Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02700
(454 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60013|AAT_STRVG Aspartate aminotransferase (Transaminas... 31 1.4
sp|Q4HTS9|ISN1_GIBZE IMP-specific 5'-nucleotidase 1 30 2.5
sp|Q58901|YF06_METJA Hypothetical protein MJ1506 29 5.5
sp|P59206|LYTB_STRR6 Putative endo-beta-N-acetylglucosamini... 28 9.4
sp|P59205|LYTB_STRPN Putative endo-beta-N-acetylglucosamini... 28 9.4
sp|Q7SDZ1|ISN1_NEUCR IMP-specific 5'-nucleotidase 1 28 9.4
>sp|Q60013|AAT_STRVG Aspartate aminotransferase (Transaminase A) (ASPAT)
Length = 397
Score = 30.8 bits (68), Expect = 1.4
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 143 GYWLT--EIYYHQVYGKHDI-AMRMIDTFIKDMAQISNYNMRRFALRTTRGFFKIEDQDI 313
G W+ EIY H VYG+ ++ ++ ++D I N + +A+ R + I QD+
Sbjct: 195 GLWVLTDEIYEHLVYGEAKFTSLPVLVPALRDKCIIVNGVAKTYAMTGWRVGWVIAPQDV 254
Query: 314 LNKMDNTEQNVDRKISN 364
+ N + + +SN
Sbjct: 255 IKAATNLQSHATSNVSN 271
>sp|Q4HTS9|ISN1_GIBZE IMP-specific 5'-nucleotidase 1
Length = 430
Score = 30.0 bits (66), Expect = 2.5
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 59 NIEKTANCIIRTRPLVQSDMKDGYFKSSGYWLTEIYYHQVYGKHDIAMRMID 214
N+E T+ I R L++ ++K G ++GY + YY +++G D D
Sbjct: 146 NLEPTSPVIPRLLDLLRKNIKIGIVTAAGYTSADRYYERLHGLLDAIAESTD 197
>sp|Q58901|YF06_METJA Hypothetical protein MJ1506
Length = 437
Score = 28.9 bits (63), Expect = 5.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 113 DMKDGYFKSSGYWLTEIYYHQVYGKHDIAMRMIDTFI 223
D +DG S Y +T+IYY VYG + + DT I
Sbjct: 161 DKEDGKETSHHYEITKIYYLHVYGIASFEINIDDTSI 197
>sp|P59206|LYTB_STRR6 Putative endo-beta-N-acetylglucosaminidase precursor (Murein
hydrolase)
Length = 702
Score = 28.1 bits (61), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 119 KDGYFKSSGYWLTEIYYHQVY 181
KD YFKS GY LT + +Q Y
Sbjct: 156 KDYYFKSGGYLLTSQWINQAY 176
>sp|P59205|LYTB_STRPN Putative endo-beta-N-acetylglucosaminidase precursor (Murein
hydrolase)
Length = 658
Score = 28.1 bits (61), Expect = 9.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 119 KDGYFKSSGYWLTEIYYHQVY 181
KD YFKS GY LT + +Q Y
Sbjct: 156 KDYYFKSGGYLLTSQWINQAY 176
>sp|Q7SDZ1|ISN1_NEUCR IMP-specific 5'-nucleotidase 1
Length = 431
Score = 28.1 bits (61), Expect = 9.4
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 59 NIEKTANCIIRTRPLVQSDMKDGYFKSSGYWLTEIYYHQVYGKHDIAMRMID 214
++E T+ I R L++ ++K G ++GY + YY +++G D D
Sbjct: 168 SLEPTSPVIPRLLDLLRKNVKIGIVTAAGYTTADRYYSRLHGLLDAMANSAD 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,167,968
Number of Sequences: 369166
Number of extensions: 846623
Number of successful extensions: 1911
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1910
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)