Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02763
(263 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1D1|IF34_MOUSE Eukaryotic translation initiation fact... 94 1e-19
sp|O75821|IF34_HUMAN Eukaryotic translation initiation fact... 94 1e-19
sp|Q19706|IF34_CAEEL Probable eukaryotic translation initia... 63 2e-10
sp|P78795|IF34_SCHPO Probable eukaryotic translation initia... 62 3e-10
sp|Q04067|IF34_YEAST Eukaryotic translation initiation fact... 54 8e-08
sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein 51 9e-07
sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 (RNA-bi... 50 2e-06
sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein (G... 50 2e-06
sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A 50 2e-06
sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 (RNA-bi... 49 3e-06
>sp|Q9Z1D1|IF34_MOUSE Eukaryotic translation initiation factor 3 subunit 4 (eIF-3 delta)
(eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42)
(Eif3p42) (eIF3g)
Length = 320
Score = 93.6 bits (231), Expect = 1e-19
Identities = 40/66 (60%), Positives = 55/66 (83%)
Frame = +2
Query: 8 QESDLDDLFRPFGSISRTFLVKDRQTGLSRGFAYVTFNNRVDGAKAIEGVNGFGYDHCIL 187
+E+DL +LFRPFGSISR +L KD+ TG S+GFA+++F+ R D A+AI GV+GFGYDH IL
Sbjct: 251 RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 310
Query: 188 QVQWSE 205
V+W++
Sbjct: 311 NVEWAK 316
>sp|O75821|IF34_HUMAN Eukaryotic translation initiation factor 3 subunit 4 (eIF-3 delta)
(eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42)
(eIF3g)
Length = 320
Score = 93.6 bits (231), Expect = 1e-19
Identities = 40/66 (60%), Positives = 55/66 (83%)
Frame = +2
Query: 8 QESDLDDLFRPFGSISRTFLVKDRQTGLSRGFAYVTFNNRVDGAKAIEGVNGFGYDHCIL 187
+E+DL +LFRPFGSISR +L KD+ TG S+GFA+++F+ R D A+AI GV+GFGYDH IL
Sbjct: 251 RETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 310
Query: 188 QVQWSE 205
V+W++
Sbjct: 311 NVEWAK 316
>sp|Q19706|IF34_CAEEL Probable eukaryotic translation initiation factor 3 subunit 4
(eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit)
(eIF3g)
Length = 256
Score = 62.8 bits (151), Expect = 2e-10
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +2
Query: 11 ESDLDDLFRPFGSISRTFLVKDRQTGLSRGFAYVTFNNRVDGAKAIEGVNGFGYDHCILQ 190
E +L DLF G + R F+ +D+ TGL +GFA+VTF +R D A+AI +N H +L+
Sbjct: 189 EDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDDAARAIAELNDIRMYHMVLK 248
Query: 191 VQWS 202
V+W+
Sbjct: 249 VEWT 252
>sp|P78795|IF34_SCHPO Probable eukaryotic translation initiation factor 3 RNA-binding
subunit (eIF-3 RNA-binding subunit) (eIF3 p33)
(Translation initiation factor eIF3, p33 subunit)
Length = 282
Score = 62.4 bits (150), Expect = 3e-10
Identities = 27/66 (40%), Positives = 49/66 (74%)
Frame = +2
Query: 8 QESDLDDLFRPFGSISRTFLVKDRQTGLSRGFAYVTFNNRVDGAKAIEGVNGFGYDHCIL 187
+E +L DLFR FG I R +L KD++TG ++GFA+V++ +R KA + ++G+G+++ IL
Sbjct: 214 REEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLIL 273
Query: 188 QVQWSE 205
+ ++S+
Sbjct: 274 RCEFSK 279
>sp|Q04067|IF34_YEAST Eukaryotic translation initiation factor 3 RNA-binding subunit
(eIF-3 RNA-binding subunit) (eIF3 p33) (Translation
initiation factor eIF3, p33 subunit)
Length = 274
Score = 54.3 bits (129), Expect = 8e-08
Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Frame = +2
Query: 5 AQESDL-DDLFRPFGSISRTFLVKDRQTGLSRGFAYVTFNNRVDGAKAIEGVNGFGYDHC 181
A E+ L ++L PF I R +V++++TG SRG A+VTF++ +A+ ++G GY +
Sbjct: 202 ADENSLREELLFPFAPIPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNL 261
Query: 182 ILQVQWSE 205
IL+V+WS+
Sbjct: 262 ILRVEWSK 269
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein
Length = 157
Score = 50.8 bits (120), Expect = 9e-07
Identities = 23/54 (42%), Positives = 33/54 (61%)
Frame = +2
Query: 2 AAQESDLDDLFRPFGSISRTFLVKDRQTGLSRGFAYVTFNNRVDGAKAIEGVNG 163
A + L+ F FG I+ + ++ DR+TG SRGF +VTF + AIEG+NG
Sbjct: 16 ATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNG 69
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 (RNA-binding motif protein 3)
Length = 153
Score = 49.7 bits (117), Expect = 2e-06
Identities = 24/55 (43%), Positives = 32/55 (58%)
Frame = +2
Query: 11 ESDLDDLFRPFGSISRTFLVKDRQTGLSRGFAYVTFNNRVDGAKAIEGVNGFGYD 175
E L+D F FG IS +VKDR+T SRGF ++TF N + A+ +NG D
Sbjct: 19 EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLD 73
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein (Glycine-rich RNA-binding
protein CIRP) (A18 hnRNP)
Length = 172
Score = 49.7 bits (117), Expect = 2e-06
Identities = 24/55 (43%), Positives = 32/55 (58%)
Frame = +2
Query: 11 ESDLDDLFRPFGSISRTFLVKDRQTGLSRGFAYVTFNNRVDGAKAIEGVNGFGYD 175
E L+ +F +G IS +VKDR+T SRGF +VTF N D A+ +NG D
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 73
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A
Length = 169
Score = 49.7 bits (117), Expect = 2e-06
Identities = 24/58 (41%), Positives = 33/58 (56%)
Frame = +2
Query: 2 AAQESDLDDLFRPFGSISRTFLVKDRQTGLSRGFAYVTFNNRVDGAKAIEGVNGFGYD 175
A E L+ F FG + + ++ DR+TG SRGF +VTF + AIEG+NG D
Sbjct: 18 ATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLD 75
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 (RNA-binding motif protein 3) (RNPL)
Length = 157
Score = 49.3 bits (116), Expect = 3e-06
Identities = 24/55 (43%), Positives = 32/55 (58%)
Frame = +2
Query: 11 ESDLDDLFRPFGSISRTFLVKDRQTGLSRGFAYVTFNNRVDGAKAIEGVNGFGYD 175
E L+D F FG IS +VKDR+T SRGF ++TF N + A+ +NG D
Sbjct: 19 EQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLD 73
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,298,500
Number of Sequences: 369166
Number of extensions: 551669
Number of successful extensions: 1917
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1910
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)