Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02717
(877 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25386|USO1_YEAST Intracellular protein transport protei... 49 2e-05
sp|Q8T5T1|MDN1_GIALA Midasin (MIDAS-containing protein) 44 6e-04
sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 42 0.002
sp|P34127|MYBH_DICDI Myb-like protein 42 0.002
sp|Q01550|TANA_XENLA Tanabin 42 0.003
sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50 (AtRAD50) 41 0.005
sp|P47170|YJ9G_YEAST Hypothetical 182.0 kDa protein in NMD5... 39 0.025
sp|P36358|VS10_ROTPC Minor outer capsid protein (NS26) 38 0.042
sp|Q9P7S5|UBP7_SCHPO Probable ubiquitin carboxyl-terminal h... 38 0.042
sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal musc... 38 0.042
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
Length = 1790
Score = 48.5 bits (114), Expect = 2e-05
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 1/201 (0%)
Frame = +2
Query: 20 EIMEDEANSDSEKDLCTP-KENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEEKTS 196
E++E ++ S +L E L NYK D ENE +IKA E K
Sbjct: 942 ELVEYKSRFQSHDNLVAKLTEKLKSLANNYK-DMQAENESLIKAV---------EESKNE 991
Query: 197 DWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSNGMNHTTEDYIESNSESE 376
+ ++ + + F + + N ++++++S + T E+ I + S+
Sbjct: 992 SSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISD--LEQTKEEIISKSDSSK 1049
Query: 377 MTGSNIATCIDDLIQTGEMWTNEKEQLLSEDDDFRNEALRHLYMREELISIKNDLKTRLS 556
+ + + + ++T +E +SE R E L + L KN+L+T+L
Sbjct: 1050 DEYESQISLLKEKLETATTANDENVNKISELTKTREELEAELAAYKNL---KNELETKLE 1106
Query: 557 SEANEIARLKRNIESLEEEKL 619
+ + +K N E L+EEK+
Sbjct: 1107 TSEKALKEVKENEEHLKEEKI 1127
>sp|Q8T5T1|MDN1_GIALA Midasin (MIDAS-containing protein)
Length = 4835
Score = 43.9 bits (102), Expect = 6e-04
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 16/211 (7%)
Frame = +2
Query: 32 DEANSDSEKDLCTPKENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEEKTS-DWLM 208
D+ N + DL P E+D N+++ E + + PD+ + EE D
Sbjct: 4211 DDKNLSGQSDLSVP---EADGEDETVNEELEEEQQQMSDLSNPDQDACAIEEDDDRDLPS 4267
Query: 209 SDEQPQEVTHVIVTESQFHSDDNHL-----TVNSVEIEQSVSSNGMNHTTEDYIESNSES 373
SDE +E E+ DDN T N + + +++ + T D E ++
Sbjct: 4268 SDENAEEHDE---HEAPVDIDDNEASDEQSTYNDNDRDDAINISAQQQATNDEEEMQKDT 4324
Query: 374 EMTGSNIATCIDDLIQTGEMWTNEKEQLLSEDDDFRNEALRHLYMRE----------ELI 523
E NI D + G TN+++Q ++D FR E + + E E
Sbjct: 4325 EYDQENITDSNPDANEVG---TNDQKQTHEDNDQFRQENIEDQWEAESTENSQGEGAESA 4381
Query: 524 SIKNDLKTRLSSEANEIARLKRNIESLEEEK 616
+K E I + + NI E EK
Sbjct: 4382 DLKEGNPDMSLEEFQRIWKERLNIHDRESEK 4412
>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15
Length = 1957
Score = 42.4 bits (98), Expect = 0.002
Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 10/231 (4%)
Frame = +2
Query: 2 LPRDTPEIMEDEANSDSEKDLCTPKENE-----SDLNQNYKNDKMNENEIIIKATVIPDE 166
L +++ ++ + ++EK L + E L K ++ +++ K T +E
Sbjct: 897 LEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEE 956
Query: 167 IVKSSEEKTSDWLMSDEQPQEVTHVIVTESQFHSDDNHL--TVNSVEIEQSVSSNGMNHT 340
I EE S ++ + S+ +D HL V+ VE+E++ + N
Sbjct: 957 ISNLKEENMSQSQAITSVKSKLDETLSKSSKLEADIEHLKNKVSEVEVERN-ALLASNER 1015
Query: 341 TEDYIESNSESEMTGSNIATCIDDLIQTGEMWTNEKEQLLSEDDDFRNEALRHLYMREEL 520
D +++N G NIA+ +QT E E+ +E+DD +++ E L
Sbjct: 1016 LMDDLKNN------GENIAS-----LQT------EIEKKRAENDDLQSKLSVVSSEYENL 1058
Query: 521 ISIKNDLKTRLSSEANEIARLKRNIESLEEEKLLKTFSVQ---NQYRKLNE 664
+ I + L + N++ +++N++ L +EK + ++ ++Y KL E
Sbjct: 1059 LLISSQTNKSLEDKTNQLKYIEKNVQKLLDEKDQRNVELEELTSKYGKLGE 1109
Score = 30.4 bits (67), Expect = 6.7
Identities = 35/166 (21%), Positives = 71/166 (42%), Gaps = 7/166 (4%)
Frame = +2
Query: 182 EEKTSDWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSNGMNHTTEDYIES 361
+ + DWL+ ++ +E F + +T N +E+ G T ++ E
Sbjct: 1329 QHEHDDWLIQRGDLEKALKD--SEKNFLRKEAEMTENIHSLEE-----GKEETKKEIAEL 1381
Query: 362 NS---ESEMTGSNIATCIDDL---IQTGEMWTNEKEQLL-SEDDDFRNEALRHLYMREEL 520
+S ++++ + + +D L I+ E EKE L+ S ++ N+ + L
Sbjct: 1382 SSRLEDNQLATNKLKNQLDHLNQEIRLKEDVLKEKESLIISLEESLSNQRQKE----SSL 1437
Query: 521 ISIKNDLKTRLSSEANEIARLKRNIESLEEEKLLKTFSVQNQYRKL 658
+ KN+L+ L + + + L IES+ K+F + + KL
Sbjct: 1438 LDAKNELEHMLDDTSRKNSSLMEKIESINSSLDDKSFELASAVEKL 1483
Score = 30.0 bits (66), Expect = 8.8
Identities = 47/231 (20%), Positives = 96/231 (41%), Gaps = 29/231 (12%)
Frame = +2
Query: 8 RDTPEIMEDEANSDSEK-DLCTPKENESDLNQNYKNDKMNENEIII-KATVIPDEIVKSS 181
R T + E + EK + C E +S L + K++ N ++ I+ K +I D + S
Sbjct: 270 RQTENSLRAECKTLQEKLEKCAINEEDSKLLEELKHNVANYSDAIVHKDKLIEDLSTRIS 329
Query: 182 E------EKTSDWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSNGMNHTT 343
E E+ + + +++ + + + I + + ++ L VE+++S N H+
Sbjct: 330 EFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKES---NRTIHSQ 386
Query: 344 EDYIESNSES-EMTGSNIATCIDD----LIQTGEMWTNEKEQL----------------L 460
ES S E ++ ID+ L +M QL +
Sbjct: 387 LTDAESKLSSFEQENKSLKGSIDEYQNNLSSKDKMVKQVSSQLEEARSSLAHATGKLAEI 446
Query: 461 SEDDDFRNEALRHLYMREELISIKNDLKTRLSSEANEIARLKRNIESLEEE 613
+ + DF+N+ ++ + I+ DL+ L+S +NE+ I+ ++E
Sbjct: 447 NSERDFQNKKIK------DFEKIEQDLRACLNSSSNELKEKSALIDKKDQE 491
>sp|P34127|MYBH_DICDI Myb-like protein
Length = 451
Score = 42.0 bits (97), Expect = 0.002
Identities = 33/163 (20%), Positives = 77/163 (47%), Gaps = 8/163 (4%)
Frame = +2
Query: 23 IMEDEANSDSEKDLCTPKENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEEKTSDW 202
++ + AN+ + + +NE+D NQN N+ N N ++EE+ +
Sbjct: 22 VILNAANNTNSDNSSNNSDNENDDNQNNNNNNNNNNN-------------NNNEEEEEED 68
Query: 203 LMSDEQPQEVTHVI-----VTESQFHSDD---NHLTVNSVEIEQSVSSNGMNHTTEDYIE 358
D+ Q+ H I + ++ ++++ N++ N + ++++N N+ + I
Sbjct: 69 DDDDDDSQQNRHNISIPFTINKNSINNNNNLINNINNNINNMNNNMNNNNNNNNMNNNIN 128
Query: 359 SNSESEMTGSNIATCIDDLIQTGEMWTNEKEQLLSEDDDFRNE 487
+N S ++ +N T + +T WT+E++Q+L + + N+
Sbjct: 129 NNGNSNISNNN--TPKVEKKKTKGKWTSEEDQILIKAVNLHNQ 169
>sp|Q01550|TANA_XENLA Tanabin
Length = 1744
Score = 41.6 bits (96), Expect = 0.003
Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 5/205 (2%)
Frame = +2
Query: 17 PEIMEDEANSDSEKDLCTPKENESDLNQNYKNDKMNENEIII----KATVIPDEIVKSSE 184
PE M D++ +++ + + LN+ ND + + E+I+ + DEI + +
Sbjct: 1078 PEDMSDKSEYSGQQEDLDKQVTDFSLNEQANNDLLEKEEVILHHADDQRSVNDEI--TID 1135
Query: 185 EKTSDWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSN-GMNHTTEDYIES 361
EK S+ ++ + E+ V V ES + + V+ E +V N GM ++
Sbjct: 1136 EKLSERIIDN----ELATVDVNESLAANKEQ---VDLFTDEYAVDDNVGMQDDDSGQYQT 1188
Query: 362 NSESEMTGSNIATCIDDLIQTGEMWTNEKEQLLSEDDDFRNEALRHLYMREELISIKNDL 541
+ + G+NI I ++ QT + E++ + D+D EA +++ + +
Sbjct: 1189 KEDLFVDGNNIIEKI-EIQQTSLLNQEICERVDNVDEDISGEAKNESVEMNDVVDLVPEA 1247
Query: 542 KTRLSSEANEIARLKRNIESLEEEK 616
K + + + K N+E++E+ K
Sbjct: 1248 KVTGDEQISPLQDEKLNLETMEDTK 1272
>sp|Q9SL02|RAD50_ARATH DNA repair protein RAD50 (AtRAD50)
Length = 1316
Score = 40.8 bits (94), Expect = 0.005
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 1/152 (0%)
Frame = +2
Query: 212 DEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSNGMNHTTEDYIESNSESEMTGSN 391
+E E++ + ++ + H + L + + +E+ +S + + E + +N
Sbjct: 840 EEIQSELSSLQSSKDKLHGELEKLRDDQIYMERDISC------LQARWHAVREEKAKAAN 893
Query: 392 IATCIDDLIQTGEMWTNEKEQLLSEDDDFRNEALRHLYM-REELISIKNDLKTRLSSEAN 568
+ + + E EK QL D + EAL L +E+L+S ND+K R + E
Sbjct: 894 LLRDVTKAEEDLERLAEEKSQL-DLDVKYLTEALGPLSKEKEQLLSDYNDMKIRRNQEYE 952
Query: 569 EIARLKRNIESLEEEKLLKTFSVQNQYRKLNE 664
E+A KRN + E E LLK N+Y L +
Sbjct: 953 ELAEKKRNYQQ-EVEALLKASYKINEYHDLKK 983
>sp|P47170|YJ9G_YEAST Hypothetical 182.0 kDa protein in NMD5-HOM6 intergenic region
Length = 1584
Score = 38.5 bits (88), Expect = 0.025
Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 18/219 (8%)
Frame = +2
Query: 20 EIMED-EANSDSEKDLCTPKENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEEKTS 196
E M D + N+ K LC + N K D + EN++++KA IP +
Sbjct: 555 EFMNDYDKNAFEVKILCAGSNTKQSKKLNSKFDTVFENDVVVKARKIPATATTTHGNTKF 614
Query: 197 DW---------LMSDEQPQEVTHVIV--TESQFHSDDNHLTVNSVEIEQSVSSNGMNHTT 343
W + ++P + + + E+ F+ D N T N +I +SN N
Sbjct: 615 IWRGPKVALPAIKDIQKPNVIPDLSIKTIEASFYDDCN--TTND-KISTPTTSNNDNLEM 671
Query: 344 EDYIESNSESEMTGSNIATCIDDL------IQTGEMWTNEKEQLLSEDDDFRNEALRHLY 505
D + S ++ N + +D L + + +S D +N+ ++
Sbjct: 672 NDSLVSVRSAD--NQNTSLALDSLKGLSKRNSLKDFTQRVITKFISNIDTSKNKKIKSTL 729
Query: 506 MREELISIKNDLKTRLSSEANEIARLKRNIESLEEEKLL 622
+R+++ + T L S ++I+ LK + L +E ++
Sbjct: 730 LRDDVDNSPLGSNTPLPSSESKISGLKLQQKGLADENVI 768
>sp|P36358|VS10_ROTPC Minor outer capsid protein (NS26)
Length = 210
Score = 37.7 bits (86), Expect = 0.042
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 4/153 (2%)
Frame = +2
Query: 128 NEIIIKATVIPDEIV-KSSEEKTSDWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEI 304
N++ +K ++I + ++ SE ++D + E+ V + S D +
Sbjct: 62 NDLAVKTSIITEAVICDESEHVSADAIQEKEESIMQVDDNVMKWMMDSHDGISMNGGINF 121
Query: 305 EQSVSSNGMNHTTEDYIESNSESEMTGSNIATCIDDLIQTGEMWTNEKEQLLSE---DDD 475
+S S G + D+ ES SE+ ++ A L + K++ +SE D+D
Sbjct: 122 SRSKSKTGRS----DFTESKSETSVSAHVSAGISSQLGMFNPIQNTVKKEAISEMFEDED 177
Query: 476 FRNEALRHLYMREELISIKNDLKTRLSSEANEI 574
R+ RE+ + ++N +K+ L NE+
Sbjct: 178 GDGCTCRNCPYREKYLKLRNKMKSVLVDMINEM 210
>sp|Q9P7S5|UBP7_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 7 (Ubiquitin
thiolesterase 7) (Ubiquitin-specific processing protease
7) (Deubiquitinating enzyme 7)
Length = 875
Score = 37.7 bits (86), Expect = 0.042
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 5/173 (2%)
Frame = +2
Query: 8 RDTPEIMEDEANSDSEKDLCTPKENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEE 187
+ + +I+ D AN D+++ P N S LN+N +EN D+ +K S
Sbjct: 584 KSSVKIVVDNANDDTDQ---APTTNSSSLNENLLGGHASEN----------DKSLKQSPF 630
Query: 188 KTSDWLMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVEIEQSVSSNGMNH--TTEDYIES 361
+ +SD + V S S + NS+ E S+SS + T D +++
Sbjct: 631 QKLTRRLSD--------LSVNSSGQISKQDFDNSNSIFSESSLSSPIIEEPKTLIDCLKN 682
Query: 362 NSE-SEMTGSNIATCIDDLIQTGEMWTNEKEQLLSEDD--DFRNEALRHLYMR 511
+ E++G N+ C + Q E+ + K L S++D F N R+ Y R
Sbjct: 683 FTHVEELSGENMFACENCCNQPNEVGSPAKGGLTSDNDKYSFNNSVYRNAYKR 735
>sp|P02565|MYH3_CHICK Myosin heavy chain, fast skeletal muscle, embryonic
Length = 1940
Score = 37.7 bits (86), Expect = 0.042
Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 3/193 (1%)
Frame = +2
Query: 23 IMEDEANSDSEKDLCTPKENESDLNQNYKNDKMNENEIIIKATVIPDEIVKSSEEKTSDW 202
+ + E + ++ C E QN D M + E A D+ K+ ++ S+W
Sbjct: 1402 LQDAEEHVEAVNSKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQKNFDKILSEW 1461
Query: 203 LMSDEQPQEVTHVIVTESQFHSDDNHLTVNSVE--IEQSVSSNGMNHTTEDYIESNSESE 376
E+ Q ES+ S + N+ E ++ + N + I +E
Sbjct: 1462 KQKYEETQAELEASQKESRSLSTELFKMKNAYEESLDHLETLKRENKNLQQEISDLTEQI 1521
Query: 377 MTGSNIATCIDDLIQTGEMWTNEKEQLLSEDD-DFRNEALRHLYMREELISIKNDLKTRL 553
G ++ + + E +E + L E + +E + L ++ EL +K+D+ ++
Sbjct: 1522 AEGGKAIHELEKVKKQIEQEKSELQTALEEAEASLEHEEGKILRVQLELNQVKSDIDRKI 1581
Query: 554 SSEANEIARLKRN 592
+ + EI +LKRN
Sbjct: 1582 AEKDEEIDQLKRN 1594
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,342,717
Number of Sequences: 369166
Number of extensions: 1202916
Number of successful extensions: 6042
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5084
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)