Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02764
(589 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O93849|PYRE_COCIM Orotate phosphoribosyltransferase (OPR... 33 0.69
sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalyti... 32 0.90
sp|Q6PP79|MATK_VIGSU Maturase K (Intron maturase) 30 3.4
sp|Q04693|RSE1_YEAST Pre-mRNA splicing factor RSE1 (RNA spl... 30 4.5
sp|P33693|EXOK_RHIME Endo-1,3-1,4-beta-glycanase exoK precu... 30 5.8
sp|P97436|NKX31_MOUSE Homeobox protein Nkx-3.1 30 5.8
sp|Q8JI39|CRVP_TRIFL Triflin precursor 29 7.6
sp|P47941|CRKL_MOUSE Crk-like protein 29 9.9
sp|Q822J8|VATA_CHLCV V-type ATP synthase alpha chain (V-typ... 29 9.9
>sp|O93849|PYRE_COCIM Orotate phosphoribosyltransferase (OPRT) (OPRTase)
Length = 238
Score = 32.7 bits (73), Expect = 0.69
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 232 SPNLYSRITKHLISRNFIFFASIRKKSGVNSGYYFS 125
SP+ + + HLIS + F S KSG NS Y+F+
Sbjct: 4 SPDYKTNLLSHLISNKVLSFGSYTLKSGRNSPYFFT 39
>sp|P78527|PRKDC_HUMAN DNA-dependent protein kinase catalytic subunit (DNA-PKcs) (DNPK1)
(p460)
Length = 4128
Score = 32.3 bits (72), Expect = 0.90
Identities = 20/65 (30%), Positives = 31/65 (47%)
Frame = -3
Query: 368 PFFQHTFPH*LLREQCKVLQDGLYDLQQQHCLVKLRFLPIAMHIHVPKLVLPYHKAPHIE 189
PF+Q T+ ++R + K+L G D L F+ AMH + K +L H + +
Sbjct: 3034 PFYQETYLPYMIRSKLKLLLQGEADQSL------LTFIDKAMHGELQKAILELHYSQELS 3087
Query: 188 EFYLL 174
YLL
Sbjct: 3088 LLYLL 3092
>sp|Q6PP79|MATK_VIGSU Maturase K (Intron maturase)
Length = 504
Score = 30.4 bits (67), Expect = 3.4
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 511 EDIFLFYKNRKFKSLPTTQLVSVTQYFVFKNFMFLICKW-HICAFMRRCHF 362
+DIF+ Y + KS+ VFKN FLI KW + F+ +CHF
Sbjct: 269 KDIFIHYVRYQGKSI-----------LVFKNTPFLINKWKYYYIFLWQCHF 308
>sp|Q04693|RSE1_YEAST Pre-mRNA splicing factor RSE1 (RNA splicing and ER to Golgi
transport factor 1) (Spliceosome associated protein 130)
Length = 1361
Score = 30.0 bits (66), Expect = 4.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 22 IMASRRIWSSTI*CHSSTSWIIYSTNKNW 108
I +S W S + CHSS++W+ Y+ W
Sbjct: 808 INSSGAKWMSCVVCHSSSTWVSYTWKNVW 836
>sp|P33693|EXOK_RHIME Endo-1,3-1,4-beta-glycanase exoK precursor (Succinoglycan
biosynthesis protein exoK)
Length = 269
Score = 29.6 bits (65), Expect = 5.8
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Frame = +2
Query: 80 GLYIARTRTGDDITVGKVVAGIYTGFFSYAGKEDKIPR----YEVLCDTGVQVWGHEYAW 247
G Y AR + D +G+ + FF+Y G DK P +EVL +V ++Y
Sbjct: 106 GTYEARIKAADG-------SGLNSAFFTYIGPADKKPHDEIDFEVLGKNTAKVQINQYVS 158
Query: 248 QSAGNGALPNNAVVGG 295
GN L + V GG
Sbjct: 159 AKGGNEFLAD--VPGG 172
>sp|P97436|NKX31_MOUSE Homeobox protein Nkx-3.1
Length = 237
Score = 29.6 bits (65), Expect = 5.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Frame = -1
Query: 520 QNSEDIFLFYKNR-------KFKSLPTTQLVSVTQYFVFKNFMFLICKWH 392
Q SED+ + KN K SLP+T LVSV + + +++ + WH
Sbjct: 184 QLSEDLGVLEKNSPLSLPALKDDSLPSTSLVSVYTSYPYYPYLYCLGSWH 233
>sp|Q8JI39|CRVP_TRIFL Triflin precursor
Length = 240
Score = 29.3 bits (64), Expect = 7.6
Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Frame = +2
Query: 218 VQVWGHEYAWQSAGNGALPNNAVVGGHTNHLEALYIARAKVNGEMCVGKMAPSHK----- 382
+ W EY G GA+P++AV+G +T I K C PS K
Sbjct: 109 IHAWHGEYKDFKYGVGAVPSDAVIGHYTQ------IVWYKSYRAGCAAAYCPSSKYSYFY 162
Query: 383 -CAYMPFAN 406
C Y P N
Sbjct: 163 VCQYCPAGN 171
>sp|P47941|CRKL_MOUSE Crk-like protein
Length = 303
Score = 28.9 bits (63), Expect = 9.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 258 PADCHAYSCPQTCTPVSQSTSYRG-ILSSLPA*EKNPV 148
P HAY+ PQT TP+ S G ++ LP+ + PV
Sbjct: 201 PEPAHAYAQPQTTTPLPTVASTPGAAINPLPSTQNGPV 238
>sp|Q822J8|VATA_CHLCV V-type ATP synthase alpha chain (V-type ATPase subunit A)
Length = 591
Score = 28.9 bits (63), Expect = 9.9
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 138 PEFTPDFFLMLAKKIKFLDMRCFVIREYKFGDMNMHGNRQETELYQT 278
P+ FFL L KIK L+ + F+ EYK G M + ET++ QT
Sbjct: 545 PDNARSFFLELQSKIKTLNGQKFLSEEYKEG-MEVVLRLLETKMVQT 590
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,530,868
Number of Sequences: 369166
Number of extensions: 1640291
Number of successful extensions: 4149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4140
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4406202450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)