Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02714
(343 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40797|PNUT_DROME Protein peanut 32 0.59
sp|Q43033|TCMO_PETCR Trans-cinnamate 4-monooxygenase (Cinna... 32 0.59
sp|P08096|TOP2_SCHPO DNA topoisomerase 2 (DNA topoisomerase... 29 3.0
sp|P25356|BPH1_YEAST Beige protein homolog 1 29 3.9
sp|P96593|MNTH_BACSU Manganese transport protein mntH 28 5.0
sp|Q6BHF8|ATG23_DEBHA Autophagy-related protein 23 28 5.0
sp|P47533|P69_MYCGE Transport system permease protein p69 28 6.6
sp|Q9H9E3|COG4_HUMAN Conserved oligomeric Golgi complex com... 28 6.6
sp|P48522|TCMO_CATRO Trans-cinnamate 4-monooxygenase (Cinna... 28 8.6
sp|P46013|KI67_HUMAN Antigen KI-67 28 8.6
>sp|P40797|PNUT_DROME Protein peanut
Length = 539
Score = 31.6 bits (70), Expect = 0.59
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = -3
Query: 341 LQITKMFEERTNCNCLPNKRKKLSEIIERFTGEKKKYEAVNHVENNEVQNKITEFESEGD 162
L++ + EER L + ++L E F EKK++E VNHV E++ + S D
Sbjct: 468 LELARRHEERKKA--LELQIRELEEKRREFEREKKEWEDVNHVTLEELKRRSLGANSSTD 525
Query: 161 IFHGNME 141
G E
Sbjct: 526 NVDGKKE 532
>sp|Q43033|TCMO_PETCR Trans-cinnamate 4-monooxygenase (Cinnamic acid 4-hydroxylase)
(CA4H) (C4H) (P450C4H) (Cytochrome P450 73)
Length = 506
Score = 31.6 bits (70), Expect = 0.59
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 299 CLPNKRKKLSEIIERFTGEKKKYEAVNHVENNEVQ---NKITEFESEGDIFHGNM 144
C K K+L + F E+KK E++ V+NN ++ + I E + +G+I N+
Sbjct: 243 CQEIKDKRLKLFKDYFVDERKKLESIKSVDNNSLKCAIDHIIEAQQKGEINEDNV 297
>sp|P08096|TOP2_SCHPO DNA topoisomerase 2 (DNA topoisomerase II)
Length = 1485
Score = 29.3 bits (64), Expect = 3.0
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Frame = -3
Query: 290 NKRKKLSEIIERFTGEKKKYEAVN-----HVENNEVQNKITEFESEGDIFHG-NME*YNY 129
+K+KK I+E ++KK++ ++ H+ + EV+N + E E GD+ + + YNY
Sbjct: 1095 SKKKKKDLIVEL---KEKKFQPISKPKKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNY 1151
Query: 128 INS 120
+ S
Sbjct: 1152 LLS 1154
>sp|P25356|BPH1_YEAST Beige protein homolog 1
Length = 2167
Score = 28.9 bits (63), Expect = 3.9
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 207 IFNMIYCLIFLFLASKAFNDFTQFLSFIW 293
I N Y L LA ++FND TQ+ F W
Sbjct: 1565 ISNFYYLLSINILAGRSFNDLTQYPVFPW 1593
>sp|P96593|MNTH_BACSU Manganese transport protein mntH
Length = 425
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 159 NISLAFKLGYFILYFIIFNMIYCLIFLFLASK 254
NIS K GY +L+ I+F+ I L+ L++K
Sbjct: 53 NISAGSKYGYMLLWVILFSNIMALLIQSLSAK 84
>sp|Q6BHF8|ATG23_DEBHA Autophagy-related protein 23
Length = 905
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -3
Query: 302 NCLPNKRKKLSEIIERFTGEKKKYEAVNHVENNEVQNKITEFESEGD 162
N L + K+L + +E + +K+YE+ + N+E++ K TE S D
Sbjct: 513 NTLREQIKRLEKSVEDKSISQKEYESQIKILNDEIKEKDTEISSLTD 559
>sp|P47533|P69_MYCGE Transport system permease protein p69
Length = 543
Score = 28.1 bits (61), Expect = 6.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Frame = +3
Query: 195 LYFIIFNMIYCLIFLFLASKAFND------FTQFLSFIWQTIAISSFFEH 326
L I+ L+F FL S FN + SF+W T I++FFE+
Sbjct: 114 LITIVLRAFPVLLFGFLFSNLFNKQLAATLTISWFSFLWNTKYITTFFEN 163
>sp|Q9H9E3|COG4_HUMAN Conserved oligomeric Golgi complex component 4
Length = 785
Score = 28.1 bits (61), Expect = 6.6
Identities = 8/34 (23%), Positives = 23/34 (67%)
Frame = -3
Query: 281 KKLSEIIERFTGEKKKYEAVNHVENNEVQNKITE 180
+++ +++++F ++ ++ HV+NN ++N TE
Sbjct: 312 RQVEKVVDKFIKQRDYHQQFRHVQNNLMRNSTTE 345
>sp|P48522|TCMO_CATRO Trans-cinnamate 4-monooxygenase (Cinnamic acid 4-hydroxylase)
(CA4H) (C4H) (P450C4H) (Cytochrome P450 73)
Length = 505
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = -3
Query: 299 CLPNKRKKLSEIIERFTGEKKKYEAVNHVENNEVQ---NKITEFESEGDIFHGNM 144
C K ++L + F E+KK+ + ++NN ++ + I E + +G+I N+
Sbjct: 242 CKEVKERRLQLFKDYFVDERKKFGSTKSMDNNSLKCAIDHILEAQQKGEINEDNV 296
>sp|P46013|KI67_HUMAN Antigen KI-67
Length = 3256
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 293 PNKRKKLSEIIERFTGEKKKYEAVNHVENNEVQNKITE 180
P K+ +E +E G K+ ++ H E + +KITE
Sbjct: 2424 PQTPKEKAEALEDLVGFKELFQTPGHTEESMTDDKITE 2461
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,501,498
Number of Sequences: 369166
Number of extensions: 511178
Number of successful extensions: 2008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)