Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02724
(855 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DG99|CCNB2_ORYJA G2/mitotic-specific cyclin-B2 110 4e-24
sp|Q9IBG0|CCNB2_ORYLA G2/mitotic-specific cyclin-B2 104 3e-22
sp|Q9DG96|CCNB2_ORYLU G2/mitotic-specific cyclin-B2 103 8e-22
sp|Q9DGA3|CCNB2_ORYCU G2/mitotic-specific cyclin-B2 101 2e-21
sp|P13351|CCNB2_XENLA G2/mitotic-specific cyclin-B2 94 5e-19
sp|P42524|CCNB_DICDI G2/mitotic-specific cyclin-B 93 8e-19
sp|O93229|CCNB2_RANJA G2/mitotic-specific cyclin-B2 92 2e-18
sp|P30276|CCNB2_MOUSE G2/mitotic-specific cyclin-B2 92 2e-18
sp|O77689|CCNB2_BOVIN G2/mitotic-specific cyclin-B2 92 2e-18
sp|P25010|CCNAL_DAUCA G2/mitotic-specific cyclin C13-1 (A-l... 91 3e-18
>sp|Q9DG99|CCNB2_ORYJA G2/mitotic-specific cyclin-B2
Length = 382
Score = 110 bits (276), Expect = 4e-24
Identities = 65/206 (31%), Positives = 115/206 (55%), Gaps = 4/206 (1%)
Frame = +1
Query: 1 VQLYSK--LSTETLQVAVTLIDMFTSICLVRKSYYQLVGISGLLIACKVVQRFHPRIKDF 174
VQ++S+ L ETL + V ++D F + V + QLVG++ +L+ACK + + P + DF
Sbjct: 159 VQVHSRFQLLQETLYLTVAILDRFLQVHPVSRRKLQLVGVTAMLVACKYEEMYPPEVGDF 218
Query: 175 CYLTEDSYKPYHVIQMERIMLEKLNFFVNVPIPNHFCHRGLLACVEIIDTNLIELFCTFM 354
Y+T+D++ + +++ME+++L L F + P+P HF R ++ + + ++
Sbjct: 219 AYITDDAFTKFQIVEMEQVILRSLGFQLGRPLPLHFLRRASKVADADVEKHTL---AKYL 275
Query: 355 FDLIMLHPASHGIRPSCKSAAAIFMARFILYPEYSPWTKVLQHYTLYRDAQLKDCVMLYM 534
+L +L RPS +AAA+ +++ +L + PW+ QHY+ Y + LK + L
Sbjct: 276 LELTLLDYHMVHYRPSEAAAAALCLSQLLL--DGLPWSLEQQHYSTYDEQHLKPIMQL-- 331
Query: 535 EMMSNVYQ--QSKYSFKAVKEKYSIS 606
M NV Q + + F AVK+KYS S
Sbjct: 332 -MAKNVVQVTEGRTKFLAVKKKYSSS 356
>sp|Q9IBG0|CCNB2_ORYLA G2/mitotic-specific cyclin-B2
Length = 387
Score = 104 bits (260), Expect = 3e-22
Identities = 60/204 (29%), Positives = 113/204 (55%), Gaps = 2/204 (0%)
Frame = +1
Query: 1 VQLYSK--LSTETLQVAVTLIDMFTSICLVRKSYYQLVGISGLLIACKVVQRFHPRIKDF 174
VQ++S+ L ETL + V ++D F + V + QLVG++ +L+ACK + + P + DF
Sbjct: 164 VQVHSRFQLLQETLYLTVAILDRFLQVHPVSRRKLQLVGVTAMLVACKYEEMYAPEVGDF 223
Query: 175 CYLTEDSYKPYHVIQMERIMLEKLNFFVNVPIPNHFCHRGLLACVEIIDTNLIELFCTFM 354
Y+T++++ +++ME+++L L+F + P+P HF R ++ + + ++
Sbjct: 224 AYITDNAFTKSQIVEMEQVILRSLSFQLGRPLPLHFLRRATKVAGADVEKHTL---AKYL 280
Query: 355 FDLIMLHPASHGIRPSCKSAAAIFMARFILYPEYSPWTKVLQHYTLYRDAQLKDCVMLYM 534
+L +L RPS +AAA+ +++ +L + PW+ Q Y+ Y + LK +M +M
Sbjct: 281 MELTLLDYHMVHYRPSEVAAAALCLSQLLL--DGLPWSLTQQQYSTYEEQHLKP-IMQHM 337
Query: 535 EMMSNVYQQSKYSFKAVKEKYSIS 606
+ + + F AVK+KYS S
Sbjct: 338 AKNVVLVNEGRTKFLAVKKKYSSS 361
>sp|Q9DG96|CCNB2_ORYLU G2/mitotic-specific cyclin-B2
Length = 386
Score = 103 bits (256), Expect = 8e-22
Identities = 59/204 (28%), Positives = 113/204 (55%), Gaps = 2/204 (0%)
Frame = +1
Query: 1 VQLYSK--LSTETLQVAVTLIDMFTSICLVRKSYYQLVGISGLLIACKVVQRFHPRIKDF 174
VQ++S+ L ETL + V ++D F + V + QLVG++ +L+ACK + + P + DF
Sbjct: 163 VQVHSRFQLLQETLYLTVAILDRFLQVHPVSRRKLQLVGVTAMLVACKYEEMYTPEVADF 222
Query: 175 CYLTEDSYKPYHVIQMERIMLEKLNFFVNVPIPNHFCHRGLLACVEIIDTNLIELFCTFM 354
Y+T++++ +++ME+++L L+F + P+P HF R ++ + + ++
Sbjct: 223 SYITDNAFTKSQIVEMEQVILRSLSFQLGRPLPLHFLRRATKVAGADVEKHTL---AKYL 279
Query: 355 FDLIMLHPASHGIRPSCKSAAAIFMARFILYPEYSPWTKVLQHYTLYRDAQLKDCVMLYM 534
+L +L RPS +AAA+ +++ +L + PW+ Q Y+ Y + LK +M ++
Sbjct: 280 MELTLLDYHMVHYRPSEVAAAALCLSQLLL--DGLPWSLTQQQYSTYEEQHLKP-IMRHI 336
Query: 535 EMMSNVYQQSKYSFKAVKEKYSIS 606
+ + + F AVK+KYS S
Sbjct: 337 AKNVVLVNEGRTKFLAVKKKYSSS 360
>sp|Q9DGA3|CCNB2_ORYCU G2/mitotic-specific cyclin-B2
Length = 388
Score = 101 bits (252), Expect = 2e-21
Identities = 59/204 (28%), Positives = 113/204 (55%), Gaps = 2/204 (0%)
Frame = +1
Query: 1 VQLYSK--LSTETLQVAVTLIDMFTSICLVRKSYYQLVGISGLLIACKVVQRFHPRIKDF 174
VQ++S+ L ETL + V ++D F + V + QLVG++ +L+ACK + + P + DF
Sbjct: 165 VQVHSRFQLLQETLYLTVAILDPFLQVHPVSRRKLQLVGVTAMLVACKYEKMYAPEVGDF 224
Query: 175 CYLTEDSYKPYHVIQMERIMLEKLNFFVNVPIPNHFCHRGLLACVEIIDTNLIELFCTFM 354
Y+T++++ +++ME+++L L+F + P+P HF R ++ + + ++
Sbjct: 225 SYITDNAFTKSQIVEMEQVILRSLSFQLGRPLPLHFLRRASKVAGADVEKHTL---AKYL 281
Query: 355 FDLIMLHPASHGIRPSCKSAAAIFMARFILYPEYSPWTKVLQHYTLYRDAQLKDCVMLYM 534
+L +L RPS +AAA+ +++ +L + PW+ Q Y+ Y + LK +M ++
Sbjct: 282 MELTLLDYHMVHYRPSEVAAAALCLSQLLL--DGLPWSLTQQQYSTYEEQHLKP-IMQHI 338
Query: 535 EMMSNVYQQSKYSFKAVKEKYSIS 606
+ + + F AVK+KYS S
Sbjct: 339 AKNVVLVNEGRTKFLAVKKKYSSS 362
>sp|P13351|CCNB2_XENLA G2/mitotic-specific cyclin-B2
Length = 392
Score = 94.0 bits (232), Expect = 5e-19
Identities = 62/204 (30%), Positives = 107/204 (52%), Gaps = 2/204 (0%)
Frame = +1
Query: 1 VQLYSK--LSTETLQVAVTLIDMFTSICLVRKSYYQLVGISGLLIACKVVQRFHPRIKDF 174
VQ++S+ L ETL + V ++D F + V +S QLVG++ LLIA K + + P + DF
Sbjct: 171 VQVHSRFQLLQETLYMGVAIMDRFLQVQPVSRSKLQLVGVTSLLIASKYEEMYTPEVADF 230
Query: 175 CYLTEDSYKPYHVIQMERIMLEKLNFFVNVPIPNHFCHRGLLACVEIIDTNLIELFCTFM 354
Y+T+++Y + +ME I+L LNF + P+P HF R +C + + + ++
Sbjct: 231 VYITDNAYTASQIREMEMIILRLLNFDLGRPLPLHFLRRASKSCSADAEQHTL---AKYL 287
Query: 355 FDLIMLHPASHGIRPSCKSAAAIFMARFILYPEYSPWTKVLQHYTLYRDAQLKDCVMLYM 534
+L ++ I+PS +AAA+ +++ IL W +YT Y + L+ +M +M
Sbjct: 288 MELTLIDYEMVHIKPSEIAAAALCLSQKIL--GQGTWGTTQHYYTGYTEGDLQ-LIMKHM 344
Query: 535 EMMSNVYQQSKYSFKAVKEKYSIS 606
Q+ AV+ KY+ S
Sbjct: 345 AKNITKVNQNLTKHVAVRNKYASS 368
>sp|P42524|CCNB_DICDI G2/mitotic-specific cyclin-B
Length = 436
Score = 93.2 bits (230), Expect = 8e-19
Identities = 59/208 (28%), Positives = 107/208 (51%)
Frame = +1
Query: 1 VQLYSKLSTETLQVAVTLIDMFTSICLVRKSYYQLVGISGLLIACKVVQRFHPRIKDFCY 180
V + KL +ET ++V ++D + + ++ + QLVGI+ +L+ACK + + P+IKDF +
Sbjct: 228 VHVRFKLLSETFFLSVNIVDRYLAKVMIPVTKLQLVGITAILLACKYEEIYSPQIKDFVH 287
Query: 181 LTEDSYKPYHVIQMERIMLEKLNFFVNVPIPNHFCHRGLLACVEIIDTNLIELFCTFMFD 360
++D+ VI MER +L L F ++V P HF R A T+ + ++ +
Sbjct: 288 TSDDACTHAEVIDMERQILSTLQFHMSVATPLHFLRRFSKAAGSDSRTHSLS---KYLSE 344
Query: 361 LIMLHPASHGIRPSCKSAAAIFMARFILYPEYSPWTKVLQHYTLYRDAQLKDCVMLYMEM 540
L M+ PS +AA+I++AR + W L++YT Y+++++ C E+
Sbjct: 345 LSMVEYRMVQFVPSMIAAASIYVARRMTMKSGPYWNVTLEYYTCYKESEILQCAQELKEV 404
Query: 541 MSNVYQQSKYSFKAVKEKYSISVKRSIA 624
+ + KA ++KY S +A
Sbjct: 405 RK---RADTSNLKATRKKYLSSKLMEVA 429
>sp|O93229|CCNB2_RANJA G2/mitotic-specific cyclin-B2
Length = 392
Score = 92.0 bits (227), Expect = 2e-18
Identities = 55/208 (26%), Positives = 104/208 (50%)
Frame = +1
Query: 28 ETLQVAVTLIDMFTSICLVRKSYYQLVGISGLLIACKVVQRFHPRIKDFCYLTEDSYKPY 207
ETL + + ++D F + + + QLVG++ LL+A K + + P + DF Y+T+++Y
Sbjct: 180 ETLYMGIAIMDRFLQVQPISRGKLQLVGVTSLLLASKYEEMYSPEVADFAYITDNAYTTS 239
Query: 208 HVIQMERIMLEKLNFFVNVPIPNHFCHRGLLACVEIIDTNLIELFCTFMFDLIMLHPASH 387
+ +ME I+L +L F + P+P HF R AC + + + ++ +L ++
Sbjct: 240 QIREMEMIILRELKFDLGRPLPLHFLRRASKACSADAEQHTL---AKYLMELTLVDYEMV 296
Query: 388 GIRPSCKSAAAIFMARFILYPEYSPWTKVLQHYTLYRDAQLKDCVMLYMEMMSNVYQQSK 567
PS +AAA+ +A+ +L W HYT Y + L + + ++ V Q++
Sbjct: 297 HFHPSEIAAAALCLAQKVL--GVGSWGSTQHHYTGYTEEDLTPIIKHIAKNVTKV-NQNR 353
Query: 568 YSFKAVKEKYSISVKRSIANNETLIDFI 651
AV+ KY+ S I+ + L+ +
Sbjct: 354 TKHVAVRNKYASSKLMKISTHPQLMSLV 381
>sp|P30276|CCNB2_MOUSE G2/mitotic-specific cyclin-B2
Length = 398
Score = 91.7 bits (226), Expect = 2e-18
Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 6/208 (2%)
Frame = +1
Query: 1 VQLYSK--LSTETLQVAVTLIDMFTSICLVRKSYYQLVGISGLLIACKVVQRFHPRIKDF 174
VQ++SK L ETL + + ++D F LV + Q+VGI+ LL+A K + F P I+DF
Sbjct: 174 VQVHSKFRLLQETLYMCIGIMDRFLQAQLVCRKKLQVVGITALLLASKYEEMFSPNIEDF 233
Query: 175 CYLTEDSYKPYHVIQMERIMLEKLNFFVNVPIPNHFCHRGLLACVEIIDTNLIELFCTFM 354
Y+T+++Y + +ME ++L++L F + P+P HF R A ++ + + + +
Sbjct: 234 VYITDNAYTSSQIREMETLILKELKFELGRPLPLHFLRRASKAGEVDVEQHTLAKYLMEL 293
Query: 355 ----FDLIMLHPASHGIRPSCKSAAAIFMARFILYPEYSPWTKVLQHYTLYRDAQLKDCV 522
+D++ HP+ SC S + + W Q+YT Y ++++ + V
Sbjct: 294 TLVDYDMVHYHPSQVAAAASCLSQKVLGQGK---------WNLKQQYYTGYMESEVLE-V 343
Query: 523 MLYMEMMSNVYQQSKYSFKAVKEKYSIS 606
M +M ++ F AVK KY+ S
Sbjct: 344 MQHMAKNVVKVNDNRTKFIAVKNKYASS 371
>sp|O77689|CCNB2_BOVIN G2/mitotic-specific cyclin-B2
Length = 398
Score = 91.7 bits (226), Expect = 2e-18
Identities = 59/208 (28%), Positives = 106/208 (50%), Gaps = 6/208 (2%)
Frame = +1
Query: 1 VQLYSK--LSTETLQVAVTLIDMFTSICLVRKSYYQLVGISGLLIACKVVQRFHPRIKDF 174
VQ++SK L ETL + V ++D + + V + QLVGI+ LL+A K + F P I+DF
Sbjct: 174 VQVHSKFRLLQETLYMCVAVMDRYLQVQPVSRKKLQLVGITALLLASKYEEMFSPNIEDF 233
Query: 175 CYLTEDSYKPYHVIQMERIMLEKLNFFVNVPIPNHFCHRGLLACVEIIDTNLIELFCTFM 354
Y+T+++Y + +ME ++L++L F + P+P HF R A ++ + + + +
Sbjct: 234 VYITDNAYTSSQIREMETLILKELKFELGRPLPLHFLRRASKAGEVDVEQHTLAKYLMEL 293
Query: 355 ----FDLIMLHPASHGIRPSCKSAAAIFMARFILYPEYSPWTKVLQHYTLYRDAQLKDCV 522
+D++ HP+ SC S + + W Q+YT Y ++++ + V
Sbjct: 294 TLVDYDMVHYHPSKVAAAASCLSQKVLGQGK---------WNLKQQYYTGYTESEVLE-V 343
Query: 523 MLYMEMMSNVYQQSKYSFKAVKEKYSIS 606
M +M ++ F A+K KY+ S
Sbjct: 344 MRHMAKNVVRVNENMTKFTAIKNKYASS 371
>sp|P25010|CCNAL_DAUCA G2/mitotic-specific cyclin C13-1 (A-like cyclin)
Length = 341
Score = 91.3 bits (225), Expect = 3e-18
Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 3/202 (1%)
Frame = +1
Query: 1 VQLYSKLSTETLQVAVTLIDMFTSICLVRKSYYQLVGISGLLIACKVVQRFHPRIKDFCY 180
V L KL ETL +A++ +D + S+ ++ + QL+G+S LIA K + + DF
Sbjct: 120 VSLEYKLLPETLYLAISYVDRYLSVNVLNRQKLQLLGVSSFLIASKYEEIKPKNVADFVD 179
Query: 181 LTEDSYKPYHVIQMERIMLEKLNFFVNVPIPNHFCHRGLLACVE---IIDTNLIELFCTF 351
+T+++Y V++ME +L+ L F + P F G + V+ + E +
Sbjct: 180 ITDNTYSQQEVVKMEADLLKTLKFEMGSPTVKTFL--GFIRAVQENPDVPKLKFEFLANY 237
Query: 352 MFDLIMLHPASHGIRPSCKSAAAIFMARFILYPEYSPWTKVLQHYTLYRDAQLKDCVMLY 531
+ +L +L PS +A+ F+ARF + P +PW+ LQ + Y+ LK+CV+L
Sbjct: 238 LAELSLLDYGCLEFVPSLIAASVTFLARFTIRPNVNPWSIALQKCSGYKSKDLKECVLLL 297
Query: 532 MEMMSNVYQQSKYSFKAVKEKY 597
++ + S AV++KY
Sbjct: 298 HDLQMG---RRGGSLSAVRDKY 316
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,232,761
Number of Sequences: 369166
Number of extensions: 1745433
Number of successful extensions: 4746
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4705
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)