Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02719
(909 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60902|EP15R_MOUSE Epidermal growth factor receptor subs... 78 4e-14
sp|Q9UBC2|EP15R_HUMAN Epidermal growth factor receptor subs... 73 1e-12
sp|P42567|EP15_MOUSE Epidermal growth factor receptor subst... 61 4e-09
sp|P42566|EP15_HUMAN Epidermal growth factor receptor subst... 57 5e-08
sp|Q9UKX3|MYH13_HUMAN Myosin-13 (Myosin heavy chain, skelet... 38 0.045
sp|P46865|KINL_LEICH Kinesin-like protein K39 37 0.100
sp|P47029|YJI4_YEAST Hypothetical 117.2 kDa protein in EXO7... 37 0.100
sp|P28023|DYNA_RAT Dynactin-1 (150 kDa dynein-associated po... 37 0.100
sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein 36 0.13
sp|P21613|KINH_LOLPE Kinesin heavy chain 35 0.29
>sp|Q60902|EP15R_MOUSE Epidermal growth factor receptor substrate 15-like 1 (Eps15-related
protein) (Eps15R) (Epidermal growth factor receptor
pathway substrate 15-related sequence) (Eps15-rs)
Length = 907
Score = 77.8 bits (190), Expect = 4e-14
Identities = 78/293 (26%), Positives = 121/293 (41%), Gaps = 69/293 (23%)
Frame = +3
Query: 6 RFQGELNDLMREESSLKDQVQKHHSKLATIEQETSSTEAQIRIAEEKNISLESIKTKLQE 185
R + ELN L +EE+ L+ +Q ++L TI + T+ I A K L+ +
Sbjct: 498 RAKSELNRLQQEETQLEQSIQAGRAQLETILRSLKCTQDDINQARSKLSQLQESHLEAHR 557
Query: 186 VLEEYETFLANPDQMKASNLPFSEVVDD----------------------LLAANGNDFE 299
LE+Y+ PD + ++LP +++ L + N +
Sbjct: 558 SLEQYDQV---PDGVSGTSLPDLATLNEGILLAERGGFGAMDDPFKNKALLFSNNSQELH 614
Query: 300 PSVEKPKPTWISD-----DPFQKD----DPFS----AIVDPFGGN-----DPFLQVNNDP 425
P + + + SD DPF+ D DPFS A DPFGG+ DPF ++D
Sbjct: 615 PDPFQAEDPFKSDPFKGADPFKGDPFQSDPFSEQQTAATDPFGGDPFKESDPFHSSSSDD 674
Query: 426 F----SSQDPFSQDPFSAN-------NGWATANNFSDQNAAF----PIGNVDDLFDNMNS 560
F + DPF+ DPF+ N + + +++ FS + + P G +D + S
Sbjct: 675 FFKKQTKNDPFTSDPFTKNPSLPSKLDPFESSDPFSSSSISSKGSDPFGTLDPFGSSSFS 734
Query: 561 SDKNFG-FKDQNHVDLIDPF-------GFGDSPFDN------LPEKSAPPPRP 677
S + F F + PF GF D PF + LP K PPRP
Sbjct: 735 SAEGFADFSQMSKPPPSGPFSSSLGGTGFSDDPFKSKQDTPALPPKKPAPPRP 787
Score = 69.7 bits (169), Expect = 1e-11
Identities = 73/267 (27%), Positives = 107/267 (40%), Gaps = 54/267 (20%)
Frame = +3
Query: 246 PFSEVVDDLLAANGNDFEPSVEKPKPTWISDDPFQKDDPFSAIVDPFGGNDPFLQVN--- 416
PF E D +++ +DF K P + DPF K+ + +DPF +DPF +
Sbjct: 660 PFKES-DPFHSSSSDDFFKKQTKNDP--FTSDPFTKNPSLPSKLDPFESSDPFSSSSISS 716
Query: 417 --NDPFSSQDPFSQDPFSANNGWATANNFSDQNAAFPI-------GNVDDLFDN------ 551
+DPF + DPF FS+ G+A + S + P G DD F +
Sbjct: 717 KGSDPFGTLDPFGSSSFSSAEGFADFSQMSKPPPSGPFSSSLGGTGFSDDPFKSKQDTPA 776
Query: 552 -----------------------MNSSD------------KNFGFKDQNHVDLIDPFGFG 626
+ SSD + G QN DPF G
Sbjct: 777 LPPKKPAPPRPKPPSGQSTPVSQLGSSDFPESPDPFQPLGADSGEPFQNKKGFGDPFS-G 835
Query: 627 DSPFDNLPEKSAPPPRPTKAPQXXXXXXXXXXXXXXXXIYRTVLSESDQLSWAKLESER- 803
PF P SA PP+ + + + + +E QL+WAK ESE+
Sbjct: 836 KDPF--APSSSAKPPKASSS---------------GFADFTSFGNEEQQLAWAKRESEKA 878
Query: 804 EAKEAEDVRKREQADLELALKLSQADI 884
E + +R++EQ DLELA+ LS+AD+
Sbjct: 879 EQERLARLRRQEQEDLELAIALSKADM 905
>sp|Q9UBC2|EP15R_HUMAN Epidermal growth factor receptor substrate 15-like 1 (Eps15-related
protein) (Eps15R)
Length = 864
Score = 73.2 bits (178), Expect = 1e-12
Identities = 81/297 (27%), Positives = 111/297 (37%), Gaps = 73/297 (24%)
Frame = +3
Query: 6 RFQGELNDLMREESSLKDQVQKHHSKLATIEQETSSTEAQIRIAEEKNISLESIKTKLQE 185
R + ELN L +EE+ L+ +Q +L TI + ST+ +I A K L + +
Sbjct: 500 RAKSELNRLQQEETQLEQSIQAGRVQLETIIKSLKSTQDEINQARSKLSQLHESRQEAHR 559
Query: 186 VLEEYETFLANPDQMKASNLP-FSEVV-----------DDLLAANGNDFEPSVEKPKPTW 329
LE+Y+ L ++L SE V DD F + ++ P
Sbjct: 560 SLEQYDQVLDGAHGASLTDLANLSEGVSLAERGSFGAMDDPFKNKALLFSNNTQELHP-- 617
Query: 330 ISDDPFQKDDPFSAIVDPFGGNDPFL--QVNNDPFSSQ-----DPFSQDPFSANN---GW 479
DPFQ +DPF + DPF G DPF NDPF+ Q DPF DPF ++ G
Sbjct: 618 ---DPFQTEDPFKS--DPFKGADPFKGDPFQNDPFAEQQTTSTDPFGGDPFKESDPFRGS 672
Query: 480 ATANNFSDQNAAFPIGN--------VDDLFDNMNSSD----KNFGFKDQNHVDLIDPFG- 620
AT + F Q P + + D SSD + K + +DPFG
Sbjct: 673 ATDDFFKKQTKNDPFTSDPFTKNPSLPSKLDPFESSDPFSSSSVSSKGSDPFGTLDPFGS 732
Query: 621 --------------------------------FGDSPFDN------LPEKSAPPPRP 677
F D PF + LP K PPRP
Sbjct: 733 GSFNSAEGFADFSQMSKPPPSGPFTSSLGGAGFSDDPFKSKQDTPALPPKKPAPPRP 789
Score = 59.3 bits (142), Expect = 1e-08
Identities = 72/277 (25%), Positives = 107/277 (38%), Gaps = 68/277 (24%)
Frame = +3
Query: 45 SSLKDQVQKHHSKLATIEQETSSTEAQI-RIAEEK----------NISLESIKTKLQEVL 191
SSLK Q+Q S L + E + + ++++ R+ +E+ + LE+I L+
Sbjct: 478 SSLKTQIQSQESDLKSQEDDLNRAKSELNRLQQEETQLEQSIQAGRVQLETIIKSLKSTQ 537
Query: 192 EEYETFLANPDQMKASNL-------PFSEVVDDLLAANGNDFEPSVE------------- 311
+E + Q+ S + +V+D A+ D E
Sbjct: 538 DEINQARSKLSQLHESRQEAHRSLEQYDQVLDGAHGASLTDLANLSEGVSLAERGSFGAM 597
Query: 312 ----KPKPTWISD-------DPFQKDDPFSAIVDPFGGNDPFL--QVNNDPFSSQ----- 437
K K S+ DPFQ +DPF + DPF G DPF NDPF+ Q
Sbjct: 598 DDPFKNKALLFSNNTQELHPDPFQTEDPFKS--DPFKGADPFKGDPFQNDPFAEQQTTST 655
Query: 438 DPFSQDPFSANN---GWATANNFSDQNAAFPI--------GNVDDLFDNMNSSD----KN 572
DPF DPF ++ G AT + F Q P ++ D SSD +
Sbjct: 656 DPFGGDPFKESDPFRGSATDDFFKKQTKNDPFTSDPFTKNPSLPSKLDPFESSDPFSSSS 715
Query: 573 FGFKDQNHVDLIDPFGFGD----SPFDNLPEKSAPPP 671
K + +DPFG G F + + S PPP
Sbjct: 716 VSSKGSDPFGTLDPFGSGSFNSAEGFADFSQMSKPPP 752
>sp|P42567|EP15_MOUSE Epidermal growth factor receptor substrate 15 (Protein Eps15) (AF-1p
protein)
Length = 897
Score = 61.2 bits (147), Expect = 4e-09
Identities = 90/368 (24%), Positives = 131/368 (35%), Gaps = 88/368 (23%)
Frame = +3
Query: 45 SSLKDQVQKHHSKLATIEQETSSTEAQIRIAEEKNISLESIKTKLQEVL---EEYETFLA 215
SS +H +E E + E+ +R + E I+ + + + V E T
Sbjct: 532 SSETANFNEHAEGQNNLESEPTHQESSVRSSPE--IAPSDVTDESEAVTVAGNEKVTPRF 589
Query: 216 NPDQMKASNLPF---SEVVDDLLAANGNDFEPSVEKPKPTWISDDPFQKDDPFSAIVDPF 386
+ D+ PF S + D +A DF S DDPF K DPF DPF
Sbjct: 590 DDDKHSKEEDPFNVESSSLTDAVADTNLDFFQSDPFVGSDPFKDDPFGKIDPFGG--DPF 647
Query: 387 GGNDPFL------QVNNDPF--SSQDPFS---------------QDPF------------ 461
G+DPF Q + DPF SS DPFS DPF
Sbjct: 648 KGSDPFASDCFFKQTSTDPFTTSSTDPFSASSNSSNTSVETWKHNDPFAPGGTVVAAASD 707
Query: 462 SANNGWATA-------NNFSDQNAAFPIGNVDDLFDNMNSSDKNF--------------- 575
SA + +A+ + F+D + + N D ++SS +
Sbjct: 708 SATDPFASVFGNESFGDGFADFSTLSKVNNEDAFNPTISSSTSSVTIAKPMLEETASKSE 767
Query: 576 ---------------------GFKDQNHVDLIDPFGFGDSPFDNLPEKSAPPPRPTKA-- 686
G + N +D DP D PF P +P +
Sbjct: 768 DVPPALPPKVGTPTRPCPPPPGKRPINKLDSSDPLKLND-PFQPFPGNDSPKEKDPDMFC 826
Query: 687 -PQXXXXXXXXXXXXXXXXIYRTVLSESDQLSWAKLESEREAKE-AEDVRKREQADLELA 860
P + SE D + WAK ESERE ++ + ++EQ DLELA
Sbjct: 827 DPFTSSTTTNKEADPSNFANFSAYPSEEDMIEWAKRESEREEEQRLARLNQQEQEDLELA 886
Query: 861 LKLSQADI 884
+ LS+++I
Sbjct: 887 IALSKSEI 894
Score = 43.5 bits (101), Expect = 8e-04
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 29/232 (12%)
Frame = +3
Query: 12 QGELNDLMREESSLKDQVQKHHSKLATIEQETSSTEAQIRI---AEEKNISLESIKT-KL 179
Q L + +E SS++ +++ + + SS+ + + + ++S S +T
Sbjct: 479 QQHLQESQQEISSMQMRLEMKDLETDNNQSNWSSSPQSVLVNGATDYCSLSTSSSETANF 538
Query: 180 QEVLEEYETFLANPDQMKAS-----NLPFSEVVDDLLAAN--GNDFEPSVEKPKPTWISD 338
E E + P ++S + S+V D+ A GN EK P + D
Sbjct: 539 NEHAEGQNNLESEPTHQESSVRSSPEIAPSDVTDESEAVTVAGN------EKVTPRFDDD 592
Query: 339 DPFQKDDPFS--------AIVD---------PFGGNDPFLQVNNDPFSSQDPFSQDPFSA 467
+++DPF+ A+ D PF G+DPF +DPF DPF DPF
Sbjct: 593 KHSKEEDPFNVESSSLTDAVADTNLDFFQSDPFVGSDPF---KDDPFGKIDPFGGDPFKG 649
Query: 468 NNGWATANNFSDQNA-AFPIGNVDDLFDNMNSSDKNFGFKDQNHVDLIDPFG 620
++ +A+ F + F + D + NSS N + H D P G
Sbjct: 650 SDPFASDCFFKQTSTDPFTTSSTDPFSASSNSS--NTSVETWKHNDPFAPGG 699
>sp|P42566|EP15_HUMAN Epidermal growth factor receptor substrate 15 (Protein Eps15) (AF-1p
protein)
Length = 896
Score = 57.4 bits (137), Expect = 5e-08
Identities = 71/267 (26%), Positives = 96/267 (35%), Gaps = 84/267 (31%)
Frame = +3
Query: 336 DDPFQKDDPFSAIVDPFGGNDP-----FLQVNNDPF--SSQDPFS--------------- 449
DDPF K DPF DPF G+DP F + + DPF SS DPFS
Sbjct: 633 DDPFGKIDPFGG--DPFKGSDPFASDCFFRQSTDPFATSSTDPFSAANNSSITSVETLKH 690
Query: 450 QDPF-----------SANNGWAT-------ANNFSDQNAAFPIGNVDDLFDNMNSSDKNF 575
DPF SA + +A+ F+D + + N D +SS N
Sbjct: 691 NDPFAPGGTVVAASDSATDPFASVFGNESFGGGFADFSTLSKVNNEDPFRSATSSSVSNV 750
Query: 576 ------------------------------------GFKDQNHVDLIDPFGFGDSPFDNL 647
G + N +D DPF D PF
Sbjct: 751 VITKNVFEETSVKSEDEPPALPPKIGTPTRPCPLPPGKRSINKLDSPDPFKLND-PFQPF 809
Query: 648 PEKSAPPPRPTKAPQXXXXXXXXXXXXXXXXI-------YRTVLSESDQLSWAKLESERE 806
P +P K P+ + SE D + WAK ESERE
Sbjct: 810 PGNDSP---KEKDPEIFCDPFTSATTTTNKEADPSNFANFSAYPSEEDMIEWAKRESERE 866
Query: 807 AKE-AEDVRKREQADLELALKLSQADI 884
++ + ++EQ DLELA+ LS+++I
Sbjct: 867 EEQRLARLNQQEQEDLELAIALSKSEI 893
Score = 42.0 bits (97), Expect = 0.002
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +3
Query: 378 DPFGGNDPFLQVNNDPFSSQDPFSQDPFSANNGWATANNFSDQNAAFPIGNVDDLFDNMN 557
DPF G+DPF +DPF DPF DPF ++ +A+ F F + D N
Sbjct: 623 DPFVGSDPF---KDDPFGKIDPFGGDPFKGSDPFASDCFFRQSTDPFATSSTDPFSAANN 679
Query: 558 SS 563
SS
Sbjct: 680 SS 681
Score = 32.3 bits (72), Expect = 1.9
Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 38/186 (20%)
Frame = +3
Query: 18 ELNDLMREESSLKDQVQKHHSKLATIEQETSSTEAQIRIAEEKNISLESIKTKLQEV--- 188
EL+ L +E + L++ V+ ++L ++Q ++ +I + K + ++ ++ ++
Sbjct: 453 ELSRLQQETAELEESVESGKAQLEPLQQHLQDSQQEISSMQMKLMEMKDLENHNSQLNWC 512
Query: 189 ------------------LEEYETFLANPDQMKASNLPFSEVVDDLLAANGNDFEPS--- 305
ET N SNL + + A + + PS
Sbjct: 513 SSPHSILVNGATDYCSLSTSSSETANLNEHVEGQSNLESEPIHQESPARSSPELLPSGVT 572
Query: 306 ---------VEKPKPTWISDDPFQKDDPFSAIVDPFGGNDPFLQVN-----NDPFSSQDP 443
EK ++ +++DPF+ VD P N +DPF DP
Sbjct: 573 DENEVTTAVTEKVCSELDNNRHSKEEDPFN--VDSSSLTGPVADTNLDFFQSDPFVGSDP 630
Query: 444 FSQDPF 461
F DPF
Sbjct: 631 FKDDPF 636
Score = 30.8 bits (68), Expect = 5.5
Identities = 22/60 (36%), Positives = 30/60 (50%)
Frame = +3
Query: 333 SDDPFQKDDPFSAIVDPFGGNDPFLQVNNDPFSSQDPFSQDPFSANNGWATANNFSDQNA 512
S DPF+ +DPF PF GND DP DPF+ + N A +NF++ +A
Sbjct: 796 SPDPFKLNDPF----QPFPGNDS--PKEKDPEIFCDPFTSATTTTNKE-ADPSNFANFSA 848
>sp|Q9UKX3|MYH13_HUMAN Myosin-13 (Myosin heavy chain, skeletal muscle, extraocular)
(MyHC-eo)
Length = 1938
Score = 37.7 bits (86), Expect = 0.045
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 10/116 (8%)
Frame = +3
Query: 3 KRFQGELNDLMRE------ESSLKDQVQKHHSK-LATIEQETSSTEAQIRIAEEKNISLE 161
+R QGE+ DLMR+ + D+ Q++ K LA +Q+ ++A++ A++++
Sbjct: 1423 QRLQGEVEDLMRDLERSHTACATLDKKQRNFDKVLAEWKQKLDESQAELEAAQKES---R 1479
Query: 162 SIKTKLQEVLEEYETFLANPDQMKASNLPFSEVVDDL---LAANGNDFEPSVEKPK 320
S+ T+L ++ YE + + ++ N E + DL +A G + + EK K
Sbjct: 1480 SLSTELFKMRNAYEEVVDQLETLRRENKNLQEEISDLTEQIAETGKNLQ-EAEKTK 1534
>sp|P46865|KINL_LEICH Kinesin-like protein K39
Length = 955
Score = 36.6 bits (83), Expect = 0.100
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 11/94 (11%)
Frame = +3
Query: 21 LNDLMREESSLKDQVQKHHSKLATIEQETSSTEAQI-RIAEEKNISLESIKT---KLQEV 188
L ++ +++++L ++ +++A+ ++ ST AQ+ R E+ ++L++++T KLQE
Sbjct: 517 LKEMAKKDAALSKVRRRKDAEIASEREKLESTVAQLEREQREREVALDALQTHQRKLQEA 576
Query: 189 LEEYETFLANPDQ-------MKASNLPFSEVVDD 269
LE E A DQ +++ S+VV D
Sbjct: 577 LESSERTAAERDQLLQQLTELQSERTQLSQVVTD 610
>sp|P47029|YJI4_YEAST Hypothetical 117.2 kDa protein in EXO70-ARP4 intergenic region
Length = 1046
Score = 36.6 bits (83), Expect = 0.100
Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 4/160 (2%)
Frame = +3
Query: 51 LKDQVQKHH-SKLATIEQETSSTEAQIRIA-EEKNISLESIKTKLQEVLEEYETFL--AN 218
++D+++ H ++L TSST A R + + I++ K ++ +L + ET N
Sbjct: 862 IEDELKNHDKNELNRHSTNTSSTPASARSSFDYSGINISKDKLNMEPLLSKTETLTNKVN 921
Query: 219 PDQMKASNLPFSEVVDDLLAANGNDFEPSVEKPKPTWISDDPFQKDDPFSAIVDPFGGND 398
D N + ++++ + D + W P Q D+ + G N+
Sbjct: 922 EDSFLRPNDSYVDLLEPSVDTT-IDITAPYARNSSAW---HPLQNDNDNNQFSPLLGSNE 977
Query: 399 PFLQVNNDPFSSQDPFSQDPFSANNGWATANNFSDQNAAF 518
FL N S++ + D F+ +G ++ SD F
Sbjct: 978 NFLNAANAQNSAESDHNNDIFTQGSGLTESSKNSDSEERF 1017
>sp|P28023|DYNA_RAT Dynactin-1 (150 kDa dynein-associated polypeptide) (DP-150)
(DAP-150) (p150-glued)
Length = 1280
Score = 36.6 bits (83), Expect = 0.100
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 36 REESSLKDQVQKHHSKLATIEQETSSTEAQIRIAEEKNISLESI---KTKLQEVLEEYET 206
+EE L+DQV+ KL T+ + S +A+++ E+ I LE + K+K+QE + +
Sbjct: 215 KEEEGLRDQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQR 274
Query: 207 FLANPDQMK 233
L + K
Sbjct: 275 RLKEAKEAK 283
>sp|Q99816|TS101_HUMAN Tumor susceptibility gene 101 protein
Length = 390
Score = 36.2 bits (82), Expect = 0.13
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = +3
Query: 6 RFQGELNDLMREESSLKDQVQKHHSKLATIEQETSSTEAQIRIAEEKNISLESIKTKLQE 185
R Q ELN L R E LK QK + ++QE + + I + ++K+ L S K++
Sbjct: 248 RAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSALEKMEN 307
Query: 186 VLE 194
E
Sbjct: 308 QSE 310
>sp|P21613|KINH_LOLPE Kinesin heavy chain
Length = 967
Score = 35.0 bits (79), Expect = 0.29
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = +3
Query: 3 KRFQGELNDLMREESSLKDQVQKHHSKLATIEQETS-STEAQIRIAEEKNISLESIKTKL 179
+ + ++ L E + LK Q Q H + L+ E+ETS ++E + + ++ + E + +L
Sbjct: 655 RMLEDNVDSLNEEYAKLKAQEQMHLAALSEREKETSQASETREVLEKQMEMHREQHQKQL 714
Query: 180 QEVLEEYETFLANPDQMKASNLPFSEVVDDLLAANGNDFEPSVEK 314
Q + +E A D +K N S ++ L A + VEK
Sbjct: 715 QSLRDEISEKQATVDNLKDDNQRLSLALEKLQADYDKLKQEEVEK 759
Score = 32.0 bits (71), Expect = 2.5
Identities = 19/91 (20%), Positives = 46/91 (50%)
Frame = +3
Query: 3 KRFQGELNDLMREESSLKDQVQKHHSKLATIEQETSSTEAQIRIAEEKNISLESIKTKLQ 182
+ Q +++ + + S KD+V++ L +E+ + + + + E+KN E++ +L
Sbjct: 462 ENLQQDMSRIQADNESAKDEVKE---VLQALEELAMNYDQKSQEVEDKNKENENLSEELN 518
Query: 183 EVLEEYETFLANPDQMKASNLPFSEVVDDLL 275
+ L + DQ+K S++ + V D++
Sbjct: 519 QKLSTLNSLQNELDQLKDSSMHHRKRVTDMM 549
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,342,025
Number of Sequences: 369166
Number of extensions: 2116312
Number of successful extensions: 8158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8106
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)