Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02756
(454 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P75318|Y465_MYCPN Hypothetical protein MPN465 (P01_orf199) 38 0.009
sp|O74486|WTF19_SCHPO Hypothetical protein wtf19 36 0.034
sp|P15305|DYHC_ONCMY Dynein heavy chain (DYHC) 36 0.034
sp|P83990|CU125_LOCMI Cuticle protein 12.5 (LM-12.5) (LM-AC... 35 0.059
sp|P76072|STFR_ECOLI Side tail fiber protein homolog from l... 35 0.059
sp|P75077|Y037_MYCPN Hypothetical protein MPN037 (B01_orf147) 35 0.10
sp|P05790|FIBH_BOMMO Fibroin heavy chain precursor (Fib-H) ... 35 0.10
sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testi... 35 0.10
sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 (RNA-binding m... 33 0.38
sp|Q05738|SRY_MOUSE Sex-determining region Y protein (Testi... 33 0.38
>sp|P75318|Y465_MYCPN Hypothetical protein MPN465 (P01_orf199)
Length = 199
Score = 38.1 bits (87), Expect = 0.009
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Frame = -3
Query: 419 CKEWSSCIPITWSSCIPITSLLVSKWSSCIPITWSSCIPITSLLVSKWSSCIPITWSSCI 240
C WSS I S + ++ L+ S W S W C P S + C P W++
Sbjct: 67 CSTWSSLICSPCFSTVWVSLLICSPWRSTTWTNWLICSPCFSTVWVNLLICSP--WAA-- 122
Query: 239 PITSLLVSKW--SSCIPITSLLVSHWSSCIPITSLLVSNWSSCIPITSLLVSQWSSCILF 66
+ S+ VS+W + SL V+ +S IT LL N LL +S +LF
Sbjct: 123 KVVSIFVSRWLFEFLYSLNSLRVT-YSVFTGITGLLSLN--------CLLNLPENSTLLF 173
Query: 65 ASLLVSQ 45
+ L++ Q
Sbjct: 174 SGLMMYQ 180
Score = 36.2 bits (82), Expect = 0.034
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = -3
Query: 293 LLVSKWSS-CIPITWSSCIPITSLLVSKWSSCIPITSLLVSHWSSCIPITSLLVSNWSSC 117
L V W+ C P W+ C +SL+ S S + ++ L+ S W S L+ S S
Sbjct: 52 LSVFPWAFICSP--WNFCSTWSSLICSPCFSTVWVSLLICSPWRSTTWTNWLICSPCFST 109
Query: 116 IPITSLLVSQWSSCILFASLLVSQWSSCILFAI 18
+ + L+ S W++ ++ S+ VS+W L+++
Sbjct: 110 VWVNLLICSPWAAKVV--SIFVSRWLFEFLYSL 140
Score = 35.4 bits (80), Expect = 0.059
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = -3
Query: 296 SLLVSKWSSCIPITWSS--CIPITSLLVSKWSSCIPITSLLVSHWSSCIPITSLLVSNWS 123
+ + S W+ C TWSS C P S + C P S ++W C P S + N
Sbjct: 58 AFICSPWNFCS--TWSSLICSPCFSTVWVSLLICSPWRSTTWTNWLICSPCFSTVWVNLL 115
Query: 122 SCIP----ITSLLVSQW 84
C P + S+ VS+W
Sbjct: 116 ICSPWAAKVVSIFVSRW 132
Score = 32.7 bits (73), Expect = 0.38
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Frame = -3
Query: 359 LLVSKWSS-CIPITWSSCIPITSLLVSKWSSCIPITWSSCIPITSLLVSKWSSCIP---- 195
L V W+ C P W+ C +SL+ S S + ++ C P S + W C P
Sbjct: 52 LSVFPWAFICSP--WNFCSTWSSLICSPCFSTVWVSLLICSPWRSTTWTNWLICSPCFST 109
Query: 194 --ITSLLVSHWSSCIPITSLLVSNW 126
+ L+ S W++ + S+ VS W
Sbjct: 110 VWVNLLICSPWAA--KVVSIFVSRW 132
Score = 29.3 bits (64), Expect = 4.2
Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 12/116 (10%)
Frame = -3
Query: 431 NLSSCKEWSSCIPITWSSCIPITSLLVSKWSSCIPITWSSCIPITSLLVSKW-------S 273
+L C W S W C P S + C P W++ + S+ VS+W
Sbjct: 85 SLLICSPWRSTTWTNWLICSPCFSTVWVNLLICSP--WAA--KVVSIFVSRWLFEFLYSL 140
Query: 272 SCIPITWSSCIPITSLLVSKWSSCIP-----ITSLLVSHWSSCIPITSLLVSNWSS 120
+ + +T+S IT LL +P + S L+ + +P +W+S
Sbjct: 141 NSLRVTYSVFTGITGLLSLNCLLNLPENSTLLFSGLMMYQPEKVPFLVFFTMSWNS 196
>sp|O74486|WTF19_SCHPO Hypothetical protein wtf19
Length = 393
Score = 36.2 bits (82), Expect = 0.034
Identities = 25/131 (19%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Frame = -3
Query: 389 TWSSCIPITSLLVSKWSSCIPITWSSCIPITSLLVSKWSSCIPITWSSCIPITSLLVSKW 210
TW + +T + +++ + + C+ +TS+ ++K + + C+ +T++ +++
Sbjct: 160 TWIKAVKVTVIFLAQCIKVTVVFLAQCVKVTSISLAKCVKLTAVFLAQCVKVTAVFLAQC 219
Query: 209 SSCIPI------TSLLVSHWSSCIPITSLLVSNWSSCIPITSLLVSQ---WSSCILFASL 57
I I +++ W + I +L C+ L +++ +S+C + A L
Sbjct: 220 VKVISIGLFNIRREMMIIIWLLWLIICCILF----GCVKSGDLNLNKALIYSTCTISAVL 275
Query: 56 LVSQWSSCILF 24
L+ S CI F
Sbjct: 276 LLIVSSVCIPF 286
>sp|P15305|DYHC_ONCMY Dynein heavy chain (DYHC)
Length = 515
Score = 36.2 bits (82), Expect = 0.034
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 3/137 (2%)
Frame = -2
Query: 411 VVQLHTHNLVQLHTHNLS--SCKQVVQLHTHNLVQLHTHNLSSCKQVVQLHTHNLVQLHT 238
V+Q T N++Q T ++ S V+Q +++Q H + V Q +++Q
Sbjct: 66 VIQYSTLNVIQYSTLHVIQYSTLHVIQYSILHVIQYSIHVIQYSIHVTQYSILHVIQYSI 125
Query: 237 HNLSSCKQVVQLHTHNLSSCKPLVQLHTHNLS-SCKQLVQLHTHNLSSCKPVVQLHTLRL 61
H + V+Q TH + ++Q H + S ++Q H + V+Q T +
Sbjct: 126 HVIQYSIHVIQYSTHVIQYSIHVIQYSIHVIQYSILHVIQYSIHVIQYSIHVIQYSTHVI 185
Query: 60 SSCKPVVQLHTLRHIRF 10
V+Q L I++
Sbjct: 186 QYSIHVIQYSILHVIQY 202
>sp|P83990|CU125_LOCMI Cuticle protein 12.5 (LM-12.5) (LM-ACP 12.5)
Length = 129
Score = 35.4 bits (80), Expect = 0.059
Identities = 23/57 (40%), Positives = 25/57 (43%)
Frame = +3
Query: 33 AAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGYA 203
A PLAY +A PL Y YG A A GYGY A A GYG+A
Sbjct: 72 AHAPLAYAAPAVAHA--PLGYAAPAYGVARYAAAAPALGYGYGAYGYAAPALGYGHA 126
Score = 28.5 bits (62), Expect = 7.2
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +3
Query: 75 AAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGYAA 206
A PLAY +A P+ Y YG A A GYGY A
Sbjct: 72 AHAPLAYAAPAVAHA--PLGYAAPAYGVARYAAAAPALGYGYGA 113
>sp|P76072|STFR_ECOLI Side tail fiber protein homolog from lambdoid prophage Rac
Length = 1120
Score = 35.4 bits (80), Expect = 0.059
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = -2
Query: 375 HTHNLSSCKQVVQLHTHNLVQLHTHNL-----SSCKQVVQLHTHNLVQ----LHTHNLSS 223
HTH++S HTH+L ++T + S+ ++ +H N HTH+LS
Sbjct: 1007 HTHSVSGSTNSAGAHTHSLANVNTASANSGAGSASTRLSVVHNQNYATSSAGAHTHSLSG 1066
Query: 222 CKQVVQLHTHNLSSCKPLVQLHTHNLS 142
H H + + HTH+++
Sbjct: 1067 TAASAGAHAHTVG-----IGAHTHSVA 1088
>sp|P75077|Y037_MYCPN Hypothetical protein MPN037 (B01_orf147)
Length = 147
Score = 34.7 bits (78), Expect = 0.10
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Frame = -3
Query: 419 CKEWSSCIPITWSSCIPITSLLVSKWSSCIPITWSSCIPITSLLVSKWS-------SCIP 261
C WSS I W+ TS+ S SS I W+ S+ VS+WS + +
Sbjct: 18 CSTWSSLICWPWTIT---TSVSRSTLSSTTWILWTWLFNSVSIFVSRWSFDFLYSLNSLR 74
Query: 260 ITWSSCIPITSLLVSKWSSCIPITSLLVSHWSSCIPITSLLVSNWSSCIPITSLLVSQWS 81
+T+S IT LL +P S L+ S + ++S C I +++S
Sbjct: 75 VTYSVFTGITGLLSLNCLLKLPENSTLLLSLSIIYQPEKVPFWSFSPCHEILFRYKTEFS 134
Query: 80 SCILFASLLVSQ 45
+ S L S+
Sbjct: 135 LSLSHTSFLFSE 146
>sp|P05790|FIBH_BOMMO Fibroin heavy chain precursor (Fib-H) (H-fibroin)
Length = 5263
Score = 34.7 bits (78), Expect = 0.10
Identities = 26/64 (40%), Positives = 26/64 (40%)
Frame = +3
Query: 18 YGEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYG 197
YG AG A G Y G A GYG AG A G GY AG A GYG
Sbjct: 171 YGAASGAGAGAGAGAGAGYGTGAGAGAGAGYGAGAGAGA----GAGYGAGAGAGAGAGYG 226
Query: 198 YAAG 209
AG
Sbjct: 227 AGAG 230
Score = 33.9 bits (76), Expect = 0.17
Identities = 27/63 (42%), Positives = 28/63 (44%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G Y AG A G Y AG A GYG AG A G GY AG A GYG
Sbjct: 210 GAGYGAG--AGAGAGAGYGAGAGAGAGAGYGAGAGAGA----GAGYGAGAGAGAGAGYGA 263
Query: 201 AAG 209
A+G
Sbjct: 264 ASG 266
Score = 33.5 bits (75), Expect = 0.22
Identities = 27/63 (42%), Positives = 27/63 (42%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G Y AG A G Y AG A GYG AG A G GY AG A GYG
Sbjct: 198 GAGYGAG--AGAGAGAGYGAGAGAGAGAGYGAGAGAGA----GAGYGAGAGAGAGAGYGA 251
Query: 201 AAG 209
AG
Sbjct: 252 GAG 254
Score = 31.6 bits (70), Expect = 0.85
Identities = 24/64 (37%), Positives = 25/64 (39%)
Frame = +3
Query: 18 YGEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYG 197
YG Y AG A G Y AG GYG AG A G G AG + G G
Sbjct: 4928 YGAGYGAGVGAGYGAGAGYGAGYGVGAGAGYGAGAGSGAGSGAGAGSGAGAGSGAGAGSG 4987
Query: 198 YAAG 209
AG
Sbjct: 4988 AGAG 4991
Score = 30.8 bits (68), Expect = 1.4
Identities = 24/63 (38%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G Y G GYG AG A G GY AG A GYG
Sbjct: 346 GAGAGAGAGAGAGAGAGYGTGA------GYGAGAGAGAGAGAGAGYGAGAGAGYGAGYGV 399
Query: 201 AAG 209
AG
Sbjct: 400 GAG 402
Score = 30.0 bits (66), Expect = 2.5
Identities = 24/64 (37%), Positives = 25/64 (39%)
Frame = +3
Query: 18 YGEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYG 197
YG Y AG G Y AG G G +G A G GY AG A GYG
Sbjct: 2070 YGAGYGAGA------GAGYGAGA------GSGAGSGAGAGSGAGAGYGAGAGAGYGAGYG 2117
Query: 198 YAAG 209
AG
Sbjct: 2118 AGAG 2121
Score = 30.0 bits (66), Expect = 2.5
Identities = 24/63 (38%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G Y AG A G GY AG GYG AG A G G
Sbjct: 4915 GSGAGAGSGAGAGYGAGYGAGVGAGYGAGAGYGAGYGVGAGAGYGAGAGSGAGSGAGAGS 4974
Query: 201 AAG 209
AG
Sbjct: 4975 GAG 4977
Score = 29.6 bits (65), Expect = 3.2
Identities = 25/63 (39%), Positives = 27/63 (42%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G Y AG A G Y AG A G GY AG A GYG A+G A G G
Sbjct: 222 GAGYGAG--AGAGAGAGYGAG--AGAGAGAGYGAGAGAGAGAGYGAASGAGAGAGYGQGV 277
Query: 201 AAG 209
+G
Sbjct: 278 GSG 280
Score = 29.6 bits (65), Expect = 3.2
Identities = 25/63 (39%), Positives = 26/63 (41%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G Y AG A G Y AG A GYG A+G A GYG G A G G
Sbjct: 234 GAGYGAG--AGAGAGAGYGAGAGAGAGAGYGAASGAGA--GAGYGQGVGSGAASGAGAGA 289
Query: 201 AAG 209
AG
Sbjct: 290 GAG 292
Score = 29.6 bits (65), Expect = 3.2
Identities = 22/64 (34%), Positives = 25/64 (39%)
Frame = +3
Query: 18 YGEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYG 197
YG +G + G AG A G G +G A G GY AG A GYG
Sbjct: 2459 YGAGAGSGAASGAGAGSGAGAGSGAGAGSGAGAGSGAGAGSGAGAGYGAGVGAGYGAGYG 2518
Query: 198 YAAG 209
AG
Sbjct: 2519 AGAG 2522
Score = 29.6 bits (65), Expect = 3.2
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G Y AG + G AG A G G AG A G GY AG GYG
Sbjct: 3863 GAGYGAGAGSGAASGAGAGAGAGAGSGAGAGSGAGAGAGSGAGAGYGAGYGIGVGAGYGA 3922
Query: 201 AAG 209
AG
Sbjct: 3923 GAG 3925
Score = 29.3 bits (64), Expect = 4.2
Identities = 24/58 (41%), Positives = 24/58 (41%)
Frame = +3
Query: 36 AGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGYAAG 209
AG A G Y AG A GYG AG A GYG AG A G G AG
Sbjct: 373 AGAGAGAGAGAGYGAGAGAGYGAGYGVGAG--AGYGAGYGAGAGSGAASGAGSGAGAG 428
Score = 29.3 bits (64), Expect = 4.2
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G +G A G GY AG A GYG AG A G G
Sbjct: 1162 GSGAGAGSGAGAGSGAGAGSGAGAGSGAGVGYGAGYGAGAGAGYGAGAGSGAASGAGAGA 1221
Query: 201 AAG 209
AG
Sbjct: 1222 GAG 1224
Score = 29.3 bits (64), Expect = 4.2
Identities = 24/63 (38%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G Y AG G Y AG A GYG AG A G G AG G GY
Sbjct: 2059 GAGYGAGV------GAGYGAGYGAGAGAGYGAGAGSGAGSGAGAGSGAGAGYGAGAGAGY 2112
Query: 201 AAG 209
AG
Sbjct: 2113 GAG 2115
Score = 29.3 bits (64), Expect = 4.2
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G Y AG A GYG AG G G +G A G GY
Sbjct: 2330 GAGAGAGAGAGSGAGAGYGAGVGAGYGAGYGAGAGAGYGAGAGSGTGSGAGAGSGAGAGY 2389
Query: 201 AAG 209
AG
Sbjct: 2390 GAG 2392
Score = 28.9 bits (63), Expect = 5.5
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +3
Query: 18 YGEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYA--AGPVAYKKRGYGYAAGPVAYKKRG 191
Y +++ G AAG A GYG A AG A G GY G A G
Sbjct: 141 YTSDFSTSAAVGAGAGAGAAAGSGAGAGAGYGAASGAGAGAGAGAGAGYGTGAGAGAGAG 200
Query: 192 YGYAAG 209
YG AG
Sbjct: 201 YGAGAG 206
Score = 28.9 bits (63), Expect = 5.5
Identities = 24/58 (41%), Positives = 26/58 (44%)
Frame = +3
Query: 36 AGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGYAAG 209
AG A G Y AG A GYG A+G A GYG AG GYG A+G
Sbjct: 299 AGAGAGTGAGAGYGAGAGAGAGAGYGAASGTGA----GYGAGAG------AGYGGASG 346
Score = 28.9 bits (63), Expect = 5.5
Identities = 23/63 (36%), Positives = 25/63 (39%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G EYA + G AG A G G +G A G GY AG A GYG
Sbjct: 1646 GYEYAWSSESDFGTGSGAGAGSGAGAGSGAGAGSGAGAGSGAGAGYGAGYGAGAGAGYGA 1705
Query: 201 AAG 209
AG
Sbjct: 1706 GAG 1708
Score = 28.9 bits (63), Expect = 5.5
Identities = 23/63 (36%), Positives = 25/63 (39%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G EYA + G AG A G G +G A G GY AG A GYG
Sbjct: 2627 GYEYAWSSESDFGTGSGAGAGSGAGAGSGAGAGSGAGAGSGAGAGYGAGVGAGYGAGYGA 2686
Query: 201 AAG 209
AG
Sbjct: 2687 GAG 2689
Score = 28.9 bits (63), Expect = 5.5
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G +G A G GY AG A GYG AG G GY
Sbjct: 4623 GSGAGAGSGAGAGSGAGAGSGAGAGSGAGAGYGAGYGAGAGAGYGAGAGVGYGAGAGAGY 4682
Query: 201 AAG 209
AG
Sbjct: 4683 GAG 4685
Score = 28.9 bits (63), Expect = 5.5
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G +G A G AG A G GY AG A G GY AG GYG
Sbjct: 4901 GAGAGSGAGAGSGAGSGAGAGSGAGAGYGAGYGAGVGAGYGAGAGYGAGYGVGAGAGYGA 4960
Query: 201 AAG 209
AG
Sbjct: 4961 GAG 4963
Score = 28.5 bits (62), Expect = 7.2
Identities = 24/63 (38%), Positives = 25/63 (39%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AAG A G A+G A G G G A G GY AG A GYG
Sbjct: 156 GAGAAAGSGAGAGAGYGAASGAGAGAGAGAGAGYGTGAGAGAGAGYGAGAGAGAGAGYGA 215
Query: 201 AAG 209
AG
Sbjct: 216 GAG 218
Score = 28.5 bits (62), Expect = 7.2
Identities = 24/63 (38%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G Y AG A GYG AG GYG AG A G G
Sbjct: 1269 GSGAGAGSGAGAGSGAGYGAGVGAGYGAGYGAGAGA------GYGAGAGSGAGSGAGAGS 1322
Query: 201 AAG 209
AG
Sbjct: 1323 GAG 1325
Score = 28.5 bits (62), Expect = 7.2
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G +G A G GY AG A GYG AG A G G
Sbjct: 1339 GSGAGAGSGAGAGSGAGAGSGAGAGSGAGAGYGAGYGAGAGAGYGAGAGSGAGSGAGAGS 1398
Query: 201 AAG 209
AG
Sbjct: 1399 GAG 1401
Score = 28.5 bits (62), Expect = 7.2
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G +G A G GY AG A GYG AG A G G
Sbjct: 1660 GSGAGAGSGAGAGSGAGAGSGAGAGSGAGAGYGAGYGAGAGAGYGAGAGSGAGSGAGAGS 1719
Query: 201 AAG 209
AG
Sbjct: 1720 GAG 1722
Score = 28.5 bits (62), Expect = 7.2
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G +G A G GY AG A GYG AG A G G
Sbjct: 2416 GSGAGAGSGAGAGSGAGAGSGAGAGSGAGAGYGAGYGAGVGAGYGAGAGSGAASGAGAGS 2475
Query: 201 AAG 209
AG
Sbjct: 2476 GAG 2478
Score = 28.5 bits (62), Expect = 7.2
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G +G A G GY AG A GYG AG G GY
Sbjct: 3133 GSGAGAGSGAGAGSGAGAGSGAGAGSGAGAGYGAGYGAGVGAGYGAGAGVGYGAGAGAGY 3192
Query: 201 AAG 209
AG
Sbjct: 3193 GAG 3195
Score = 28.5 bits (62), Expect = 7.2
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G AG A G +G A G GY AG A GYG AG G GY
Sbjct: 3957 GSGAGAGSGAGAGSGAGAGSGAGAGSGAGAGYGAGYGAGVGAGYGAGAGVGYGAGAGAGY 4016
Query: 201 AAG 209
AG
Sbjct: 4017 GAG 4019
Score = 28.1 bits (61), Expect = 9.4
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G +G A G Y AG G GY AG A GYG AG A G G
Sbjct: 724 GAGAGSGAGAGSGAGAGYGAGV------GVGYGAGYGAGAGAGYGAGAGSGAASGAGAGS 777
Query: 201 AAG 209
AG
Sbjct: 778 GAG 780
Score = 28.1 bits (61), Expect = 9.4
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G +G A G Y AG A GYG AG GYG AG A G G
Sbjct: 1014 GAGAGSGAGAGSGAGAGYGAGAGAGYGAGYGAGAGA------GYGAGAGSGAASGAGSGA 1067
Query: 201 AAG 209
AG
Sbjct: 1068 GAG 1070
Score = 28.1 bits (61), Expect = 9.4
Identities = 23/64 (35%), Positives = 25/64 (39%)
Frame = +3
Query: 18 YGEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYG 197
+G AG + G AG A G GY AG A GYG AG GYG
Sbjct: 1254 FGTGSGAGAGSGAGAGSGAGAGSGAGAGSGAGYGAGVGAGYGAGYGAGAG------AGYG 1307
Query: 198 YAAG 209
AG
Sbjct: 1308 AGAG 1311
Score = 28.1 bits (61), Expect = 9.4
Identities = 22/63 (34%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G +G A G Y AG A GYG AG G G +G A G GY
Sbjct: 2045 GAGAGSGAGAGSGAGAGYGAGVGAGYGAGYGAGAGAGYGAGAGSGAGSGAGAGSGAGAGY 2104
Query: 201 AAG 209
AG
Sbjct: 2105 GAG 2107
Score = 28.1 bits (61), Expect = 9.4
Identities = 23/63 (36%), Positives = 24/63 (38%)
Frame = +3
Query: 21 GEEYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGY 200
G +G A G Y AG A GYG AG GYG AG A G G
Sbjct: 2087 GSGAGSGAGAGSGAGAGYGAGAGAGYGAGYGAGAGA------GYGAGAGTGAGSGAGAGS 2140
Query: 201 AAG 209
AG
Sbjct: 2141 GAG 2143
Score = 28.1 bits (61), Expect = 9.4
Identities = 22/61 (36%), Positives = 24/61 (39%)
Frame = +3
Query: 27 EYAAGPLAYKKRGEEYAAGPLAYKKRGYGYAAGPVAYKKRGYGYAAGPVAYKKRGYGYAA 206
++ G A G AG A G GY AG A GYG AG GYG A
Sbjct: 2318 DFGTGSGAGAGSGAGAGAGAGAGSGAGAGYGAGVGAGYGAGYGAGAG------AGYGAGA 2371
Query: 207 G 209
G
Sbjct: 2372 G 2372
>sp|Q62563|SRY_MUSSP Sex-determining region Y protein (Testis-determining factor)
Length = 355
Score = 34.7 bits (78), Expect = 0.10
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Frame = -2
Query: 405 QLHTHNLV--QLHTHNLSSCKQVVQLHTHNLVQLHTHNLSSCKQVVQLHTHNLVQLHTHN 232
Q H H+ Q H H+ +Q Q H H Q H+ KQ H Q H H+
Sbjct: 159 QFHDHHQQKQQFHDHH----QQQQQFHDHQQQQQQFHDHQQQKQQFHDHQQQQQQFHDHH 214
Query: 231 LSSCKQVVQLHTHNLSSCKPLVQLHTHNLSSCKQLVQLHTHN 106
+Q H H+ + Q H H+ +Q Q H H+
Sbjct: 215 HQQQQQQFHDHHHHQQQQQ---QFHDHH----QQKQQFHDHH 249
Score = 33.1 bits (74), Expect = 0.29
Identities = 26/98 (26%), Positives = 38/98 (38%)
Frame = -2
Query: 399 HTHNLVQLHTHNLSSCKQVVQLHTHNLVQLHTHNLSSCKQVVQLHTHNLVQLHTHNLSSC 220
H Q H H+ +Q Q H H+ + H+ +Q Q H H Q H+
Sbjct: 215 HQQQQQQFHDHHHHQ-QQQQQFHDHHQQKQQFHDHHQQQQQQQFHDHPQQQQQFHDHPQQ 273
Query: 219 KQVVQLHTHNLSSCKPLVQLHTHNLSSCKQLVQLHTHN 106
KQ H H+ + Q H H+ +Q Q H H+
Sbjct: 274 KQQFHDHHHHQQQKQ---QFHDHH----QQKQQFHDHH 304
Score = 31.6 bits (70), Expect = 0.85
Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Frame = -2
Query: 405 QLHTHNLVQLHTHNLSSCKQVVQLHTHNLVQLHTHNLSSCKQVVQLHTHN---LVQLHTH 235
Q H H+ + H+ +Q Q H H Q H+ KQ H H+ Q H H
Sbjct: 234 QFHDHHQQKQQFHDHHQQQQQQQFHDHPQQQQQFHDHPQQKQQFHDHHHHQQQKQQFHDH 293
Query: 234 NLSSCKQVVQLHTHNLSSCKPLVQLHTHNLSSCKQLVQLHTHNLS 100
+ +Q Q H H+ + Q H H +Q Q H L+
Sbjct: 294 H----QQKQQFHDHH----QQQQQFHDHQQQQQQQ--QFHDQQLT 328
>sp|Q8C2Q3|RBM14_MOUSE RNA-binding protein 14 (RNA-binding motif protein 14)
Length = 669
Score = 32.7 bits (73), Expect = 0.38
Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +3
Query: 18 YGEEYAAGPLAYKKRGEEYAAGPLA-YKKRGYGYAAGPVA-YKKRGYGYAAGP---VAYK 182
YG + AA LAY + Y+A P A Y + YAA A Y + Y A P AY
Sbjct: 384 YGAQSAASSLAYGAQAASYSAQPSASYSAQSAPYAAQQAASYSSQPAAYVAQPATAAAYA 443
Query: 183 KRGYGYAA 206
+ YAA
Sbjct: 444 SQPAAYAA 451
>sp|Q05738|SRY_MOUSE Sex-determining region Y protein (Testis-determining factor)
Length = 395
Score = 32.7 bits (73), Expect = 0.38
Identities = 27/102 (26%), Positives = 38/102 (37%), Gaps = 3/102 (2%)
Frame = -2
Query: 405 QLHTHNLVQLHTHNLSSCKQVVQLHTHNLVQLHTHN---LSSCKQVVQLHTHNLVQLHTH 235
Q H H+ Q H+ Q Q H H+ Q H+ +Q Q H H+ + H
Sbjct: 191 QFHDHHQQQQQFHDHHHHHQEQQFHDHHQQQQQFHDHQQQQQQQQQQQFHDHHQQKQQFH 250
Query: 234 NLSSCKQVVQLHTHNLSSCKPLVQLHTHNLSSCKQLVQLHTH 109
+ +Q Q H H + Q H H +Q Q H H
Sbjct: 251 DHHHHQQQQQFHDHQ----QQQQQFHDHQ----QQQHQFHDH 284
Score = 31.6 bits (70), Expect = 0.85
Identities = 25/100 (25%), Positives = 37/100 (37%)
Frame = -2
Query: 405 QLHTHNLVQLHTHNLSSCKQVVQLHTHNLVQLHTHNLSSCKQVVQLHTHNLVQLHTHNLS 226
Q H H+ + H+ +Q Q H H Q H+ + H Q H H
Sbjct: 238 QFHDHHQQKQQFHDHHHHQQQQQFHDHQQQQQQFHDHQQQQHQFHDHPQQKQQFHDHP-- 295
Query: 225 SCKQVVQLHTHNLSSCKPLVQLHTHNLSSCKQLVQLHTHN 106
+Q Q H H+ + Q H H+ +Q Q H H+
Sbjct: 296 --QQQQQFHDHHHQQ-QQKQQFHDHH----QQKQQFHDHH 328
Score = 30.0 bits (66), Expect = 2.5
Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Frame = -2
Query: 381 QLHTHNLSSCKQVVQLHTHNLVQLHTHNLSSCKQVVQLHTHNLVQLHTHN---LSSCKQV 211
Q H H+ +Q Q H H+ Q H+ Q Q H H+ Q H+ +Q
Sbjct: 181 QFHDHH----QQKQQFHDHHQQQQQFHDHHHHHQEQQFHDHHQQQQQFHDHQQQQQQQQQ 236
Query: 210 VQLHTHNLSSCKPLVQLHTHNLSSCKQLVQLHTH 109
Q H H+ + Q H H+ +Q Q H H
Sbjct: 237 QQFHDHH----QQKQQFHDHHHHQQQQ--QFHDH 264
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,594,762
Number of Sequences: 369166
Number of extensions: 1458968
Number of successful extensions: 5521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5240
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)