• TOP
• EST
• Cluster

Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02731
         (830 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QXY7|XK_MOUSE  Membrane transport protein XK (XK-relate...    30   8.2  

>sp|Q9QXY7|XK_MOUSE Membrane transport protein XK (XK-related protein 1) (XK homolog)
          Length = 446

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 24/94 (25%), Positives = 44/94 (46%)
 Frame = +3

Query: 432 DAGVYIGFCFDSNWNLLSVNLGSFI*ESTCLIRS**KFKMIKYSKDEMKMIDIIFLLNFC 611
           +  +  G CF    +LLS+  G+      C I +      IKY + E+K+  + ++   C
Sbjct: 162 EQNITTGRCFIMTLSLLSIVYGAL----RCNILA----IKIKYDEYEVKVKPLAYV---C 210

Query: 612 VTIWVIFEI*IMYKLLLTVLNIFKSCKYCILLVN 713
           + +W  FEI     +L+   ++ K     ++LVN
Sbjct: 211 IFLWRSFEIATRVIVLVLFTSVLKIWVVAVILVN 244

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,050,041
Number of Sequences: 369166
Number of extensions: 1369344
Number of successful extensions: 2791
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2791
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)