Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02709
(859 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04632|COG8_YEAST Conserved oligomeric Golgi complex com... 35 0.35
sp|Q8YMZ0|PURA_ANASP Adenylosuccinate synthetase (IMP--aspa... 33 1.0
sp|P17608|RYH1_SCHPO GTP-binding protein ryh1 31 3.9
sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A (Rab-6) 31 5.0
sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A (Rab-6) 31 5.0
sp|P06869|UROK_MOUSE Urokinase-type plasminogen activator p... 30 6.6
sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 30 8.6
sp|P04934|MSP1_PLAFC Merozoite surface protein 1 precursor ... 30 8.6
sp|Q8MCS1|MATK_LATAP Maturase K (Intron maturase) 30 8.6
sp|P50495|MSP1_PLAFP Merozoite surface protein 1 precursor ... 30 8.6
>sp|Q04632|COG8_YEAST Conserved oligomeric Golgi complex component 8
Length = 607
Score = 34.7 bits (78), Expect = 0.35
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Frame = -2
Query: 576 PFLRKT----RYYDNAAHKHSGTSQLSTKGNAPGTSLDENDKPKPGEEPINEIDKAALKH 409
PFL +T +Y A ++ T+ L ++ PG+++ + + E+ +NEI L
Sbjct: 204 PFLARTCIRTGHYQEAVMLYTHTTSLRSR--FPGSTIVD----EVCEKVLNEISTTMLSG 257
Query: 408 DIAYRSTDIRDRHLANVNLIHDLNSLPPLDNKEKIQRALVKTAMKFKVL 262
+ ST++ L + + LNS+PP D K V AM++K +
Sbjct: 258 LVKLLSTNVSVNSLKKI--LQYLNSIPPFDGKTNKSLLSVFLAMRYKFI 304
>sp|Q8YMZ0|PURA_ANASP Adenylosuccinate synthetase (IMP--aspartate ligase) (AdSS)
(AMPSase)
Length = 447
Score = 33.1 bits (74), Expect = 1.0
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = -2
Query: 558 RYYDNAAHKHSGTSQLSTKGNAPGTSLDENDKPKPGEEPINEIDKAALKHDIAYRSTDIR 379
R D A+ + G+ ++ T G G + + + + G ++ +D AAL+ + +
Sbjct: 110 RLIDKASEERRGSHKIGTTGRGIGPTYADKSE-RTGIRVLDLMDPAALRDQLEWT----- 163
Query: 378 DRHLANVNLIHD-LNSLPPLDNKEKIQ 301
+ N N+I + L +LPPLD +E IQ
Sbjct: 164 ---INNKNVILEKLYNLPPLDTEEVIQ 187
>sp|P17608|RYH1_SCHPO GTP-binding protein ryh1
Length = 201
Score = 31.2 bits (69), Expect = 3.9
Identities = 27/143 (18%), Positives = 60/143 (41%)
Frame = -2
Query: 702 EERIAHLCRSNLIGQQQARILLENFVKQQNFAFVSLEILK*NPFLRKTRYYDNAAHKHSG 523
E+R L + GQ++ R L+ ++++ + A + +I N F+ ++ ++ +
Sbjct: 56 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGD 115
Query: 522 TSQLSTKGNAPGTSLDENDKPKPGEEPINEIDKAALKHDIAYRSTDIRDRHLANVNLIHD 343
+ GN D DK + +E E +K A + I + T + H +
Sbjct: 116 DVIIVLVGN----KTDLADKRQVTQE---EGEKKAKELKIMHMETSAKAGHNVKLLFRKI 168
Query: 342 LNSLPPLDNKEKIQRALVKTAMK 274
LP ++N E ++ +++
Sbjct: 169 AQMLPGMENVETQSTQMIDVSIQ 191
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A (Rab-6)
Length = 208
Score = 30.8 bits (68), Expect = 5.0
Identities = 19/92 (20%), Positives = 39/92 (42%)
Frame = -2
Query: 702 EERIAHLCRSNLIGQQQARILLENFVKQQNFAFVSLEILK*NPFLRKTRYYDNAAHKHSG 523
E+R L + GQ++ R L+ ++++ A V +I N F + T++ D+ +
Sbjct: 58 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS 117
Query: 522 TSQLSTKGNAPGTSLDENDKPKPGEEPINEID 427
+ GN + + GE E++
Sbjct: 118 DVIIMLVGNKTDLADKRQVSIEEGERKAKELN 149
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A (Rab-6)
Length = 208
Score = 30.8 bits (68), Expect = 5.0
Identities = 19/92 (20%), Positives = 39/92 (42%)
Frame = -2
Query: 702 EERIAHLCRSNLIGQQQARILLENFVKQQNFAFVSLEILK*NPFLRKTRYYDNAAHKHSG 523
E+R L + GQ++ R L+ ++++ A V +I N F + T++ D+ +
Sbjct: 58 EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS 117
Query: 522 TSQLSTKGNAPGTSLDENDKPKPGEEPINEID 427
+ GN + + GE E++
Sbjct: 118 DVIIMLVGNKTDLADKRQVSIEEGERKAKELN 149
>sp|P06869|UROK_MOUSE Urokinase-type plasminogen activator precursor (uPA) (U-plasminogen
activator) [Contains: Urokinase-type plasminogen
activator long chain A; Urokinase-type plasminogen
activator short chain A; Urokinase-type plasminogen
activator chain B]
Length = 433
Score = 30.4 bits (67), Expect = 6.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 605 NAKFCCFTKFSRRIRACCCPIKFDLHKCAIRSS 703
N C K+ RIR C CP KF C I +S
Sbjct: 36 NGGVCVSYKYFSRIRRCSCPRKFQGEHCEIDAS 68
>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1
Length = 205
Score = 30.0 bits (66), Expect = 8.6
Identities = 18/92 (19%), Positives = 42/92 (45%)
Frame = -2
Query: 702 EERIAHLCRSNLIGQQQARILLENFVKQQNFAFVSLEILK*NPFLRKTRYYDNAAHKHSG 523
E+R L + GQ++ R L+ ++++ + A V +I N F + T++ D+ ++
Sbjct: 56 EDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGC 115
Query: 522 TSQLSTKGNAPGTSLDENDKPKPGEEPINEID 427
+ GN + + GE+ +++
Sbjct: 116 DVIIVLVGNKTDLADKRQVSTEDGEKKARDLN 147
>sp|P04934|MSP1_PLAFC Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P195)
Length = 1726
Score = 30.0 bits (66), Expect = 8.6
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -2
Query: 510 STKGNAPGTSLDENDKPKPGEEPINEIDKAALKHDIAYRSTD 385
+ GN P T LD+N K + EE I EI K +K +I TD
Sbjct: 358 ANSGNTPNTLLDKNKKIEEHEEKIKEIAK-TIKFNIDSLFTD 398
>sp|Q8MCS1|MATK_LATAP Maturase K (Intron maturase)
Length = 506
Score = 30.0 bits (66), Expect = 8.6
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 172 RLFLYSLCN*FIGENFTIFSEYFIIYSCSNKN-FKFHCRFY*CSLYFFFIV*RWQT 336
RLFLY CN +F + +S SN F F FY C +FF+ R Q+
Sbjct: 178 RLFLYHFCN---RNSFITTKKSISTFSKSNPRLFLFLYNFYVCEYEYFFVFLRTQS 230
>sp|P50495|MSP1_PLAFP Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (GP195)
Length = 1726
Score = 30.0 bits (66), Expect = 8.6
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = -2
Query: 510 STKGNAPGTSLDENDKPKPGEEPINEIDKAALKHDIAYRSTD 385
+ GN P T LD+N K + EE I EI K +K +I TD
Sbjct: 358 ANSGNTPNTLLDKNKKIEEHEEKIKEIAK-TIKFNIDSLFTD 398
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,964,175
Number of Sequences: 369166
Number of extensions: 1558429
Number of successful extensions: 4027
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4016
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)