Planaria EST Database


DrC_02744

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02744
         (569 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NSV4|DIAP3_HUMAN  Diaphanous protein homolog 3 (Diaphan...    30   4.2  
sp|P14002|BGLB_CLOTM  Thermostable beta-glucosidase B (Genti...    30   5.5  
sp|Q7MIH2|LPXB_VIBVY  Lipid-A-disaccharide synthase >gi|3134...    29   7.2  
sp|Q87MF0|LPXB_VIBPA  Lipid-A-disaccharide synthase                29   7.2  
>sp|Q9NSV4|DIAP3_HUMAN Diaphanous protein homolog 3 (Diaphanous-related formin-3) (DRF3)
          Length = 1110

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +1

Query: 88   QEKQAPIIQKTTSEEDSNVLDNLLAALKSG 177
            Q+K+  +++  T  +++ V+DNLL AL+SG
Sbjct: 1041 QQKKKRLLEMKTEGDETGVMDNLLEALQSG 1070
>sp|P14002|BGLB_CLOTM Thermostable beta-glucosidase B (Gentiobiase) (Cellobiase)
           (Beta-D-glucoside glucohydrolase)
          Length = 754

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = -1

Query: 305 EAISIKLLDKLNSLNSPRDRDRFIGRRGSLPLGFRLFGPNAPSPLFNAARRLSKTLLSSS 126
           E   +KL    + LN P + DR   + G L +G+R +      PLF     LS T    S
Sbjct: 497 ETFPVKLSHNPSYLNFPGEDDRVEYKEG-LFVGYRYYDTKGIEPLFPFGHGLSYTKFEYS 555

Query: 125 DV 120
           D+
Sbjct: 556 DI 557
>sp|Q7MIH2|LPXB_VIBVY Lipid-A-disaccharide synthase
 sp|Q8DBE8|LPXB_VIBVU Lipid-A-disaccharide synthase
          Length = 380

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 176 EMEHWVRKDGNLEAKNHVVQ*ID 244
           EM HW+RKD + +A N V++ I+
Sbjct: 357 EMHHWIRKDADQQAANAVLKLIE 379
>sp|Q87MF0|LPXB_VIBPA Lipid-A-disaccharide synthase
          Length = 379

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 176 EMEHWVRKDGNLEAKNHVVQ*ID 244
           EM HW+RKD + +A N V++ I+
Sbjct: 356 EMHHWIRKDADQQAANAVLKLIE 378
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,365,264
Number of Sequences: 369166
Number of extensions: 797181
Number of successful extensions: 1575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)