Planaria EST Database


DrC_02710

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02710
         (844 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55162|HEM_DROME  Membrane-associated protein Hem (dHem-2)     107   4e-23
sp|P28660|NCKP1_MOUSE  Nck-associated protein 1 (NAP 1) (p12...   103   6e-22
sp|P55161|NCKP1_RAT  Nck-associated protein 1 (NAP 1) (p125N...   103   6e-22
sp|Q9Y2A7|NCKP1_HUMAN  Nck-associated protein 1 (NAP 1) (p12...   103   8e-22
sp|P55160|NCKPL_HUMAN  Nck-associated protein 1-like (Membra...    94   4e-19
sp|P55163|GEX3_CAEEL  Membrane-associated protein gex-3            77   5e-14
sp|P79098|AMPN_BOVIN  Aminopeptidase N (bAPN) (Alanyl aminop...    34   0.58 
sp|P28699|RARG_XENLA  Retinoic acid receptor gamma (RAR-gamma)     32   2.9  
sp|Q90273|RARG2_BRARE  Retinoic acid receptor gamma-2 (RAR-g...    31   3.7  
sp|Q91392|RARG_BRARE  Retinoic acid receptor gamma (RAR-gamm...    31   4.9  
>sp|P55162|HEM_DROME Membrane-associated protein Hem (dHem-2)
          Length = 1126

 Score =  107 bits (267), Expect = 4e-23
 Identities = 65/222 (29%), Positives = 102/222 (45%)
 Frame = +2

Query: 11   DMDLKSFRDVRLDWFRLQTFLSNINSKFPWQQNVPFINFMNSMILHTNFVDNLENFLDKI 190
            D +L  FR  RLDWFRLQT++S   +     ++      ++SM+ HT  VDNL+  L + 
Sbjct: 477  DNELFYFRPFRLDWFRLQTYMSVGKAALRIAEHAELARLLDSMVFHTRVVDNLDEILVET 536

Query: 191  SSLQFLCFHRSKLNEWFEMNLKITAQHRYATIFPRLCGYFINNCQPSCPEDFNEILRSSI 370
            S L   CF+    ++ F M L+  AQ+RY   FP +C +F N     CPE+ + I   S+
Sbjct: 537  SDLSIFCFYNKMFDDQFHMCLEFPAQNRYIIAFPLICSHFQNCTHEMCPEERHHIRERSL 596

Query: 371  EMGHAFLSRICQELCKLLAEMVKSHFDLNSLTQPTSAVDYYRSHLSRKSKDEATGHGKND 550
             + + FL  + +E   ++  +      +     P           +RK KD++     +D
Sbjct: 597  SVVNIFLEEMAKEAKNIITTICDEQCTMADALLPKHCAKILSVQSARKKKDKSKSKHFDD 656

Query: 551  NKIVLSPLPGVESKPKDITVSSKFDMELMALNQLATGLNSRP 676
             +      PG ES  K     +  D   MAL +L   +N  P
Sbjct: 657  IR-----KPGDESYRKTREDLTTMDKLHMALTELCFAINYCP 693
>sp|P28660|NCKP1_MOUSE Nck-associated protein 1 (NAP 1) (p125Nap1) (Membrane-associated
            protein HEM-2) (Brain protein H19) (MH19)
          Length = 1128

 Score =  103 bits (257), Expect = 6e-22
 Identities = 62/222 (27%), Positives = 106/222 (47%)
 Frame = +2

Query: 11   DMDLKSFRDVRLDWFRLQTFLSNINSKFPWQQNVPFINFMNSMILHTNFVDNLENFLDKI 190
            D ++  FR +RLDWFRLQ + S   +      +      MN++I HT  VD+L   L + 
Sbjct: 477  DGEVFDFRGMRLDWFRLQAYTSVSKASLSLADHRELGKMMNTIIFHTKMVDSLVEMLVET 536

Query: 191  SSLQFLCFHRSKLNEWFEMNLKITAQHRYATIFPRLCGYFINNCQPSCPEDFNEILRSSI 370
            S L   CF+     + F+  L++ +Q RY+  FP LC +F++     CPE+ + I   S+
Sbjct: 537  SDLSIFCFYSRAFEKMFQQCLELPSQSRYSIAFPLLCTHFMSCTHELCPEERHHIGDRSL 596

Query: 371  EMGHAFLSRICQELCKLLAEMVKSHFDLNSLTQPTSAVDYYRSHLSRKSKDEATGHGKND 550
             + + FL  + ++   L+ ++      L+    P          +++KSK +    G+ +
Sbjct: 597  SLCNMFLDEMAKQARNLITDICTEQCTLSDQLLPKHCAKTISQAVNKKSKKQTGKKGEPE 656

Query: 551  NKIVLSPLPGVESKPKDITVSSKFDMELMALNQLATGLNSRP 676
             +      PGVES  K+  V +  D    AL++L   +N  P
Sbjct: 657  RE-----KPGVESMRKNRLVVTNLDKLHTALSELCFSINYVP 693
>sp|P55161|NCKP1_RAT Nck-associated protein 1 (NAP 1) (p125Nap1) (Membrane-associated
            protein HEM-2)
          Length = 1128

 Score =  103 bits (257), Expect = 6e-22
 Identities = 62/222 (27%), Positives = 106/222 (47%)
 Frame = +2

Query: 11   DMDLKSFRDVRLDWFRLQTFLSNINSKFPWQQNVPFINFMNSMILHTNFVDNLENFLDKI 190
            D ++  FR +RLDWFRLQ + S   +      +      MN++I HT  VD+L   L + 
Sbjct: 477  DGEVFDFRGMRLDWFRLQAYTSVSKASLSLADHRELGKMMNTIIFHTKMVDSLVEMLVET 536

Query: 191  SSLQFLCFHRSKLNEWFEMNLKITAQHRYATIFPRLCGYFINNCQPSCPEDFNEILRSSI 370
            S L   CF+     + F+  L++ +Q RY+  FP LC +F++     CPE+ + I   S+
Sbjct: 537  SDLSIFCFYSRAFEKMFQQCLELPSQSRYSIAFPLLCTHFMSCTHELCPEERHHIGDRSL 596

Query: 371  EMGHAFLSRICQELCKLLAEMVKSHFDLNSLTQPTSAVDYYRSHLSRKSKDEATGHGKND 550
             + + FL  + ++   L+ ++      L+    P          +++KSK +    G+ +
Sbjct: 597  SLCNMFLDEMAKQARNLITDICTEQCTLSDQLLPKHCAKTISQAVNKKSKKQTGKKGEPE 656

Query: 551  NKIVLSPLPGVESKPKDITVSSKFDMELMALNQLATGLNSRP 676
             +      PGVES  K+  V +  D    AL++L   +N  P
Sbjct: 657  RE-----KPGVESMRKNRLVVTNLDKLHTALSELCFSINYVP 693
>sp|Q9Y2A7|NCKP1_HUMAN Nck-associated protein 1 (NAP 1) (p125Nap1) (Membrane-associated
            protein HEM-2)
          Length = 1128

 Score =  103 bits (256), Expect = 8e-22
 Identities = 62/222 (27%), Positives = 106/222 (47%)
 Frame = +2

Query: 11   DMDLKSFRDVRLDWFRLQTFLSNINSKFPWQQNVPFINFMNSMILHTNFVDNLENFLDKI 190
            D ++  FR +RLDWFRLQ + S   +      +      MN++I HT  VD+L   L + 
Sbjct: 477  DGEVFDFRGMRLDWFRLQAYTSVSKASLGLADHRELGKMMNTIIFHTKMVDSLVEMLVET 536

Query: 191  SSLQFLCFHRSKLNEWFEMNLKITAQHRYATIFPRLCGYFINNCQPSCPEDFNEILRSSI 370
            S L   CF+     + F+  L++ +Q RY+  FP LC +F++     CPE+ + I   S+
Sbjct: 537  SDLSIFCFYSRAFEKMFQQCLELPSQSRYSIAFPLLCTHFMSCTHELCPEERHHIGDRSL 596

Query: 371  EMGHAFLSRICQELCKLLAEMVKSHFDLNSLTQPTSAVDYYRSHLSRKSKDEATGHGKND 550
             + + FL  + ++   L+ ++      L+    P          +++KSK +    G+ +
Sbjct: 597  SLCNMFLDEMAKQARNLITDICTEQCTLSDQLLPKHCAKTISQAVNKKSKKQTGKKGEPE 656

Query: 551  NKIVLSPLPGVESKPKDITVSSKFDMELMALNQLATGLNSRP 676
             +      PGVES  K+  V +  D    AL++L   +N  P
Sbjct: 657  RE-----KPGVESMRKNRLVVTNLDKLHTALSELCFSINYVP 693
>sp|P55160|NCKPL_HUMAN Nck-associated protein 1-like (Membrane-associated protein HEM-1)
            (Hematopoietic protein 1)
          Length = 1127

 Score = 94.4 bits (233), Expect = 4e-19
 Identities = 53/213 (24%), Positives = 98/213 (46%)
 Frame = +2

Query: 29   FRDVRLDWFRLQTFLSNINSKFPWQQNVPFINFMNSMILHTNFVDNLENFLDKISSLQFL 208
            F  +RLDWFRLQ + S   +     +N      MN ++ H+  +D++E  L + S L   
Sbjct: 482  FSGLRLDWFRLQAYHSVAKAPLHLHENPDLAKVMNLIVFHSRMLDSVEKLLVETSDLSTF 541

Query: 209  CFHRSKLNEWFEMNLKITAQHRYATIFPRLCGYFINNCQPSCPEDFNEILRSSIEMGHAF 388
            CFH     + F M L+ +A  RYA  FP +C +F++     CPE++  +    +   ++F
Sbjct: 542  CFHLRIFEKMFAMTLEESAMLRYAIAFPLICAHFVHCTHEMCPEEYPHLKNHGLHHCNSF 601

Query: 389  LSRICQELCKLLAEMVKSHFDLNSLTQPTSAVDYYRSHLSRKSKDEATGHGKNDNKIVLS 568
            L  + ++    + E+     +L+    P           ++K++ +     K + +    
Sbjct: 602  LEELAKQTSNCVLEICAEQRNLSEQLLPKHCATTISKAKNKKTRKQRQTPRKGEPE---R 658

Query: 569  PLPGVESKPKDITVSSKFDMELMALNQLATGLN 667
              PG ES  K+ ++ +  D   + L +LA  +N
Sbjct: 659  DKPGAESHRKNRSIVTNMDKLHLNLTELALTMN 691
>sp|P55163|GEX3_CAEEL Membrane-associated protein gex-3
          Length = 1141

 Score = 77.4 bits (189), Expect = 5e-14
 Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 5/243 (2%)
 Frame = +2

Query: 2    LSTDMDLKSFRDVRLDWFRLQTFLSNINSKFPWQQNVPFINFMNSMILHTNFVDNLENFL 181
            +++D DL++   +RLDWFR Q + S   S F   ++     +MN+ + H   +D  +  L
Sbjct: 474  INSDTDLRA---LRLDWFRFQAWTSAARSHFQLSRHKKLAIYMNTSVFHLKMIDLQDEML 530

Query: 182  DKISSLQFLCFHRSKLNEWFEMN-LKITAQHRYATIFPRLCGYFINNCQPSCPEDFNEIL 358
             + S L   CF+  KL E   +N L++ AQ RY   F RL  +F +     CPE+   I 
Sbjct: 531  RETSDLSLYCFY-PKLAEKHWLNCLQLPAQARYVLSFARLAAHFTSALHDMCPEEKAFIT 589

Query: 359  RSSIEMGHAFLSRICQELCKLLAEMVKSHFDL-NSLTQPTSAVDYYRSHLSRKSKDEATG 535
              ++   ++ +   C++L  +L ++ +  F L   +T    AV      + +K   +A  
Sbjct: 590  EKALAQCNSVIEETCKQLSYILEKVAEHEFGLAYQMTPSAVAVRVVAQVVQQKGSGKAAA 649

Query: 536  HGKNDNKIVLSPLPGVESKPKD---ITVSSKFDMELMALNQLATGLNSRPIYINNRPLQP 706
                  +     + G ES   D   +T+  K    L+ ++  A G + R IY+ +    P
Sbjct: 650  AAAAAARDYF--IAGEESYRVDRQALTMPDKLQTTLLEIS-AALGAH-RQIYVADHTFAP 705

Query: 707  SQY 715
              Y
Sbjct: 706  RTY 708
>sp|P79098|AMPN_BOVIN Aminopeptidase N (bAPN) (Alanyl aminopeptidase) (Microsomal
           aminopeptidase) (Aminopeptidase M) (CD13)
          Length = 234

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 23/95 (24%), Positives = 34/95 (35%)
 Frame = +2

Query: 68  FLSNINSKFPWQQNVPFINFMNSMILHTNFVDNLENFLDKISSLQFLCFHRSKLNEWFEM 247
           FL N     PWQ  V  +N+   M   T     ++N+L       FL F     N W E+
Sbjct: 80  FLKNEMEYMPWQAAVSSLNYFKLMFDRTEVYGPMQNYLKNQVEPIFLYFENLTKN-WTEI 138

Query: 248 NLKITAQHRYATIFPRLCGYFINNCQPSCPEDFNE 352
              +  Q+         C   +  C+      FN+
Sbjct: 139 PENLMDQYSEINAISTACSNGLPKCEELAKTLFNQ 173
>sp|P28699|RARG_XENLA Retinoic acid receptor gamma (RAR-gamma)
          Length = 476

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -2

Query: 210 QRNCKELILSRKFSRLSTKFVCKIIEFIKLMKGTFCCQGNFELILDKNVC 61
           QR   +L L  KFS LSTK + KI+EF K + G        ++ L K+ C
Sbjct: 239 QRVQLDLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSAC 288
>sp|Q90273|RARG2_BRARE Retinoic acid receptor gamma-2 (RAR-gamma-2)
          Length = 367

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -2

Query: 195 ELILSRKFSRLSTKFVCKIIEFIKLMKGTFCCQGNFELILDKNVC 61
           +L L  KFS LSTK + KI+EF K + G        ++ L K+ C
Sbjct: 211 DLGLWDKFSELSTKCIIKIVEFAKALPGFTTLTIADQITLLKSAC 255
>sp|Q91392|RARG_BRARE Retinoic acid receptor gamma (RAR-gamma) (ZRAR gamma)
          Length = 499

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = -2

Query: 195 ELILSRKFSRLSTKFVCKIIEFIKLMKGTFCCQGNFELILDKNVC 61
           +L L  KFS LSTK + KI+EF K + G        ++ L K+ C
Sbjct: 211 DLGLWDKFSELSTKCIIKIVEFAKRLPGFTTLTIADQITLLKSAC 255
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,848,485
Number of Sequences: 369166
Number of extensions: 1803557
Number of successful extensions: 4342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4341
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)