Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02726
(902 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24491|RX21_DROME RNA binding protein Rsf1 (RNA binding ... 71 5e-12
sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/ser... 64 4e-10
sp|Q02427|RBP1_DROME RNA-binding protein 1 64 8e-10
sp|Q16629|SFRS7_HUMAN Splicing factor, arginine/serine-rich... 60 6e-09
sp|Q8BL97|SFRS7_MOUSE Splicing factor, arginine/serine-rich 7 60 6e-09
sp|P84103|SFRS3_HUMAN Splicing factor, arginine/serine-rich... 60 8e-09
sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5... 57 5e-08
sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich... 57 5e-08
sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich... 57 5e-08
sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich... 54 8e-07
>sp|Q24491|RX21_DROME RNA binding protein Rsf1 (RNA binding protein Rox21)
Length = 197
Score = 70.9 bits (172), Expect = 5e-12
Identities = 29/68 (42%), Positives = 47/68 (69%)
Frame = +3
Query: 3 IFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVSKMNDRKF 182
+++G L KV K D+E EF ++GK+ VW+A +PPGF+F+ F+H DAE A +N +
Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSEL 68
Query: 183 MGERIKVE 206
+G +++VE
Sbjct: 69 LGSQLRVE 76
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 (RNA-binding
protein srp-1) (CeSRp20)
Length = 179
Score = 64.3 bits (155), Expect = 4e-10
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = +3
Query: 3 IFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVSKMNDRKF 182
+++GGL T ++E F+RFG++ VWVAR PPGF+F+ + DAE AV ++ +
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64
Query: 183 MGERIKVE 206
G R +VE
Sbjct: 65 CGVRARVE 72
>sp|Q02427|RBP1_DROME RNA-binding protein 1
Length = 144
Score = 63.5 bits (153), Expect = 8e-10
Identities = 28/77 (36%), Positives = 48/77 (62%)
Frame = +3
Query: 3 IFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVSKMNDRKF 182
+++G L +K++IE F ++G + +VWVAR+PPGF+F+ F+ DAE A ++ +
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRC 72
Query: 183 MGERIKVEHARNPSNPK 233
G RI+VE + S +
Sbjct: 73 CGTRIRVEMSSGRSRDR 89
>sp|Q16629|SFRS7_HUMAN Splicing factor, arginine/serine-rich 7 (Splicing factor 9G8)
Length = 238
Score = 60.5 bits (145), Expect = 6e-09
Identities = 26/68 (38%), Positives = 43/68 (63%)
Frame = +3
Query: 3 IFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVSKMNDRKF 182
+++G L K ++ER F +G + VW+AR+PPGF+F+ F+ DAE AV ++ +
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 72
Query: 183 MGERIKVE 206
G R++VE
Sbjct: 73 CGSRVRVE 80
>sp|Q8BL97|SFRS7_MOUSE Splicing factor, arginine/serine-rich 7
Length = 267
Score = 60.5 bits (145), Expect = 6e-09
Identities = 26/68 (38%), Positives = 43/68 (63%)
Frame = +3
Query: 3 IFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVSKMNDRKF 182
+++G L K ++ER F +G + VW+AR+PPGF+F+ F+ DAE AV ++ +
Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI 101
Query: 183 MGERIKVE 206
G R++VE
Sbjct: 102 CGSRVRVE 109
>sp|P84103|SFRS3_HUMAN Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor
SRP20)
sp|P84104|SFRS3_MOUSE Splicing factor, arginine/serine-rich 3 (Pre-mRNA splicing factor
SRP20) (X16 protein)
Length = 164
Score = 60.1 bits (144), Expect = 8e-09
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Frame = +3
Query: 3 IFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVSKMNDRKF 182
+++G L K ++ER F +G + VWVAR+PPGF+F+ F+ DA AV +++ R
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL 71
Query: 183 MGERIKVE------HARNPSNPKS 236
G R++VE +RN P S
Sbjct: 72 CGCRVRVELSNGEKRSRNRGPPPS 95
>sp|Q09167|SFRS5_RAT Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Insulin-induced growth response protein CL-4)
(Delayed-early protein HRS)
Length = 269
Score = 57.4 bits (137), Expect = 5e-08
Identities = 27/71 (38%), Positives = 46/71 (64%)
Frame = +3
Query: 3 IFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVSKMNDRKF 182
+FIG LNP + D+ER F+ +G++ D+ + R GF F+ F+ DA+ AV +++ ++
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKEL 62
Query: 183 MGERIKVEHAR 215
ER+ +EHAR
Sbjct: 63 CSERVTIEHAR 73
>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 272
Score = 57.4 bits (137), Expect = 5e-08
Identities = 27/71 (38%), Positives = 46/71 (64%)
Frame = +3
Query: 3 IFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVSKMNDRKF 182
+FIG LNP + D+ER F+ +G++ D+ + R GF F+ F+ DA+ AV +++ ++
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKEL 62
Query: 183 MGERIKVEHAR 215
ER+ +EHAR
Sbjct: 63 CSERVTIEHAR 73
>sp|O35326|SFRS5_MOUSE Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 270
Score = 57.4 bits (137), Expect = 5e-08
Identities = 27/71 (38%), Positives = 46/71 (64%)
Frame = +3
Query: 3 IFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVSKMNDRKF 182
+FIG LNP + D+ER F+ +G++ D+ + R GF F+ F+ DA+ AV +++ ++
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKEL 62
Query: 183 MGERIKVEHAR 215
ER+ +EHAR
Sbjct: 63 CSERVTIEHAR 73
>sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor
SRP55)
Length = 344
Score = 53.5 bits (127), Expect = 8e-07
Identities = 27/73 (36%), Positives = 47/73 (64%)
Frame = +3
Query: 3 IFIGGLNPKVTKYDIEREFERFGKVTDVWVARSPPGFSFLIFKHAGDAEYAVSKMNDRKF 182
++IG L+ V + DI+R F +G++ +V + G+ F+ F+ + DA+ AV ++N ++
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKN---GYGFVEFEDSRDADDAVYELNGKEL 60
Query: 183 MGERIKVEHARNP 221
GER+ VEHAR P
Sbjct: 61 CGERVIVEHARGP 73
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,851,672
Number of Sequences: 369166
Number of extensions: 1572373
Number of successful extensions: 4599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4551
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)