Planaria EST Database


DrC_02700

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02700
         (454 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60013|AAT_STRVG  Aspartate aminotransferase (Transaminas...    31   1.4  
sp|Q4HTS9|ISN1_GIBZE  IMP-specific 5'-nucleotidase 1               30   2.5  
sp|Q58901|YF06_METJA  Hypothetical protein MJ1506                  29   5.5  
sp|P59206|LYTB_STRR6  Putative endo-beta-N-acetylglucosamini...    28   9.4  
sp|P59205|LYTB_STRPN  Putative endo-beta-N-acetylglucosamini...    28   9.4  
sp|Q7SDZ1|ISN1_NEUCR  IMP-specific 5'-nucleotidase 1               28   9.4  
>sp|Q60013|AAT_STRVG Aspartate aminotransferase (Transaminase A) (ASPAT)
          Length = 397

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +2

Query: 143 GYWLT--EIYYHQVYGKHDI-AMRMIDTFIKDMAQISNYNMRRFALRTTRGFFKIEDQDI 313
           G W+   EIY H VYG+    ++ ++   ++D   I N   + +A+   R  + I  QD+
Sbjct: 195 GLWVLTDEIYEHLVYGEAKFTSLPVLVPALRDKCIIVNGVAKTYAMTGWRVGWVIAPQDV 254

Query: 314 LNKMDNTEQNVDRKISN 364
           +    N + +    +SN
Sbjct: 255 IKAATNLQSHATSNVSN 271
>sp|Q4HTS9|ISN1_GIBZE IMP-specific 5'-nucleotidase 1
          Length = 430

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +2

Query: 59  NIEKTANCIIRTRPLVQSDMKDGYFKSSGYWLTEIYYHQVYGKHDIAMRMID 214
           N+E T+  I R   L++ ++K G   ++GY   + YY +++G  D      D
Sbjct: 146 NLEPTSPVIPRLLDLLRKNIKIGIVTAAGYTSADRYYERLHGLLDAIAESTD 197
>sp|Q58901|YF06_METJA Hypothetical protein MJ1506
          Length = 437

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 113 DMKDGYFKSSGYWLTEIYYHQVYGKHDIAMRMIDTFI 223
           D +DG   S  Y +T+IYY  VYG     + + DT I
Sbjct: 161 DKEDGKETSHHYEITKIYYLHVYGIASFEINIDDTSI 197
>sp|P59206|LYTB_STRR6 Putative endo-beta-N-acetylglucosaminidase precursor (Murein
           hydrolase)
          Length = 702

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 119 KDGYFKSSGYWLTEIYYHQVY 181
           KD YFKS GY LT  + +Q Y
Sbjct: 156 KDYYFKSGGYLLTSQWINQAY 176
>sp|P59205|LYTB_STRPN Putative endo-beta-N-acetylglucosaminidase precursor (Murein
           hydrolase)
          Length = 658

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 119 KDGYFKSSGYWLTEIYYHQVY 181
           KD YFKS GY LT  + +Q Y
Sbjct: 156 KDYYFKSGGYLLTSQWINQAY 176
>sp|Q7SDZ1|ISN1_NEUCR IMP-specific 5'-nucleotidase 1
          Length = 431

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 59  NIEKTANCIIRTRPLVQSDMKDGYFKSSGYWLTEIYYHQVYGKHDIAMRMID 214
           ++E T+  I R   L++ ++K G   ++GY   + YY +++G  D      D
Sbjct: 168 SLEPTSPVIPRLLDLLRKNVKIGIVTAAGYTTADRYYSRLHGLLDAMANSAD 219
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,167,968
Number of Sequences: 369166
Number of extensions: 846623
Number of successful extensions: 1911
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1910
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)