Planaria EST Database


DrC_02767

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02767
         (760 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BU11|CN092_MOUSE  Epidermal Langerhans cell protein LCP1      47   6e-05
sp|O94842|CN092_HUMAN  Epidermal Langerhans cell protein LCP1      47   7e-05
sp|Q99PM1|CN092_RAT  Epidermal Langerhans cell protein LCP1        47   7e-05
sp|Q758N2|ATG13_ASHGO  Autophagy-related protein 13                31   3.2  
sp|P54995|SOXA_RHOSG  Dibenzothiophene desulfurization enzyme A    30   9.2  
sp|P46616|AA2AR_CAVPO  Adenosine A2a receptor                      30   9.2  
>sp|Q8BU11|CN092_MOUSE Epidermal Langerhans cell protein LCP1
          Length = 619

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 104 CKYDSCTNKPVQDNRWDGQYCSAKCLINDCRDTFQNWLVEQ 226
           C    C N PV    WD +YCS +C++  CRD F  W+  +
Sbjct: 570 CVRSGCENPPVVSKDWDNEYCSNECVVKHCRDVFLAWVASR 610
>sp|O94842|CN092_HUMAN Epidermal Langerhans cell protein LCP1
          Length = 621

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 104 CKYDSCTNKPVQDNRWDGQYCSAKCLINDCRDTFQNWLVEQ 226
           C    C N P+    WD +YCS +C++  CRD F  W+  +
Sbjct: 572 CVRSGCENPPIVSKDWDNEYCSNECVVKHCRDVFLAWVASR 612
>sp|Q99PM1|CN092_RAT Epidermal Langerhans cell protein LCP1
          Length = 619

 Score = 46.6 bits (109), Expect = 7e-05
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 104 CKYDSCTNKPVQDNRWDGQYCSAKCLINDCRDTFQNWLVEQ 226
           C    C N PV    WD +YCS +C++  CRD F  W+  +
Sbjct: 570 CVRSGCENPPVISKDWDNEYCSNECVVKHCRDVFLAWVASR 610
>sp|Q758N2|ATG13_ASHGO Autophagy-related protein 13
          Length = 659

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
 Frame = +2

Query: 17  SLFSYRSTTANNDYLSE-TSLNYVANAMET--CKYDSCTNKPVQDNRWDGQYCSAKCLIN 187
           SL  ++S  +NND LSE  S++Y          +Y S ++ P+       QY S    ++
Sbjct: 442 SLVRFQSMKSNNDTLSEDLSMSYSLEPTHAPQVRYRSNSHSPIPSISPSVQYTSIPMRLS 501

Query: 188 DCRDTFQNWLVEQKQTV----TPSAEINGTNSKSPRLSLTGDDE 307
             R+  Q  L  +K +     T  +   G+ S+S R S  G ++
Sbjct: 502 QSRNVSQTELASRKNSAERLKTLISSRTGSFSESRRQSNAGQED 545
>sp|P54995|SOXA_RHOSG Dibenzothiophene desulfurization enzyme A
          Length = 453

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 5   NSRHSLFSYRSTTANNDYLSETSLNYVANAMETCKYD 115
           N  H+  ++R T A+ND+LS     ++A  +E  K+D
Sbjct: 17  NVTHAHGAWRHTDASNDFLSGKYYQHIARTLERGKFD 53
>sp|P46616|AA2AR_CAVPO Adenosine A2a receptor
          Length = 409

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 262 SVDFCRWCHGLLLFH*PILECISAVID*ALGGTILAIPTVVLDRFICARI 113
           S  FC  CHG L F      C   V+      +I ++ T+ +DR+I  RI
Sbjct: 64  STGFCAACHGCLFF-----ACFVLVL---TQSSIFSLLTITIDRYIAIRI 105
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,521,653
Number of Sequences: 369166
Number of extensions: 1726771
Number of successful extensions: 4697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4692
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)