Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02767
(760 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BU11|CN092_MOUSE Epidermal Langerhans cell protein LCP1 47 6e-05
sp|O94842|CN092_HUMAN Epidermal Langerhans cell protein LCP1 47 7e-05
sp|Q99PM1|CN092_RAT Epidermal Langerhans cell protein LCP1 47 7e-05
sp|Q758N2|ATG13_ASHGO Autophagy-related protein 13 31 3.2
sp|P54995|SOXA_RHOSG Dibenzothiophene desulfurization enzyme A 30 9.2
sp|P46616|AA2AR_CAVPO Adenosine A2a receptor 30 9.2
>sp|Q8BU11|CN092_MOUSE Epidermal Langerhans cell protein LCP1
Length = 619
Score = 47.0 bits (110), Expect = 6e-05
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 104 CKYDSCTNKPVQDNRWDGQYCSAKCLINDCRDTFQNWLVEQ 226
C C N PV WD +YCS +C++ CRD F W+ +
Sbjct: 570 CVRSGCENPPVVSKDWDNEYCSNECVVKHCRDVFLAWVASR 610
>sp|O94842|CN092_HUMAN Epidermal Langerhans cell protein LCP1
Length = 621
Score = 46.6 bits (109), Expect = 7e-05
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 104 CKYDSCTNKPVQDNRWDGQYCSAKCLINDCRDTFQNWLVEQ 226
C C N P+ WD +YCS +C++ CRD F W+ +
Sbjct: 572 CVRSGCENPPIVSKDWDNEYCSNECVVKHCRDVFLAWVASR 612
>sp|Q99PM1|CN092_RAT Epidermal Langerhans cell protein LCP1
Length = 619
Score = 46.6 bits (109), Expect = 7e-05
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 104 CKYDSCTNKPVQDNRWDGQYCSAKCLINDCRDTFQNWLVEQ 226
C C N PV WD +YCS +C++ CRD F W+ +
Sbjct: 570 CVRSGCENPPVISKDWDNEYCSNECVVKHCRDVFLAWVASR 610
>sp|Q758N2|ATG13_ASHGO Autophagy-related protein 13
Length = 659
Score = 31.2 bits (69), Expect = 3.2
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Frame = +2
Query: 17 SLFSYRSTTANNDYLSE-TSLNYVANAMET--CKYDSCTNKPVQDNRWDGQYCSAKCLIN 187
SL ++S +NND LSE S++Y +Y S ++ P+ QY S ++
Sbjct: 442 SLVRFQSMKSNNDTLSEDLSMSYSLEPTHAPQVRYRSNSHSPIPSISPSVQYTSIPMRLS 501
Query: 188 DCRDTFQNWLVEQKQTV----TPSAEINGTNSKSPRLSLTGDDE 307
R+ Q L +K + T + G+ S+S R S G ++
Sbjct: 502 QSRNVSQTELASRKNSAERLKTLISSRTGSFSESRRQSNAGQED 545
>sp|P54995|SOXA_RHOSG Dibenzothiophene desulfurization enzyme A
Length = 453
Score = 29.6 bits (65), Expect = 9.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 5 NSRHSLFSYRSTTANNDYLSETSLNYVANAMETCKYD 115
N H+ ++R T A+ND+LS ++A +E K+D
Sbjct: 17 NVTHAHGAWRHTDASNDFLSGKYYQHIARTLERGKFD 53
>sp|P46616|AA2AR_CAVPO Adenosine A2a receptor
Length = 409
Score = 29.6 bits (65), Expect = 9.2
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 262 SVDFCRWCHGLLLFH*PILECISAVID*ALGGTILAIPTVVLDRFICARI 113
S FC CHG L F C V+ +I ++ T+ +DR+I RI
Sbjct: 64 STGFCAACHGCLFF-----ACFVLVL---TQSSIFSLLTITIDRYIAIRI 105
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,521,653
Number of Sequences: 369166
Number of extensions: 1726771
Number of successful extensions: 4697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4692
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)