Planaria EST Database


DrC_02714

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02714
         (343 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40797|PNUT_DROME  Protein peanut                               32   0.59 
sp|Q43033|TCMO_PETCR  Trans-cinnamate 4-monooxygenase (Cinna...    32   0.59 
sp|P08096|TOP2_SCHPO  DNA topoisomerase 2 (DNA topoisomerase...    29   3.0  
sp|P25356|BPH1_YEAST  Beige protein homolog 1                      29   3.9  
sp|P96593|MNTH_BACSU  Manganese transport protein mntH             28   5.0  
sp|Q6BHF8|ATG23_DEBHA  Autophagy-related protein 23                28   5.0  
sp|P47533|P69_MYCGE  Transport system permease protein p69         28   6.6  
sp|Q9H9E3|COG4_HUMAN  Conserved oligomeric Golgi complex com...    28   6.6  
sp|P48522|TCMO_CATRO  Trans-cinnamate 4-monooxygenase (Cinna...    28   8.6  
sp|P46013|KI67_HUMAN  Antigen KI-67                                28   8.6  
>sp|P40797|PNUT_DROME Protein peanut
          Length = 539

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -3

Query: 341 LQITKMFEERTNCNCLPNKRKKLSEIIERFTGEKKKYEAVNHVENNEVQNKITEFESEGD 162
           L++ +  EER     L  + ++L E    F  EKK++E VNHV   E++ +     S  D
Sbjct: 468 LELARRHEERKKA--LELQIRELEEKRREFEREKKEWEDVNHVTLEELKRRSLGANSSTD 525

Query: 161 IFHGNME 141
              G  E
Sbjct: 526 NVDGKKE 532
>sp|Q43033|TCMO_PETCR Trans-cinnamate 4-monooxygenase (Cinnamic acid 4-hydroxylase)
           (CA4H) (C4H) (P450C4H) (Cytochrome P450 73)
          Length = 506

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = -3

Query: 299 CLPNKRKKLSEIIERFTGEKKKYEAVNHVENNEVQ---NKITEFESEGDIFHGNM 144
           C   K K+L    + F  E+KK E++  V+NN ++   + I E + +G+I   N+
Sbjct: 243 CQEIKDKRLKLFKDYFVDERKKLESIKSVDNNSLKCAIDHIIEAQQKGEINEDNV 297
>sp|P08096|TOP2_SCHPO DNA topoisomerase 2 (DNA topoisomerase II)
          Length = 1485

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
 Frame = -3

Query: 290  NKRKKLSEIIERFTGEKKKYEAVN-----HVENNEVQNKITEFESEGDIFHG-NME*YNY 129
            +K+KK   I+E    ++KK++ ++     H+ + EV+N + E E  GD+    + + YNY
Sbjct: 1095 SKKKKKDLIVEL---KEKKFQPISKPKKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNY 1151

Query: 128  INS 120
            + S
Sbjct: 1152 LLS 1154
>sp|P25356|BPH1_YEAST Beige protein homolog 1
          Length = 2167

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 207  IFNMIYCLIFLFLASKAFNDFTQFLSFIW 293
            I N  Y L    LA ++FND TQ+  F W
Sbjct: 1565 ISNFYYLLSINILAGRSFNDLTQYPVFPW 1593
>sp|P96593|MNTH_BACSU Manganese transport protein mntH
          Length = 425

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 159 NISLAFKLGYFILYFIIFNMIYCLIFLFLASK 254
           NIS   K GY +L+ I+F+ I  L+   L++K
Sbjct: 53  NISAGSKYGYMLLWVILFSNIMALLIQSLSAK 84
>sp|Q6BHF8|ATG23_DEBHA Autophagy-related protein 23
          Length = 905

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = -3

Query: 302 NCLPNKRKKLSEIIERFTGEKKKYEAVNHVENNEVQNKITEFESEGD 162
           N L  + K+L + +E  +  +K+YE+   + N+E++ K TE  S  D
Sbjct: 513 NTLREQIKRLEKSVEDKSISQKEYESQIKILNDEIKEKDTEISSLTD 559
>sp|P47533|P69_MYCGE Transport system permease protein p69
          Length = 543

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +3

Query: 195 LYFIIFNMIYCLIFLFLASKAFND------FTQFLSFIWQTIAISSFFEH 326
           L  I+      L+F FL S  FN          + SF+W T  I++FFE+
Sbjct: 114 LITIVLRAFPVLLFGFLFSNLFNKQLAATLTISWFSFLWNTKYITTFFEN 163
>sp|Q9H9E3|COG4_HUMAN Conserved oligomeric Golgi complex component 4
          Length = 785

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 8/34 (23%), Positives = 23/34 (67%)
 Frame = -3

Query: 281 KKLSEIIERFTGEKKKYEAVNHVENNEVQNKITE 180
           +++ +++++F  ++  ++   HV+NN ++N  TE
Sbjct: 312 RQVEKVVDKFIKQRDYHQQFRHVQNNLMRNSTTE 345
>sp|P48522|TCMO_CATRO Trans-cinnamate 4-monooxygenase (Cinnamic acid 4-hydroxylase)
           (CA4H) (C4H) (P450C4H) (Cytochrome P450 73)
          Length = 505

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 299 CLPNKRKKLSEIIERFTGEKKKYEAVNHVENNEVQ---NKITEFESEGDIFHGNM 144
           C   K ++L    + F  E+KK+ +   ++NN ++   + I E + +G+I   N+
Sbjct: 242 CKEVKERRLQLFKDYFVDERKKFGSTKSMDNNSLKCAIDHILEAQQKGEINEDNV 296
>sp|P46013|KI67_HUMAN Antigen KI-67
          Length = 3256

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 293  PNKRKKLSEIIERFTGEKKKYEAVNHVENNEVQNKITE 180
            P   K+ +E +E   G K+ ++   H E +   +KITE
Sbjct: 2424 PQTPKEKAEALEDLVGFKELFQTPGHTEESMTDDKITE 2461
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,501,498
Number of Sequences: 369166
Number of extensions: 511178
Number of successful extensions: 2008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 68,354,980
effective HSP length: 81
effective length of database: 53,391,445
effective search space used: 1708526240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)