Planaria EST Database


DrC_02717

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02717
         (877 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P25386|USO1_YEAST  Intracellular protein transport protei...    49   2e-05
sp|Q8T5T1|MDN1_GIALA  Midasin (MIDAS-containing protein)           44   6e-04
sp|Q10411|SPO15_SCHPO  Sporulation-specific protein 15             42   0.002
sp|P34127|MYBH_DICDI  Myb-like protein                             42   0.002
sp|Q01550|TANA_XENLA  Tanabin                                      42   0.003
sp|Q9SL02|RAD50_ARATH  DNA repair protein RAD50 (AtRAD50)          41   0.005
sp|P47170|YJ9G_YEAST  Hypothetical 182.0 kDa protein in NMD5...    39   0.025
sp|P36358|VS10_ROTPC  Minor outer capsid protein (NS26)            38   0.042
sp|Q9P7S5|UBP7_SCHPO  Probable ubiquitin carboxyl-terminal h...    38   0.042
sp|P02565|MYH3_CHICK  Myosin heavy chain, fast skeletal musc...    38   0.042
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
          Length = 1790

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 1/201 (0%)
 Frame = +2

Query: 20   EIMEDEANSDSEKDLCTP-KENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEEKTS 196
            E++E ++   S  +L     E    L  NYK D   ENE +IKA           E K  
Sbjct: 942  ELVEYKSRFQSHDNLVAKLTEKLKSLANNYK-DMQAENESLIKAV---------EESKNE 991

Query: 197  DWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSNGMNHTTEDYIESNSESE 376
              +       ++  +   +  F  +   +  N  ++++++S   +  T E+ I  +  S+
Sbjct: 992  SSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISD--LEQTKEEIISKSDSSK 1049

Query: 377  MTGSNIATCIDDLIQTGEMWTNEKEQLLSEDDDFRNEALRHLYMREELISIKNDLKTRLS 556
                +  + + + ++T     +E    +SE    R E    L   + L   KN+L+T+L 
Sbjct: 1050 DEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNL---KNELETKLE 1106

Query: 557  SEANEIARLKRNIESLEEEKL 619
            +    +  +K N E L+EEK+
Sbjct: 1107 TSEKALKEVKENEEHLKEEKI 1127
>sp|Q8T5T1|MDN1_GIALA Midasin (MIDAS-containing protein)
          Length = 4835

 Score = 43.9 bits (102), Expect = 6e-04
 Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 16/211 (7%)
 Frame = +2

Query: 32   DEANSDSEKDLCTPKENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEEKTS-DWLM 208
            D+ N   + DL  P   E+D      N+++ E +  +     PD+   + EE    D   
Sbjct: 4211 DDKNLSGQSDLSVP---EADGEDETVNEELEEEQQQMSDLSNPDQDACAIEEDDDRDLPS 4267

Query: 209  SDEQPQEVTHVIVTESQFHSDDNHL-----TVNSVEIEQSVSSNGMNHTTEDYIESNSES 373
            SDE  +E       E+    DDN       T N  + + +++ +     T D  E   ++
Sbjct: 4268 SDENAEEHDE---HEAPVDIDDNEASDEQSTYNDNDRDDAINISAQQQATNDEEEMQKDT 4324

Query: 374  EMTGSNIATCIDDLIQTGEMWTNEKEQLLSEDDDFRNEALRHLYMRE----------ELI 523
            E    NI     D  + G   TN+++Q   ++D FR E +   +  E          E  
Sbjct: 4325 EYDQENITDSNPDANEVG---TNDQKQTHEDNDQFRQENIEDQWEAESTENSQGEGAESA 4381

Query: 524  SIKNDLKTRLSSEANEIARLKRNIESLEEEK 616
             +K         E   I + + NI   E EK
Sbjct: 4382 DLKEGNPDMSLEEFQRIWKERLNIHDRESEK 4412
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15
          Length = 1957

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 10/231 (4%)
 Frame = +2

Query: 2    LPRDTPEIMEDEANSDSEKDLCTPKENE-----SDLNQNYKNDKMNENEIIIKATVIPDE 166
            L +++ ++     + ++EK L   +  E       L    K ++   +++  K T   +E
Sbjct: 897  LEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEE 956

Query: 167  IVKSSEEKTSDWLMSDEQPQEVTHVIVTESQFHSDDNHL--TVNSVEIEQSVSSNGMNHT 340
            I    EE  S          ++   +   S+  +D  HL   V+ VE+E++ +    N  
Sbjct: 957  ISNLKEENMSQSQAITSVKSKLDETLSKSSKLEADIEHLKNKVSEVEVERN-ALLASNER 1015

Query: 341  TEDYIESNSESEMTGSNIATCIDDLIQTGEMWTNEKEQLLSEDDDFRNEALRHLYMREEL 520
              D +++N      G NIA+     +QT      E E+  +E+DD +++        E L
Sbjct: 1016 LMDDLKNN------GENIAS-----LQT------EIEKKRAENDDLQSKLSVVSSEYENL 1058

Query: 521  ISIKNDLKTRLSSEANEIARLKRNIESLEEEKLLKTFSVQ---NQYRKLNE 664
            + I +     L  + N++  +++N++ L +EK  +   ++   ++Y KL E
Sbjct: 1059 LLISSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQRNVELEELTSKYGKLGE 1109

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 7/166 (4%)
 Frame = +2

Query: 182  EEKTSDWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSNGMNHTTEDYIES 361
            + +  DWL+     ++      +E  F   +  +T N   +E+     G   T ++  E 
Sbjct: 1329 QHEHDDWLIQRGDLEKALKD--SEKNFLRKEAEMTENIHSLEE-----GKEETKKEIAEL 1381

Query: 362  NS---ESEMTGSNIATCIDDL---IQTGEMWTNEKEQLL-SEDDDFRNEALRHLYMREEL 520
            +S   ++++  + +   +D L   I+  E    EKE L+ S ++   N+  +       L
Sbjct: 1382 SSRLEDNQLATNKLKNQLDHLNQEIRLKEDVLKEKESLIISLEESLSNQRQKE----SSL 1437

Query: 521  ISIKNDLKTRLSSEANEIARLKRNIESLEEEKLLKTFSVQNQYRKL 658
            +  KN+L+  L   + + + L   IES+      K+F + +   KL
Sbjct: 1438 LDAKNELEHMLDDTSRKNSSLMEKIESINSSLDDKSFELASAVEKL 1483

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 47/231 (20%), Positives = 96/231 (41%), Gaps = 29/231 (12%)
 Frame = +2

Query: 8   RDTPEIMEDEANSDSEK-DLCTPKENESDLNQNYKNDKMNENEIII-KATVIPDEIVKSS 181
           R T   +  E  +  EK + C   E +S L +  K++  N ++ I+ K  +I D   + S
Sbjct: 270 RQTENSLRAECKTLQEKLEKCAINEEDSKLLEELKHNVANYSDAIVHKDKLIEDLSTRIS 329

Query: 182 E------EKTSDWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSNGMNHTT 343
           E      E+ +  + +++  + + + I +     + ++ L    VE+++S   N   H+ 
Sbjct: 330 EFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKES---NRTIHSQ 386

Query: 344 EDYIESNSES-EMTGSNIATCIDD----LIQTGEMWTNEKEQL----------------L 460
               ES   S E    ++   ID+    L    +M      QL                +
Sbjct: 387 LTDAESKLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAEI 446

Query: 461 SEDDDFRNEALRHLYMREELISIKNDLKTRLSSEANEIARLKRNIESLEEE 613
           + + DF+N+ ++      +   I+ DL+  L+S +NE+      I+  ++E
Sbjct: 447 NSERDFQNKKIK------DFEKIEQDLRACLNSSSNELKEKSALIDKKDQE 491
>sp|P34127|MYBH_DICDI Myb-like protein
          Length = 451

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 33/163 (20%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
 Frame = +2

Query: 23  IMEDEANSDSEKDLCTPKENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEEKTSDW 202
           ++ + AN+ +  +     +NE+D NQN  N+  N N               ++EE+  + 
Sbjct: 22  VILNAANNTNSDNSSNNSDNENDDNQNNNNNNNNNNN-------------NNNEEEEEED 68

Query: 203 LMSDEQPQEVTHVI-----VTESQFHSDD---NHLTVNSVEIEQSVSSNGMNHTTEDYIE 358
              D+  Q+  H I     + ++  ++++   N++  N   +  ++++N  N+   + I 
Sbjct: 69  DDDDDDSQQNRHNISIPFTINKNSINNNNNLINNINNNINNMNNNMNNNNNNNNMNNNIN 128

Query: 359 SNSESEMTGSNIATCIDDLIQTGEMWTNEKEQLLSEDDDFRNE 487
           +N  S ++ +N  T   +  +T   WT+E++Q+L +  +  N+
Sbjct: 129 NNGNSNISNNN--TPKVEKKKTKGKWTSEEDQILIKAVNLHNQ 169
>sp|Q01550|TANA_XENLA Tanabin
          Length = 1744

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 5/205 (2%)
 Frame = +2

Query: 17   PEIMEDEANSDSEKDLCTPKENESDLNQNYKNDKMNENEIII----KATVIPDEIVKSSE 184
            PE M D++    +++    +  +  LN+   ND + + E+I+        + DEI  + +
Sbjct: 1078 PEDMSDKSEYSGQQEDLDKQVTDFSLNEQANNDLLEKEEVILHHADDQRSVNDEI--TID 1135

Query: 185  EKTSDWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSN-GMNHTTEDYIES 361
            EK S+ ++ +    E+  V V ES   + +    V+    E +V  N GM        ++
Sbjct: 1136 EKLSERIIDN----ELATVDVNESLAANKEQ---VDLFTDEYAVDDNVGMQDDDSGQYQT 1188

Query: 362  NSESEMTGSNIATCIDDLIQTGEMWTNEKEQLLSEDDDFRNEALRHLYMREELISIKNDL 541
              +  + G+NI   I ++ QT  +     E++ + D+D   EA        +++ +  + 
Sbjct: 1189 KEDLFVDGNNIIEKI-EIQQTSLLNQEICERVDNVDEDISGEAKNESVEMNDVVDLVPEA 1247

Query: 542  KTRLSSEANEIARLKRNIESLEEEK 616
            K     + + +   K N+E++E+ K
Sbjct: 1248 KVTGDEQISPLQDEKLNLETMEDTK 1272
>sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50 (AtRAD50)
          Length = 1316

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
 Frame = +2

Query: 212  DEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSNGMNHTTEDYIESNSESEMTGSN 391
            +E   E++ +  ++ + H +   L  + + +E+ +S        +    +  E +   +N
Sbjct: 840  EEIQSELSSLQSSKDKLHGELEKLRDDQIYMERDISC------LQARWHAVREEKAKAAN 893

Query: 392  IATCIDDLIQTGEMWTNEKEQLLSEDDDFRNEALRHLYM-REELISIKNDLKTRLSSEAN 568
            +   +    +  E    EK QL   D  +  EAL  L   +E+L+S  ND+K R + E  
Sbjct: 894  LLRDVTKAEEDLERLAEEKSQL-DLDVKYLTEALGPLSKEKEQLLSDYNDMKIRRNQEYE 952

Query: 569  EIARLKRNIESLEEEKLLKTFSVQNQYRKLNE 664
            E+A  KRN +  E E LLK     N+Y  L +
Sbjct: 953  ELAEKKRNYQQ-EVEALLKASYKINEYHDLKK 983
>sp|P47170|YJ9G_YEAST Hypothetical 182.0 kDa protein in NMD5-HOM6 intergenic region
          Length = 1584

 Score = 38.5 bits (88), Expect = 0.025
 Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 18/219 (8%)
 Frame = +2

Query: 20   EIMED-EANSDSEKDLCTPKENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEEKTS 196
            E M D + N+   K LC     +     N K D + EN++++KA  IP     +      
Sbjct: 555  EFMNDYDKNAFEVKILCAGSNTKQSKKLNSKFDTVFENDVVVKARKIPATATTTHGNTKF 614

Query: 197  DW---------LMSDEQPQEVTHVIV--TESQFHSDDNHLTVNSVEIEQSVSSNGMNHTT 343
             W         +   ++P  +  + +   E+ F+ D N  T N  +I    +SN  N   
Sbjct: 615  IWRGPKVALPAIKDIQKPNVIPDLSIKTIEASFYDDCN--TTND-KISTPTTSNNDNLEM 671

Query: 344  EDYIESNSESEMTGSNIATCIDDL------IQTGEMWTNEKEQLLSEDDDFRNEALRHLY 505
             D + S   ++    N +  +D L          +       + +S  D  +N+ ++   
Sbjct: 672  NDSLVSVRSAD--NQNTSLALDSLKGLSKRNSLKDFTQRVITKFISNIDTSKNKKIKSTL 729

Query: 506  MREELISIKNDLKTRLSSEANEIARLKRNIESLEEEKLL 622
            +R+++ +      T L S  ++I+ LK   + L +E ++
Sbjct: 730  LRDDVDNSPLGSNTPLPSSESKISGLKLQQKGLADENVI 768
>sp|P36358|VS10_ROTPC Minor outer capsid protein (NS26)
          Length = 210

 Score = 37.7 bits (86), Expect = 0.042
 Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 4/153 (2%)
 Frame = +2

Query: 128 NEIIIKATVIPDEIV-KSSEEKTSDWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEI 304
           N++ +K ++I + ++   SE  ++D +   E+        V +    S D       +  
Sbjct: 62  NDLAVKTSIITEAVICDESEHVSADAIQEKEESIMQVDDNVMKWMMDSHDGISMNGGINF 121

Query: 305 EQSVSSNGMNHTTEDYIESNSESEMTGSNIATCIDDLIQTGEMWTNEKEQLLSE---DDD 475
            +S S  G +    D+ ES SE+ ++    A     L     +    K++ +SE   D+D
Sbjct: 122 SRSKSKTGRS----DFTESKSETSVSAHVSAGISSQLGMFNPIQNTVKKEAISEMFEDED 177

Query: 476 FRNEALRHLYMREELISIKNDLKTRLSSEANEI 574
                 R+   RE+ + ++N +K+ L    NE+
Sbjct: 178 GDGCTCRNCPYREKYLKLRNKMKSVLVDMINEM 210
>sp|Q9P7S5|UBP7_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 7 (Ubiquitin
            thiolesterase 7) (Ubiquitin-specific processing protease
            7) (Deubiquitinating enzyme 7)
          Length = 875

 Score = 37.7 bits (86), Expect = 0.042
 Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 5/173 (2%)
 Frame = +2

Query: 8    RDTPEIMEDEANSDSEKDLCTPKENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEE 187
            + + +I+ D AN D+++    P  N S LN+N      +EN          D+ +K S  
Sbjct: 584  KSSVKIVVDNANDDTDQ---APTTNSSSLNENLLGGHASEN----------DKSLKQSPF 630

Query: 188  KTSDWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSNGMNH--TTEDYIES 361
            +     +SD        + V  S   S  +    NS+  E S+SS  +    T  D +++
Sbjct: 631  QKLTRRLSD--------LSVNSSGQISKQDFDNSNSIFSESSLSSPIIEEPKTLIDCLKN 682

Query: 362  NSE-SEMTGSNIATCIDDLIQTGEMWTNEKEQLLSEDD--DFRNEALRHLYMR 511
             +   E++G N+  C +   Q  E+ +  K  L S++D   F N   R+ Y R
Sbjct: 683  FTHVEELSGENMFACENCCNQPNEVGSPAKGGLTSDNDKYSFNNSVYRNAYKR 735
>sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal muscle, embryonic
          Length = 1940

 Score = 37.7 bits (86), Expect = 0.042
 Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 3/193 (1%)
 Frame = +2

Query: 23   IMEDEANSDSEKDLCTPKENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEEKTSDW 202
            + + E + ++    C   E      QN   D M + E    A    D+  K+ ++  S+W
Sbjct: 1402 LQDAEEHVEAVNSKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQKNFDKILSEW 1461

Query: 203  LMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVE--IEQSVSSNGMNHTTEDYIESNSESE 376
                E+ Q        ES+  S +     N+ E  ++   +    N   +  I   +E  
Sbjct: 1462 KQKYEETQAELEASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQQEISDLTEQI 1521

Query: 377  MTGSNIATCIDDLIQTGEMWTNEKEQLLSEDD-DFRNEALRHLYMREELISIKNDLKTRL 553
              G      ++ + +  E   +E +  L E +    +E  + L ++ EL  +K+D+  ++
Sbjct: 1522 AEGGKAIHELEKVKKQIEQEKSELQTALEEAEASLEHEEGKILRVQLELNQVKSDIDRKI 1581

Query: 554  SSEANEIARLKRN 592
            + +  EI +LKRN
Sbjct: 1582 AEKDEEIDQLKRN 1594
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,342,717
Number of Sequences: 369166
Number of extensions: 1202916
Number of successful extensions: 6042
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5084
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)