Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02728
(846 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P33173|KIF1A_MOUSE Kinesin-like protein KIF1A (Axonal tr... 292 9e-79
sp|Q12756|KIF1A_HUMAN Kinesin-like protein KIF1A (Axonal tr... 292 9e-79
sp|Q60575|KIF1B_MOUSE Kinesin-like protein KIF1B 286 4e-77
sp|O35071|KIF1C_MOUSE Kinesin-like protein KIF1C 284 2e-76
sp|O43896|KIF1C_HUMAN Kinesin-like protein KIF1C 284 2e-76
sp|O60333|KIF1B_HUMAN Kinesin-like protein KIF1B (Klp) 283 3e-76
sp|O35787|KIF1C_RAT Kinesin-like protein KIF1C (Kinesin-lik... 282 7e-76
sp|Q9H1H9|KI13A_HUMAN Kinesin-like protein KIF13A (Kinesin-... 281 1e-75
sp|Q9EQW7|KI13A_MOUSE Kinesin-like protein KIF13A 281 2e-75
sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B (Kinesin-... 278 1e-74
>sp|P33173|KIF1A_MOUSE Kinesin-like protein KIF1A (Axonal transporter of synaptic
vesicles)
Length = 1695
Score = 292 bits (747), Expect = 9e-79
Identities = 160/291 (54%), Positives = 205/291 (70%), Gaps = 13/291 (4%)
Frame = +2
Query: 2 YASQQKVFMELGQGVLDNAIKGYNCSLFAYGQTGSGKSYSMIGFD--NNKGIVPITCREL 175
YASQ++V+ ++G+ +L +A +GYN +FAYGQTG+GKSY+M+G + +GI+P C +L
Sbjct: 67 YASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDL 126
Query: 176 FKIIDAKANESMKYGVQLSMLEIYNERIRDLLVPSSESKGNLAVRESKNLGFFVQDLKKV 355
F I+ N++M Y V++S +EIY ER+RDLL P ++KGNL VRE LG +V+DL K+
Sbjct: 127 FSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP--KNKGNLRVREHPLLGPYVEDLSKL 184
Query: 356 PVGNYEQIEKRMKQGTSNRTIAATQMNATSSRAHTVITIEFNQLVKSGGT--LNAKSSVI 529
V +Y I+ M G RT+AAT MN TSSR+H V I F Q T K S I
Sbjct: 185 AVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKI 244
Query: 530 QLIDLAGSERADSTGATGDRLKEGASINKSLSALGNVIAALADSTSGNNA---------V 682
L+DLAGSERADSTGA G RLKEGA+INKSL+ LG VI+ALA+ SG N +
Sbjct: 245 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFI 304
Query: 683 PYRDSVLTKLLKNALGGNSKTVMIAALSPADINYEETLSTLRYADRVKKIK 835
PYRDSVLT LL+ LGGNS+T M+AALSPADINY+ETLSTLRYADR K+I+
Sbjct: 305 PYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
>sp|Q12756|KIF1A_HUMAN Kinesin-like protein KIF1A (Axonal transporter of synaptic
vesicles)
Length = 1690
Score = 292 bits (747), Expect = 9e-79
Identities = 160/291 (54%), Positives = 205/291 (70%), Gaps = 13/291 (4%)
Frame = +2
Query: 2 YASQQKVFMELGQGVLDNAIKGYNCSLFAYGQTGSGKSYSMIGFD--NNKGIVPITCREL 175
YASQ++V+ ++G+ +L +A +GYN +FAYGQTG+GKSY+M+G + +GI+P C +L
Sbjct: 67 YASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDL 126
Query: 176 FKIIDAKANESMKYGVQLSMLEIYNERIRDLLVPSSESKGNLAVRESKNLGFFVQDLKKV 355
F I+ N++M Y V++S +EIY ER+RDLL P ++KGNL VRE LG +V+DL K+
Sbjct: 127 FSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP--KNKGNLRVREHPLLGPYVEDLSKL 184
Query: 356 PVGNYEQIEKRMKQGTSNRTIAATQMNATSSRAHTVITIEFNQLVKSGGT--LNAKSSVI 529
V +Y I+ M G RT+AAT MN TSSR+H V I F Q T K S I
Sbjct: 185 AVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKI 244
Query: 530 QLIDLAGSERADSTGATGDRLKEGASINKSLSALGNVIAALADSTSGNNA---------V 682
L+DLAGSERADSTGA G RLKEGA+INKSL+ LG VI+ALA+ SG N +
Sbjct: 245 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFI 304
Query: 683 PYRDSVLTKLLKNALGGNSKTVMIAALSPADINYEETLSTLRYADRVKKIK 835
PYRDSVLT LL+ LGGNS+T M+AALSPADINY+ETLSTLRYADR K+I+
Sbjct: 305 PYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 355
>sp|Q60575|KIF1B_MOUSE Kinesin-like protein KIF1B
Length = 1816
Score = 286 bits (733), Expect = 4e-77
Identities = 160/291 (54%), Positives = 203/291 (69%), Gaps = 13/291 (4%)
Frame = +2
Query: 2 YASQQKVFMELGQGVLDNAIKGYNCSLFAYGQTGSGKSYSMIGF--DNNKGIVPITCREL 175
+ASQ +V+ ++G+ +L +A +GYN +FAYGQTG+GKSY+M+G ++ GI+P C EL
Sbjct: 67 FASQNRVYNDIGKEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQEESQAGIIPQLCEEL 126
Query: 176 FKIIDAKANESMKYGVQLSMLEIYNERIRDLLVPSSESKGNLAVRESKNLGFFVQDLKKV 355
F+ I+ NE M Y V++S +EIY ER+RDLL P ++KGNL VRE LG +V+DL K+
Sbjct: 127 FEKINDNCNEEMSYSVEVSYMEIYCERVRDLLNP--KNKGNLRVREHPLLGPYVEDLSKL 184
Query: 356 PVGNYEQIEKRMKQGTSNRTIAATQMNATSSRAHTVITIEFNQLVKSGGT--LNAKSSVI 529
V +Y I M G RT+AAT MN TSSR+H V TI F Q + T K S I
Sbjct: 185 AVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKQDPETNLSTEKVSKI 244
Query: 530 QLIDLAGSERADSTGATGDRLKEGASINKSLSALGNVIAALAD---------STSGNNAV 682
L+DLAGSERADSTGA G RLKEGA+INKSL+ LG VI+ALA+ + +
Sbjct: 245 SLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFI 304
Query: 683 PYRDSVLTKLLKNALGGNSKTVMIAALSPADINYEETLSTLRYADRVKKIK 835
PYRDSVLT LL+ LGGNS+T M+AALSPADINY+ETLSTLRYADR K+IK
Sbjct: 305 PYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIK 355
>sp|O35071|KIF1C_MOUSE Kinesin-like protein KIF1C
Length = 1100
Score = 284 bits (727), Expect = 2e-76
Identities = 160/285 (56%), Positives = 203/285 (71%), Gaps = 7/285 (2%)
Frame = +2
Query: 2 YASQQKVFMELGQGVLDNAIKGYNCSLFAYGQTGSGKSYSMIGFDN--NKGIVPITCREL 175
+ASQQ+V+ ++G+ +L +A +GYN +FAYGQTG+GKSY+M+G +GIVP C +L
Sbjct: 67 FASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGRQEPGQQGIVPQLCEDL 126
Query: 176 FKIIDAKANESMKYGVQLSMLEIYNERIRDLLVPSSESKGNLAVRESKNLGFFVQDLKKV 355
F ++ + + Y V++S +EIY ER+RDLL P +S+G+L VRE LG +VQDL K+
Sbjct: 127 FSRVNVNQSAQLSYSVEVSYMEIYCERVRDLLNP--KSRGSLRVREHPILGPYVQDLSKL 184
Query: 356 PVGNYEQIEKRMKQGTSNRTIAATQMNATSSRAHTVITIEFNQLVKSG--GTLNAKSSVI 529
V +Y I M G RT+AAT MN TSSR+H V TI F Q G + K S I
Sbjct: 185 AVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRSHDQLTGLDSEKVSKI 244
Query: 530 QLIDLAGSERADSTGATGDRLKEGASINKSLSALGNVIAALADSTSG---NNAVPYRDSV 700
L+DLAGSERADS+GA G RLKEGA+INKSL+ LG VI+ALAD S ++ +PYRDSV
Sbjct: 245 SLVDLAGSERADSSGARGMRLKEGANINKSLTTLGKVISALADLQSKKRKSDFIPYRDSV 304
Query: 701 LTKLLKNALGGNSKTVMIAALSPADINYEETLSTLRYADRVKKIK 835
LT LLK LGGNS+T MIAALSPADINYEETLSTLRYADR K+I+
Sbjct: 305 LTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQIR 349
>sp|O43896|KIF1C_HUMAN Kinesin-like protein KIF1C
Length = 1103
Score = 284 bits (727), Expect = 2e-76
Identities = 160/285 (56%), Positives = 202/285 (70%), Gaps = 7/285 (2%)
Frame = +2
Query: 2 YASQQKVFMELGQGVLDNAIKGYNCSLFAYGQTGSGKSYSMIGFDN--NKGIVPITCREL 175
+ASQQ+V+ ++G+ +L +A +GYN +FAYGQTG+GKSY+M+G +GIVP C +L
Sbjct: 67 FASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGRQEPGQQGIVPQLCEDL 126
Query: 176 FKIIDAKANESMKYGVQLSMLEIYNERIRDLLVPSSESKGNLAVRESKNLGFFVQDLKKV 355
F + + + Y V++S +EIY ER+RDLL P +S+G+L VRE LG +VQDL K+
Sbjct: 127 FSRVSENQSAQLSYSVEVSYMEIYCERVRDLLNP--KSRGSLRVREHPILGPYVQDLSKL 184
Query: 356 PVGNYEQIEKRMKQGTSNRTIAATQMNATSSRAHTVITIEFNQLVKSG--GTLNAKSSVI 529
V +Y I M G RT+AAT MN TSSR+H V TI F Q G + K S I
Sbjct: 185 AVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRCHDQLTGLDSEKVSKI 244
Query: 530 QLIDLAGSERADSTGATGDRLKEGASINKSLSALGNVIAALADSTSG---NNAVPYRDSV 700
L+DLAGSERADS+GA G RLKEGA+INKSL+ LG VI+ALAD S ++ +PYRDSV
Sbjct: 245 SLVDLAGSERADSSGARGMRLKEGANINKSLTTLGKVISALADMQSKKRKSDFIPYRDSV 304
Query: 701 LTKLLKNALGGNSKTVMIAALSPADINYEETLSTLRYADRVKKIK 835
LT LLK LGGNS+T MIAALSPADINYEETLSTLRYADR K+I+
Sbjct: 305 LTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQIR 349
>sp|O60333|KIF1B_HUMAN Kinesin-like protein KIF1B (Klp)
Length = 1816
Score = 283 bits (725), Expect = 3e-76
Identities = 159/291 (54%), Positives = 201/291 (69%), Gaps = 13/291 (4%)
Frame = +2
Query: 2 YASQQKVFMELGQGVLDNAIKGYNCSLFAYGQTGSGKSYSMIGF--DNNKGIVPITCREL 175
+ASQ +V+ ++G+ +L +A +GYN +FAYGQTG+GKSY+M+G ++ GI+P C EL
Sbjct: 67 FASQNRVYNDIGKEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGKQEESQAGIIPQLCEEL 126
Query: 176 FKIIDAKANESMKYGVQLSMLEIYNERIRDLLVPSSESKGNLAVRESKNLGFFVQDLKKV 355
F+ I+ NE M Y V++S +EIY ER+RDLL P ++KGNL VRE LG +V+DL K+
Sbjct: 127 FEKINDNCNEEMSYSVEVSYMEIYCERVRDLLNP--KNKGNLRVREHPLLGPYVEDLSKL 184
Query: 356 PVGNYEQIEKRMKQGTSNRTIAATQMNATSSRAHTVITIEFNQLVKSGGT--LNAKSSVI 529
V +Y I M G RT+AAT MN TSSR+H V TI F Q T K S I
Sbjct: 185 AVTSYTDIADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKKHDNETNLSTEKVSKI 244
Query: 530 QLIDLAGSERADSTGATGDRLKEGASINKSLSALGNVIAALAD---------STSGNNAV 682
L+DLAGSERA STGA G RLKEGA+INKSL+ LG VI+ALA+ + +
Sbjct: 245 SLVDLAGSERAASTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFI 304
Query: 683 PYRDSVLTKLLKNALGGNSKTVMIAALSPADINYEETLSTLRYADRVKKIK 835
PYRDSVLT LL+ LGGNS+T M+AALSPADINY+ETLSTLRYADR K+IK
Sbjct: 305 PYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIK 355
>sp|O35787|KIF1C_RAT Kinesin-like protein KIF1C (Kinesin-like protein KIF1D)
Length = 1097
Score = 282 bits (722), Expect = 7e-76
Identities = 159/285 (55%), Positives = 203/285 (71%), Gaps = 7/285 (2%)
Frame = +2
Query: 2 YASQQKVFMELGQGVLDNAIKGYNCSLFAYGQTGSGKSYSMIGFDN--NKGIVPITCREL 175
+ASQQ+V+ ++G+ +L +A +GYN +FAYGQTG+GKSY+M+G +GIVP C +L
Sbjct: 66 FASQQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGRQEPGQQGIVPQLCEDL 125
Query: 176 FKIIDAKANESMKYGVQLSMLEIYNERIRDLLVPSSESKGNLAVRESKNLGFFVQDLKKV 355
F ++ + + Y V++S +EIY ER+RDLL P +S+G+L VRE LG +VQDL K+
Sbjct: 126 FSRVNVNQSAQLSYSVEVSYMEIYCERVRDLLNP--KSRGSLRVREHPILGPYVQDLSKL 183
Query: 356 PVGNYEQIEKRMKQGTSNRTIAATQMNATSSRAHTVITIEFNQLVKSG--GTLNAKSSVI 529
V +Y I M G RT+AAT MN TSSR+H V TI F Q G + K S I
Sbjct: 184 AVTSYADIADLMDCGNKARTVAATNMNETSSRSHAVFTIVFTQRSHDQLTGLDSEKVSKI 243
Query: 530 QLIDLAGSERADSTGATGDRLKEGASINKSLSALGNVIAALADSTSG---NNAVPYRDSV 700
L++LAGSERADS+GA G RLKEGA+INKSL+ LG VI+ALAD S ++ +PYRDSV
Sbjct: 244 SLVNLAGSERADSSGARGMRLKEGANINKSLTTLGKVISALADLQSKKRKSDFIPYRDSV 303
Query: 701 LTKLLKNALGGNSKTVMIAALSPADINYEETLSTLRYADRVKKIK 835
LT LLK LGGNS+T MIAALSPADINYEETLSTLRYADR K+I+
Sbjct: 304 LTWLLKENLGGNSRTAMIAALSPADINYEETLSTLRYADRTKQIR 348
>sp|Q9H1H9|KI13A_HUMAN Kinesin-like protein KIF13A (Kinesin-like protein RBKIN)
Length = 1805
Score = 281 bits (720), Expect = 1e-75
Identities = 154/286 (53%), Positives = 197/286 (68%), Gaps = 5/286 (1%)
Frame = +2
Query: 2 YASQQKVFMELGQGVLDNAIKGYNCSLFAYGQTGSGKSYSMIGFDNNKGIVPITCRELFK 181
YA Q+ VF LG+G+L+ A +GYN +FAYGQTGSGKS+SM+G G++P C LFK
Sbjct: 72 YAGQEVVFKCLGEGILEKAFQGYNACIFAYGQTGSGKSFSMMGHAEQLGLIPRLCCALFK 131
Query: 182 IIDAKANESMKYGVQLSMLEIYNERIRDLLVPSSESKGNLAVRESKNLGFFVQDLKKVPV 361
I + NES + V++S +EIYNE++RDLL P S+ +L VRE K LG +V L ++ V
Sbjct: 132 RISLEQNESQTFKVEVSYMEIYNEKVRDLLDPKG-SRQSLKVREHKVLGPYVDGLSQLAV 190
Query: 362 GNYEQIEKRMKQGTSNRTIAATQMNATSSRAHTVITIEFNQLV--KSGGTLNAKSSVIQL 535
++E IE M +G +RT+AAT MN SSR+H V I Q + G K S + L
Sbjct: 191 TSFEDIESLMSEGNKSRTVAATNMNEESSRSHAVFNIIITQTLYDLQSGNSGEKVSKVSL 250
Query: 536 IDLAGSERADSTGATGDRLKEGASINKSLSALGNVIAALADSTSG---NNAVPYRDSVLT 706
+DLAGSER TGA G+RLKEG++INKSL+ LG VI++LAD +G + VPYRDSVLT
Sbjct: 251 VDLAGSERVSKTGAAGERLKEGSNINKSLTTLGLVISSLADQAAGKGKSKFVPYRDSVLT 310
Query: 707 KLLKNALGGNSKTVMIAALSPADINYEETLSTLRYADRVKKIKNVA 844
LLK+ LGGNS+T MIA +SPA NYEETLSTLRYADR K+I N A
Sbjct: 311 WLLKDNLGGNSQTSMIATISPAADNYEETLSTLRYADRAKRIVNHA 356
>sp|Q9EQW7|KI13A_MOUSE Kinesin-like protein KIF13A
Length = 1749
Score = 281 bits (719), Expect = 2e-75
Identities = 154/286 (53%), Positives = 197/286 (68%), Gaps = 5/286 (1%)
Frame = +2
Query: 2 YASQQKVFMELGQGVLDNAIKGYNCSLFAYGQTGSGKSYSMIGFDNNKGIVPITCRELFK 181
YA Q+ VF LG+G+L+ A +GYN +FAYGQTGSGKS+SM+G G++P C LF+
Sbjct: 72 YAGQEVVFKCLGEGILEKAFQGYNACIFAYGQTGSGKSFSMMGHAEQLGLIPRLCCALFQ 131
Query: 182 IIDAKANESMKYGVQLSMLEIYNERIRDLLVPSSESKGNLAVRESKNLGFFVQDLKKVPV 361
I + NES + V++S +EIYNE++RDLL P S+ +L VRE K LG +V L ++ V
Sbjct: 132 RIALEQNESQTFKVEVSYMEIYNEKVRDLLDPKG-SRQSLKVREHKVLGPYVDGLSQLAV 190
Query: 362 GNYEQIEKRMKQGTSNRTIAATQMNATSSRAHTVITIEFNQLV--KSGGTLNAKSSVIQL 535
++E IE M +G +RT+AAT MN SSR+H V I Q + G K S + L
Sbjct: 191 TSFEDIESLMSEGNKSRTVAATNMNEESSRSHAVFNIIITQTLYDLQSGNSGEKVSKVSL 250
Query: 536 IDLAGSERADSTGATGDRLKEGASINKSLSALGNVIAALADSTSG---NNAVPYRDSVLT 706
+DLAGSER TGA G+RLKEG++INKSL+ LG VI++LAD +G N VPYRDSVLT
Sbjct: 251 VDLAGSERVSKTGAAGERLKEGSNINKSLTTLGLVISSLADQAAGKGKNKFVPYRDSVLT 310
Query: 707 KLLKNALGGNSKTVMIAALSPADINYEETLSTLRYADRVKKIKNVA 844
LLK+ LGGNS+T MIA +SPA NYEETLSTLRYADR K+I N A
Sbjct: 311 WLLKDNLGGNSQTSMIATISPAADNYEETLSTLRYADRAKRIVNHA 356
>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B (Kinesin-like protein GAKIN)
Length = 1826
Score = 278 bits (711), Expect = 1e-74
Identities = 151/286 (52%), Positives = 192/286 (67%), Gaps = 5/286 (1%)
Frame = +2
Query: 2 YASQQKVFMELGQGVLDNAIKGYNCSLFAYGQTGSGKSYSMIGFDNNKGIVPITCRELFK 181
YA Q VF LG+ +L NA GYN +FAYGQTGSGKSY+M+G + G++P C LF+
Sbjct: 73 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFE 132
Query: 182 IIDAKANESMKYGVQLSMLEIYNERIRDLLVPSSESKGNLAVRESKNLGFFVQDLKKVPV 361
+ NE + V++S +EIYNE++RDLL P S+ L VRE LG +V L K+
Sbjct: 133 RTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKG-SRQTLKVREHSVLGPYVDGLSKLAA 191
Query: 362 GNYEQIEKRMKQGTSNRTIAATQMNATSSRAHTVITIEFNQLV--KSGGTLNAKSSVIQL 535
+Y+ IE M +G +RT+AAT MN SSR+H V+ I + GT K + L
Sbjct: 192 TSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVLKITLTHTLYDAKSGTSGEKVGKLSL 251
Query: 536 IDLAGSERADSTGATGDRLKEGASINKSLSALGNVIAALADSTSGNNA---VPYRDSVLT 706
+DLAGSERA TGA GDRLKEG++IN+SL+ LG VI+ALAD ++G N VPYRDSVLT
Sbjct: 252 VDLAGSERATKTGAAGDRLKEGSNINESLTTLGLVISALADQSAGKNKNKFVPYRDSVLT 311
Query: 707 KLLKNALGGNSKTVMIAALSPADINYEETLSTLRYADRVKKIKNVA 844
LLK++LGGNSKT M+A +SPA NY+ETLSTLRYADR K I N A
Sbjct: 312 WLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHIVNNA 357
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,503,728
Number of Sequences: 369166
Number of extensions: 1486540
Number of successful extensions: 5046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4582
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)