Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02734
(408 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P84103|SFRS3_HUMAN Splicing factor, arginine/serine-rich... 106 2e-23
sp|Q02427|RBP1_DROME RNA-binding protein 1 105 5e-23
sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/ser... 104 8e-23
sp|Q16629|SFRS7_HUMAN Splicing factor, arginine/serine-rich... 102 4e-22
sp|Q8BL97|SFRS7_MOUSE Splicing factor, arginine/serine-rich 7 102 4e-22
sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 pro... 74 9e-14
sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/ser... 74 1e-13
sp|Q24491|RX21_DROME RNA binding protein Rsf1 (RNA binding ... 71 7e-13
sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5... 70 2e-12
sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich... 70 2e-12
>sp|P84103|SFRS3_HUMAN Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor
SRP20)
sp|P84104|SFRS3_MOUSE Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor
SRP20) (X16 protein)
Length = 164
Score = 106 bits (265), Expect = 2e-23
Identities = 51/92 (55%), Positives = 66/92 (71%), Gaps = 6/92 (6%)
Frame = +1
Query: 1 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSV 180
KVYVG+L + N+ E+E+AF +GP++SVWVARNP GFAFV F+D RDA DAV+ELDG
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 181 ICGVRVRVEMSHGRSR------PKPWASQSRN 258
+CG RVRVE+S+G R P W + R+
Sbjct: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRD 102
>sp|Q02427|RBP1_DROME RNA-binding protein 1
Length = 144
Score = 105 bits (261), Expect = 5e-23
Identities = 49/78 (62%), Positives = 61/78 (78%)
Frame = +1
Query: 1 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSV 180
KVYVG+L A++ EIE AF +GP+++VWVARNP GFAFV F+D RDAEDA + LDG+
Sbjct: 12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTR 71
Query: 181 ICGVRVRVEMSHGRSRPK 234
CG R+RVEMS GRSR +
Sbjct: 72 CCGTRIRVEMSSGRSRDR 89
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 (RNA-binding
protein srp-1) (CeSRp20)
Length = 179
Score = 104 bits (259), Expect = 8e-23
Identities = 50/76 (65%), Positives = 58/76 (76%)
Frame = +1
Query: 1 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSV 180
KVYVG LP DA +E+E+ F FG I+ VWVAR P GFAFV +DD RDAEDAV+ LDGS
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 181 ICGVRVRVEMSHGRSR 228
ICGVR RVE+S G+ R
Sbjct: 64 ICGVRARVELSTGQRR 79
>sp|Q16629|SFRS7_HUMAN Splicing factor, arginine/serine-rich 7 (Splicing factor 9G8)
Length = 238
Score = 102 bits (253), Expect = 4e-22
Identities = 48/76 (63%), Positives = 60/76 (78%)
Frame = +1
Query: 1 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSV 180
KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG V
Sbjct: 12 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71
Query: 181 ICGVRVRVEMSHGRSR 228
ICG RVRVE+S G R
Sbjct: 72 ICGSRVRVELSTGMPR 87
>sp|Q8BL97|SFRS7_MOUSE Splicing factor, arginine/serine-rich 7
Length = 267
Score = 102 bits (253), Expect = 4e-22
Identities = 48/76 (63%), Positives = 60/76 (78%)
Frame = +1
Query: 1 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSV 180
KVYVG+L A + E+E+AF +GP+++VW+ARNP GFAFV F+D RDAEDAV+ LDG V
Sbjct: 41 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 100
Query: 181 ICGVRVRVEMSHGRSR 228
ICG RVRVE+S G R
Sbjct: 101 ICGSRVRVELSTGMPR 116
>sp|O22315|SFRS1_ARATH Pre-mRNA splicing factor SF2 (SR1 protein)
Length = 303
Score = 74.3 bits (181), Expect = 9e-14
Identities = 38/77 (49%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Frame = +1
Query: 4 VYVGDLPKDANEKEIEKAFKDFGPIKSV--WVARNPAGFAFVMFDDYRDAEDAVKELDGS 177
VYVG+LP D E+E+E F +GP+ + V P G+AFV FDD RDAEDA+ DG
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 178 VICGVRVRVEMSHGRSR 228
G R+RVE++HG R
Sbjct: 69 DFDGHRLRVELAHGGRR 85
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 (CeSF2)
(CeSF2/ASF)
Length = 258
Score = 73.6 bits (179), Expect = 1e-13
Identities = 41/75 (54%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Frame = +1
Query: 1 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWV--ARNPAGFAFVMFDDYRDAEDAVKELDG 174
KVYVG+LP D EKE+E F +G IK V + R PA FAFV F+D+RDAEDAV+ DG
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPA-FAFVEFEDHRDAEDAVRARDG 68
Query: 175 SVICGVRVRVEMSHG 219
G R+RVE + G
Sbjct: 69 YEFDGRRIRVEFTRG 83
>sp|Q24491|RX21_DROME RNA binding protein Rsf1 (RNA binding protein Rox21)
Length = 197
Score = 71.2 bits (173), Expect = 7e-13
Identities = 35/76 (46%), Positives = 49/76 (64%)
Frame = +1
Query: 1 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSV 180
+VYVG+L + ++E F +G + SVW+A NP GFAFV F+ DAE A L+GS
Sbjct: 8 RVYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSE 67
Query: 181 ICGVRVRVEMSHGRSR 228
+ G ++RVE+S GR R
Sbjct: 68 LLGSQLRVEISKGRPR 83
>sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Insulin-induced growth response protein CL-4)
(Delayed-early protein HRS)
Length = 269
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/76 (46%), Positives = 50/76 (65%)
Frame = +1
Query: 1 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSV 180
+V++G L A EK++E+ FK +G I+ + + R GF FV F+D RDA+DAV ELDG
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
Query: 181 ICGVRVRVEMSHGRSR 228
+C RV +E + RSR
Sbjct: 62 LCSERVTIEHARARSR 77
>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 272
Score = 69.7 bits (169), Expect = 2e-12
Identities = 35/76 (46%), Positives = 50/76 (65%)
Frame = +1
Query: 1 KVYVGDLPKDANEKEIEKAFKDFGPIKSVWVARNPAGFAFVMFDDYRDAEDAVKELDGSV 180
+V++G L A EK++E+ FK +G I+ + + R GF FV F+D RDA+DAV ELDG
Sbjct: 5 RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
Query: 181 ICGVRVRVEMSHGRSR 228
+C RV +E + RSR
Sbjct: 62 LCSERVTIEHARARSR 77
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,270,573
Number of Sequences: 369166
Number of extensions: 630290
Number of successful extensions: 1994
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1916
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)