Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02716
(632 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WVJ2|NUDC2_HUMAN NudC domain containing protein 2 160 3e-39
sp|Q9CQ48|NUDC2_MOUSE NudC domain containing protein 2 159 7e-39
sp|Q5M823|NUDC2_RAT NudC domain containing protein 2 158 1e-38
sp|O35685|NUDC_MOUSE Nuclear migration protein nudC (Nuclea... 48 2e-05
sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC (Nuclea... 47 5e-05
sp|Q63525|NUDC_RAT Nuclear migration protein nudC (Nuclear ... 46 9e-05
sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC (Nuclea... 44 3e-04
sp|P17624|NUDC_EMENI Nuclear movement protein nudC 39 0.014
sp|Q8IVD9|NUDC3_HUMAN NudC domain containing protein 3 37 0.032
sp|Q8R1N4|NUDC3_MOUSE NudC domain containing protein 3 36 0.094
>sp|Q8WVJ2|NUDC2_HUMAN NudC domain containing protein 2
Length = 157
Score = 160 bits (404), Expect = 3e-39
Identities = 75/150 (50%), Positives = 104/150 (69%)
Frame = +2
Query: 131 FDEKSGFIAIDTVWGRWYQTLEEIFVEVNLEKGTSAKDINCKITNKNINLSVKNQPGCSI 310
F+E+SG + T WG+WYQTLEE+F+EV + GT A+DI C + ++++ LSV + +
Sbjct: 5 FEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE--IL 62
Query: 311 VGSFHKCIKAEESTWSLEDKQLIRICLTKASSDPKGNSWNSLLEDQYAANPWQMNEIQKK 490
G A+E TW+LED++++RI LTK D N W SLLE +YAA+PW +++Q+K
Sbjct: 63 KGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDA-ANCWTSLLESEYAADPWVQDQMQRK 121
Query: 491 LTLQNLQFENPGMDFSGAEISGNYQDGGPN 580
LTL+ Q ENPG DFSGAEISGNY GGP+
Sbjct: 122 LTLERFQKENPGFDFSGAEISGNYTKGGPD 151
>sp|Q9CQ48|NUDC2_MOUSE NudC domain containing protein 2
Length = 157
Score = 159 bits (401), Expect = 7e-39
Identities = 74/150 (49%), Positives = 104/150 (69%)
Frame = +2
Query: 131 FDEKSGFIAIDTVWGRWYQTLEEIFVEVNLEKGTSAKDINCKITNKNINLSVKNQPGCSI 310
F+E+SG + T WG+WYQTLEE+F+EV + GT A+DI C + ++++ L+V + +
Sbjct: 5 FEERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE--IL 62
Query: 311 VGSFHKCIKAEESTWSLEDKQLIRICLTKASSDPKGNSWNSLLEDQYAANPWQMNEIQKK 490
G A+E TW+LED++++RI LTK D N W SLLE +YAA+PW +++Q+K
Sbjct: 63 KGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDA-ANCWTSLLESEYAADPWVQDQMQRK 121
Query: 491 LTLQNLQFENPGMDFSGAEISGNYQDGGPN 580
LTL+ Q ENPG DFSGAEISGNY GGP+
Sbjct: 122 LTLERFQKENPGFDFSGAEISGNYTKGGPD 151
>sp|Q5M823|NUDC2_RAT NudC domain containing protein 2
Length = 157
Score = 158 bits (400), Expect = 1e-38
Identities = 74/150 (49%), Positives = 104/150 (69%)
Frame = +2
Query: 131 FDEKSGFIAIDTVWGRWYQTLEEIFVEVNLEKGTSAKDINCKITNKNINLSVKNQPGCSI 310
F+E+SG + T WG+WYQTLEE+F+EV + GT A+DI C + ++++ L+V + +
Sbjct: 5 FEERSGVVPCATPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE--IL 62
Query: 311 VGSFHKCIKAEESTWSLEDKQLIRICLTKASSDPKGNSWNSLLEDQYAANPWQMNEIQKK 490
G A+E TW+LED++++RI LTK D N W SLLE +YAA+PW +++Q+K
Sbjct: 63 KGKLFDSTIADEGTWTLEDRKMVRIVLTKTKRDA-ANCWTSLLESEYAADPWVQDQMQRK 121
Query: 491 LTLQNLQFENPGMDFSGAEISGNYQDGGPN 580
LTL+ Q ENPG DFSGAEISGNY GGP+
Sbjct: 122 LTLERFQKENPGFDFSGAEISGNYTKGGPD 151
>sp|O35685|NUDC_MOUSE Nuclear migration protein nudC (Nuclear distribution protein C
homolog) (Silica-induced gene 92 protein) (SIG-92)
Length = 332
Score = 48.1 bits (113), Expect = 2e-05
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Frame = +2
Query: 176 RWYQTLEEIFVEVNLEKG--TSAKDINCKITNKNINLSVKNQPGCSIVGSFHKCIKAEES 349
RW QTL E+ + V KD+ I +++ + +K QP + G + +K EES
Sbjct: 174 RWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPV-VDGELYNEVKVEES 232
Query: 350 TWSLEDKQLIRICLTKASSDPKGNSWNSLLEDQYAANPWQMNEIQKKLT 496
+W +ED +++ + L K + K WN L+ N ++N KL+
Sbjct: 233 SWLIEDGKVVTVHLEKIN---KMEWWNRLVTSDPEINTKKINPENSKLS 278
>sp|Q9Y266|NUDC_HUMAN Nuclear migration protein nudC (Nuclear distribution protein C
homolog)
Length = 331
Score = 46.6 bits (109), Expect = 5e-05
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Frame = +2
Query: 176 RWYQTLEEIFVEVN--LEKGTSAKDINCKITNKNINLSVKNQPGCSIVGSFHKCIKAEES 349
RW QTL E+ + V + KD+ I +++ + +K QP I G + +K EES
Sbjct: 173 RWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAI-IDGELYNEVKVEES 231
Query: 350 TWSLEDKQLIRICLTKASSDPKGNSWNSLLEDQYAANPWQMNEIQKKLT 496
+W +ED +++ + L K + K W+ L+ N ++N KL+
Sbjct: 232 SWLIEDGKVVTVHLEKIN---KMEWWSRLVSSDPEINTKKINPENSKLS 277
>sp|Q63525|NUDC_RAT Nuclear migration protein nudC (Nuclear distribution protein C
homolog) (c15)
Length = 332
Score = 45.8 bits (107), Expect = 9e-05
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Frame = +2
Query: 176 RWYQTLEEIFVEVNLEKG--TSAKDINCKITNKNINLSVKNQPGCSIVGSFHKCIKAEES 349
RW QTL E+ + V KD+ I +++ + +K Q I G + +K EES
Sbjct: 174 RWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPV-IDGELYNEVKVEES 232
Query: 350 TWSLEDKQLIRICLTKASSDPKGNSWNSLLEDQYAANPWQMNEIQKKLT 496
+W +ED +++ + L K + K WN L+ N ++N KL+
Sbjct: 233 SWLIEDGKVVTVHLEKIN---KMEWWNRLVTSDPEINTKKINPENSKLS 278
>sp|Q5ZIN1|NUDC_CHICK Nuclear migration protein nudC (Nuclear distribution protein C
homolog)
Length = 341
Score = 44.3 bits (103), Expect = 3e-04
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = +2
Query: 176 RWYQTLEEIFVEVNLEKG--TSAKDINCKITNKNINLSVKNQPGCSIVGSFHKCIKAEES 349
RW QTL E+ + + + KD+ I + + + +K P I G +K EES
Sbjct: 183 RWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPV-IDGELFNEVKVEES 241
Query: 350 TWSLEDKQLIRICLTKASSDPKGNSWNSLLEDQYAANPWQMNEIQKKLT 496
+W +ED + + + L K + K WN L+ N ++N KL+
Sbjct: 242 SWLIEDGKTVTVHLEKIN---KMEWWNKLVSTDPEINTKKINPENSKLS 287
>sp|P17624|NUDC_EMENI Nuclear movement protein nudC
Length = 198
Score = 38.5 bits (88), Expect = 0.014
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 176 RWYQTLEEIFVEVNLEKGTSAKDINCKITNKNINLSVKNQPG-CSIVGSFHKCIKAEEST 352
+W QT+ ++ V + + +D++ + +I + VK + G I G F IK ES+
Sbjct: 35 KWTQTIRDVDVTIPVSANLKGRDLDVVLKKDSIKVKVKGENGEVFIDGQFPHPIKPSESS 94
Query: 353 WSLE 364
W+LE
Sbjct: 95 WTLE 98
>sp|Q8IVD9|NUDC3_HUMAN NudC domain containing protein 3
Length = 361
Score = 37.4 bits (85), Expect = 0.032
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Frame = +2
Query: 128 NFDEKSGFIAIDTVWGRWYQTLE-EIFVEVNLEKGTSAKDINCKITNKNINLSVKNQPGC 304
N D +G + + W + Y LE + V ++ KG K ++ +++ +I +++ + G
Sbjct: 178 NPDSYNGAVRENYTWSQDYTDLEVRVPVPKHVVKG---KQVSVALSSSSIRVAMLEENGE 234
Query: 305 SIV--GSFHKCIKAEESTWSLEDKQLIRICLTKASSDPKGNSWNSLLEDQYAANPWQMNE 478
++ G I E S WSLE + + + L+K WN++LE + P +++
Sbjct: 235 CVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKVGE----YWWNAILEGE---EPIDIDK 287
Query: 479 IQKKLTLQNLQFE 517
I K+ ++ + E
Sbjct: 288 INKERSMATVDEE 300
>sp|Q8R1N4|NUDC3_MOUSE NudC domain containing protein 3
Length = 363
Score = 35.8 bits (81), Expect = 0.094
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Frame = +2
Query: 128 NFDEKSGFIAIDTVWGRWYQTLE-EIFVEVNLEKGTSAKDINCKITNKNINLSVKNQPGC 304
N D +G I + +W + Y LE + V ++ KG K ++ +++ I +++ + G
Sbjct: 180 NPDSYNGAIRENYIWSQDYTDLEVRVPVPKHVMKG---KQVSVALSSGTIRVAMVEENGE 236
Query: 305 SIV--GSFHKCIKAEESTWSLEDKQLIRICLTKASSDPKGNSWNSLLEDQYAANPWQMNE 478
++ G I E S WSLE + + + L+K W+++LE + P +++
Sbjct: 237 RVLMEGKLTHKINTESSLWSLEPGRCVLVNLSKVGE----YWWSAILEGE---EPIDIDK 289
Query: 479 IQKKLTLQNLQFE 517
I K+ ++ + E
Sbjct: 290 INKERSMATVDEE 302
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,337,950
Number of Sequences: 369166
Number of extensions: 1058865
Number of successful extensions: 2462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2456
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)