17632|RRP44_CAEEL Probable exosome complex exonuclease RRP44 (Ribosomal RNA processing
protein 44) (DIS3 protein homolog)
Length = 1029
Score = 57.4 bits (137), Expect = 3e-08
Identities = 27/80 (33%), Positives = 48/80 (60%)
Frame = +3
Query: 18 EDSLLTNSSLAEQCNIMNHQHRQAQLVQRASIELFQAMFFKNKIESDPARYTEGVVVKLR 197
+ LL + + C +N++H+QAQ RAS++L +FK K+E+ EG V+ +R
Sbjct: 883 QSGLLNQARCTKICTNINYRHKQAQYAGRASVQLNVVRYFKGKVET-----CEGFVMGVR 937
Query: 198 SNGFVVHIPRYGIKGSVFLK 257
+NG V +P+YG++ + L+
Sbjct: 938 NNGIQVFVPKYGLESIIVLQ 957
>sp|Q08162|RRP44_YEAST Exosome complex exonuclease RRP44 (Ribosomal RNA processing protein
44) (Protein DIS3)
Length = 1001
Score = 47.8 bits (112), Expect = 2e-05
Identities = 23/66 (34%), Positives = 38/66 (57%)
Frame = +3
Query: 57 CNIMNHQHRQAQLVQRASIELFQAMFFKNKIESDPARYTEGVVVKLRSNGFVVHIPRYGI 236
C +N +HR AQ RASIE + +N ++ G V+K+ +NG VV +P++G+
Sbjct: 881 CRNINRKHRNAQFAGRASIEYYVGQVMRNNESTET-----GYVIKVFNNGIVVLVPKFGV 935
Query: 237 KGSVFL 254
+G + L
Sbjct: 936 EGLIRL 941
>sp|P01125|REL_MELGA C-Rel proto-oncogene protein (C-Rel protein) (p68)
Length = 538
Score = 33.9 bits (76), Expect = 0.32
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 201 NGFVVHIPRYGIKGSVFLKK-QDNSIAWLKKKAESFQK-LGKVNRVEWLTDEAVIENESF 374
N F +P+ G +GS L DN + W +K SF + G + + A + + +
Sbjct: 398 NSFTAEVPQPGAQGSSSLPAYHDNPLNWPDEKDSSFYRNFGNTHGMG-----AALVSAAD 452
Query: 375 QQSINKVTVIRGTNQISQT 431
QS++ ++++GT+Q S T
Sbjct: 453 MQSVSSSSIVQGTHQASAT 471
>sp|O67543|HIS1_AQUAE ATP phosphoribosyltransferase (ATP-PRTase) (ATP-PRT)
Length = 214
Score = 32.3 bits (72), Expect = 0.93
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Frame = +3
Query: 153 SDPARYTEGVVVKLRSNGFVVHIPRYGIKGSVFLKKQDNSIAWLK----KKAESFQKLGK 320
SD Y E V L G+ V++ + K SV+ + D I + + K ES +K
Sbjct: 50 SDVPVYVESGVSDLGVCGYDVYLEK---KPSVY-RLMDLGIGFCRIAVAGKPESEEKYFS 105
Query: 321 VNRVEWLTDEAVIENESFQQSINKVTV--IRGTNQISQTYKLFDHVLLRIDASETHAHGL 494
+ T I E F++ K + + G+ +++ L D +L + T
Sbjct: 106 STHISVATKYPNIAYEFFKKKGVKADIYYLNGSVELAPLVGLSDFILDLVQTGRTLKENG 165
Query: 495 SLQLEYVGK----ILSTKENSLVPSGDVMETLSR 584
+ +E VGK +++ K++ + +G +ME LSR
Sbjct: 166 LIVIEEVGKSTAWLIANKDSFRIKNGQIMEFLSR 199
>sp|P59143|RR4_HYPDI Chloroplast 30S ribosomal protein S4
Length = 202
Score = 32.0 bits (71), Expect = 1.2
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +3
Query: 201 NGFVVHIPRYGIKGSVF--LKKQDNSIAWLKKKAESFQKLGKVNRVEWLTDE------AV 356
NG++V IP Y K F +K Q S A + K E +QK N + + + E +
Sbjct: 120 NGYIVDIPSYRCKPQDFINIKNQRKSEAIISKNIEFYQKYKIPNHLTYNSLEKKGLVNQI 179
Query: 357 IENESFQQSINKVTVI 404
+ ES IN++ V+
Sbjct: 180 LNRESIGLKINELLVV 195
>sp|P59147|RR4_LOPCO Chloroplast 30S ribosomal protein S4
Length = 203
Score = 31.6 bits (70), Expect = 1.6
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +3
Query: 201 NGFVVHIPRYGIKGSVF--LKKQDNSIAWLKKKAESFQKLGKVNRVEWLTDE------AV 356
NG++V IP Y K F +K + S + + K E +QK N + + + E +
Sbjct: 121 NGYIVDIPSYRCKPQDFITIKNKQKSESIISKNIEFYQKSKIANHLTYSSLEKKGLVNQI 180
Query: 357 IENESFQQSINKVTVI 404
++ ES IN++ V+
Sbjct: 181 LDRESIGLKINELLVV 196
>sp|O08601|MTP_MOUSE Microsomal triglyceride transfer protein large subunit precursor
Length = 894
Score = 31.2 bits (69), Expect = 2.1
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +3
Query: 318 KVNRVEWLTDEAVIENESFQQSINKVTVIRGTNQISQTYKLFDHVLLRIDASETHAHGLS 497
KV +++ L D IE F + N+V + TYK+ D + + A ET A L+
Sbjct: 184 KVVKIKAL-DTCKIERSGFTTA-NQVLGVSSKATSVTTYKIEDSFVTAVLAEETRAFALN 241
Query: 498 LQLEYVGKILSTKENSL 548
Q GKI+S ++ L
Sbjct: 242 FQQTIAGKIVSKQKLEL 258
>sp|P59137|RR4_CATCI Chloroplast 30S ribosomal protein S4
Length = 202
Score = 30.8 bits (68), Expect = 2.7
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Frame = +3
Query: 201 NGFVVHIPRYGIKGSVF--LKKQDNSIAWLKKKAESFQKLGKVNRVEWLTDE------AV 356
NG++V IP Y K F +K Q S + K E +QK N + + + E +
Sbjct: 120 NGYIVDIPSYRCKPQDFITIKNQRKSETIISKNIEFYQKYKIPNHLIYNSLEKKGLVNQI 179
Query: 357 IENESFQQSINKVTVI 404
+++ES IN++ V+
Sbjct: 180 LDHESIGLKINELLVV 195
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,090,087
Number of Sequences: 369166
Number of extensions: 1492903
Number of successful extensions: 4395
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4391
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)