Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02744
(569 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NSV4|DIAP3_HUMAN Diaphanous protein homolog 3 (Diaphan... 30 4.2
sp|P14002|BGLB_CLOTM Thermostable beta-glucosidase B (Genti... 30 5.5
sp|Q7MIH2|LPXB_VIBVY Lipid-A-disaccharide synthase >gi|3134... 29 7.2
sp|Q87MF0|LPXB_VIBPA Lipid-A-disaccharide synthase 29 7.2
>sp|Q9NSV4|DIAP3_HUMAN Diaphanous protein homolog 3 (Diaphanous-related formin-3) (DRF3)
Length = 1110
Score = 30.0 bits (66), Expect = 4.2
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +1
Query: 88 QEKQAPIIQKTTSEEDSNVLDNLLAALKSG 177
Q+K+ +++ T +++ V+DNLL AL+SG
Sbjct: 1041 QQKKKRLLEMKTEGDETGVMDNLLEALQSG 1070
>sp|P14002|BGLB_CLOTM Thermostable beta-glucosidase B (Gentiobiase) (Cellobiase)
(Beta-D-glucoside glucohydrolase)
Length = 754
Score = 29.6 bits (65), Expect = 5.5
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -1
Query: 305 EAISIKLLDKLNSLNSPRDRDRFIGRRGSLPLGFRLFGPNAPSPLFNAARRLSKTLLSSS 126
E +KL + LN P + DR + G L +G+R + PLF LS T S
Sbjct: 497 ETFPVKLSHNPSYLNFPGEDDRVEYKEG-LFVGYRYYDTKGIEPLFPFGHGLSYTKFEYS 555
Query: 125 DV 120
D+
Sbjct: 556 DI 557
>sp|Q7MIH2|LPXB_VIBVY Lipid-A-disaccharide synthase
sp|Q8DBE8|LPXB_VIBVU Lipid-A-disaccharide synthase
Length = 380
Score = 29.3 bits (64), Expect = 7.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 176 EMEHWVRKDGNLEAKNHVVQ*ID 244
EM HW+RKD + +A N V++ I+
Sbjct: 357 EMHHWIRKDADQQAANAVLKLIE 379
>sp|Q87MF0|LPXB_VIBPA Lipid-A-disaccharide synthase
Length = 379
Score = 29.3 bits (64), Expect = 7.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 176 EMEHWVRKDGNLEAKNHVVQ*ID 244
EM HW+RKD + +A N V++ I+
Sbjct: 356 EMHHWIRKDADQQAANAVLKLIE 378
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,365,264
Number of Sequences: 369166
Number of extensions: 797181
Number of successful extensions: 1575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)