Planaria EST Database


DrC_02696

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02696
         (832 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q14108|SCRB2_HUMAN  Lysosome membrane protein II (LIMP II...   191   2e-48
sp|P27615|SCRB2_RAT  Lysosome membrane protein II (LIMP II) ...   184   2e-46
sp|O35114|SCRB2_MOUSE  Lysosome membrane protein II (LIMP II...   180   4e-45
sp|Q08857|CD36_MOUSE  Platelet glycoprotein IV (GPIV) (GPIII...   180   4e-45
sp|P97943|SCRB1_RAT  Scavenger receptor class B member 1 (SR...   177   4e-44
sp|P16671|CD36_HUMAN  Platelet glycoprotein IV (GPIV) (Glyco...   176   7e-44
sp|Q61009|SCRB1_MOUSE  Scavenger receptor class B member 1 (...   174   2e-43
sp|P70110|CD36_MESAU  Platelet glycoprotein IV (GPIV) (GPIII...   174   2e-43
sp|Q07969|CD36_RAT  Platelet glycoprotein IV (GPIV) (GPIIIB)...   174   3e-43
sp|Q60417|SCRB1_CRIGR  Scavenger receptor class B member 1 (...   171   2e-42
>sp|Q14108|SCRB2_HUMAN Lysosome membrane protein II (LIMP II) (Scavenger receptor class B
           member 2) (85 kDa lysosomal membrane sialoglycoprotein)
           (LGP85) (CD36 antigen-like 2)
          Length = 478

 Score =  191 bits (486), Expect = 2e-48
 Identities = 103/267 (38%), Positives = 155/267 (58%), Gaps = 4/267 (1%)
 Frame = +2

Query: 32  LFMKTSVKNITWGYLDPFLETNKEVLK-VNPYVGLFYGKNDTAGKMYTVDTGIKSLDNYL 208
           LF+  +V  + WGY D  L         ++PY GLFY KN T    Y   TG  S  N+ 
Sbjct: 167 LFVTHTVDELLWGYKDEILSLIHVFRPDISPYFGLFYEKNGTNDGDYVFLTGEDSYLNFT 226

Query: 209 KVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGSDV 388
           K+ +WNG   L  W     NMINGTDG  + P + K   LYVF SD CR++Y  +   + 
Sbjct: 227 KIVEWNGKTSLDWWITDKCNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYES 286

Query: 389 VKGIPSMNFAAPDSLFANSTVNPSNIGFCL-DGHCMGAGVLNLRKCGSGTAPVVMSQPHF 565
           V+G+P+  +  P  + AN++    N GFC+ +G+C+G+GVLN+  C +G AP++MS PHF
Sbjct: 287 VQGLPAFRYKVPAEILANTS---DNAGFCIPEGNCLGSGVLNVSICKNG-APIIMSFPHF 342

Query: 566 YLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIEP-SSFLKMDDIL 739
           Y A + +  ++ G+ P+ +D +T + + P TG+ L+  K+ QINI ++    F++  DI 
Sbjct: 343 YQADERFVSAIEGMHPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVETGDIR 402

Query: 740 PVILPVMWLNESALISDASARRLKKAL 820
            ++ PVM+LNES  I   +A RLK  +
Sbjct: 403 TMVFPVMYLNESVHIDKETASRLKSMI 429
>sp|P27615|SCRB2_RAT Lysosome membrane protein II (LIMP II) (Scavenger receptor class B
           member 2) (85 kDa lysosomal membrane sialoglycoprotein)
           (LGP85) (CD36 antigen-like 2)
          Length = 478

 Score =  184 bits (468), Expect = 2e-46
 Identities = 99/268 (36%), Positives = 157/268 (58%), Gaps = 5/268 (1%)
 Frame = +2

Query: 32  LFMKTSVKNITWGYLDPFLETNKEVLK--VNPYVGLFYGKNDTAGKMYTVDTGIKSLDNY 205
           LF+  +V  + WGY D  L     + +  V+P  GLFY +N T    Y   TG  +  N+
Sbjct: 167 LFVTHTVHELLWGYKDEVLSL-VHIFRPDVSPNFGLFYERNGTNDGEYVFLTGEDNYLNF 225

Query: 206 LKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGSD 385
            K+ +WNG   L  W     NMINGTDG  + P ++K   LY+F SD CR++Y  +   +
Sbjct: 226 TKIVEWNGKTSLDWWTTDTCNMINGTDGDSFHPLISKDETLYIFPSDFCRSVYITFSSFE 285

Query: 386 VVKGIPSMNFAAPDSLFANSTVNPSNIGFCL-DGHCMGAGVLNLRKCGSGTAPVVMSQPH 562
            V+G+P+  +  P  + ANS+    N GFC+ +G+CM AGVLN+  C +G AP++MS PH
Sbjct: 286 NVEGLPAFRYKVPAEILANSS---ENAGFCIPEGNCMDAGVLNVSICKNG-APIIMSFPH 341

Query: 563 FYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIEP-SSFLKMDDI 736
           FY A + +  ++ G+RP+ ++ ++ + + P TG+ L+  K+ QIN  ++    F++  +I
Sbjct: 342 FYQADEKFVSAIKGMRPNKEEHESFVDINPLTGIILRGAKRFQINTYVKKLDDFVETGNI 401

Query: 737 LPVILPVMWLNESALISDASARRLKKAL 820
             ++ PVM+LNES LI   +A +LK  +
Sbjct: 402 RTMVFPVMYLNESVLIDKETASQLKSVI 429
>sp|O35114|SCRB2_MOUSE Lysosome membrane protein II (LIMP II) (Scavenger receptor class B
           member 2) (85 kDa lysosomal membrane sialoglycoprotein)
           (LGP85)
          Length = 478

 Score =  180 bits (457), Expect = 4e-45
 Identities = 97/268 (36%), Positives = 156/268 (58%), Gaps = 5/268 (1%)
 Frame = +2

Query: 32  LFMKTSVKNITWGYLDPFLETNKEVLK--VNPYVGLFYGKNDTAGKMYTVDTGIKSLDNY 205
           LF+  +V  + WGY D  L     + K  V+P  GLFY +N T    Y   TG  +  N+
Sbjct: 167 LFVIHTVHELLWGYKDEILSL-VHIFKPDVSPNFGLFYERNGTNDGEYVFLTGEDNYLNF 225

Query: 206 LKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGSD 385
            K+ +WNG   L  W     NMINGTDG  + P ++K   LY+F SD+CR+++  +   +
Sbjct: 226 SKIVEWNGKTSLDWWTTDTCNMINGTDGDSFHPLISKDEVLYLFPSDLCRSVHITFSSFE 285

Query: 386 VVKGIPSMNFAAPDSLFANSTVNPSNIGFCL-DGHCMGAGVLNLRKCGSGTAPVVMSQPH 562
            V+G+P+  +  P  + AN++    N GFC+ +G+CM +GVLN+  C +G AP++MS PH
Sbjct: 286 NVEGLPAFRYKVPAEILANTS---ENAGFCIPEGNCMDSGVLNISICKNG-APIIMSFPH 341

Query: 563 FYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIEP-SSFLKMDDI 736
           FY A + +  ++ G+ P+ ++ ++ + + P TG+ L+  K+ QIN  +     F++  DI
Sbjct: 342 FYQADEKFVSAIKGMHPNKEEHESFVDINPLTGIILRGAKRFQINTYVRKLDDFVETGDI 401

Query: 737 LPVILPVMWLNESALISDASARRLKKAL 820
             ++ PVM+LNES LI   +A +LK  +
Sbjct: 402 RTMVFPVMYLNESVLIDKETANQLKSVI 429
>sp|Q08857|CD36_MOUSE Platelet glycoprotein IV (GPIV) (GPIIIB) (CD36 antigen) (PAS IV)
           (PAS-4 protein)
          Length = 472

 Score =  180 bits (457), Expect = 4e-45
 Identities = 103/277 (37%), Positives = 149/277 (53%), Gaps = 7/277 (2%)
 Frame = +2

Query: 2   NSVNDIENYGLFMKTSVKNITWGYLDPFLETNKEVLKVNPYVGLFYGKNDTAGKMYTVDT 181
           NS+       +F   S+K + WGY DPFL        ++  VG+FY  NDT   +Y V  
Sbjct: 159 NSLIKKSKSSMFQTRSLKELLWGYKDPFLSLVP--YPISTTVGVFYPYNDTVDGVYKVFN 216

Query: 182 GIKSLDNYLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTI 361
           G  ++     +  + G   L+ W   Y +MINGTD + + PF+ KS  L  F SDICR+I
Sbjct: 217 GKDNISKVAIIESYKGKRNLSYW-PSYCDMINGTDAASFPPFVEKSRTLRFFSSDICRSI 275

Query: 362 YGIYVGSDVVKGIPSMNFAAPDSLFANSTVNPSNIGFC----LDGHCMGAGVLNLRKCGS 529
           Y ++     +KGIP   F  P + FA+   NP N  FC    +  +C   GVL++ KC  
Sbjct: 276 YAVFGSEIDLKGIPVYRFVLPANAFASPLQNPDNHCFCTEKVISNNCTSYGVLDIGKCKE 335

Query: 530 GTAPVVMSQPHFYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIE 706
           G  PV +S PHF  A+ D  + + GL P+ D+ +T L +EP TG  LQ  K+LQ+NI ++
Sbjct: 336 G-KPVYISLPHFLHASPDVSEPIEGLHPNEDEHRTYLDVEPITGFTLQFAKRLQVNILVK 394

Query: 707 PSSFLKMDDIL--PVILPVMWLNESALISDASARRLK 811
           P+  ++    L  P I+P++WLNE+  I D  A   K
Sbjct: 395 PARKIEALKNLKRPYIVPILWLNETGTIGDEKAEMFK 431
>sp|P97943|SCRB1_RAT Scavenger receptor class B member 1 (SRB1) (SR-BI)
          Length = 509

 Score =  177 bits (448), Expect = 4e-44
 Identities = 95/256 (37%), Positives = 146/256 (57%), Gaps = 6/256 (2%)
 Frame = +2

Query: 35  FMKTSVKNITWGYLDPFLETNK----EVLKVNPYVGLFYGKNDTAGKMYTVDTGIKSLDN 202
           FM  +V  I WGY DPF+        ++  +    GLF G ND++  ++TV TG+++   
Sbjct: 171 FMNRTVGEILWGYEDPFVNFLSKYFPDMFPIKGKFGLFVGMNDSSSGVFTVFTGVQNFSK 230

Query: 203 YLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGS 382
              V KWNG +++  W+ +  NMINGT G M+ PF+   S L  F  + CR++   Y  S
Sbjct: 231 IHLVDKWNGLSEVNYWHSEQCNMINGTAGQMWAPFMTPESSLEFFSPEACRSMKLTYQES 290

Query: 383 DVVKGIPSMNFAAPDSLFANSTVNPSNIGFCLDGHCMGAGVLNLRKCGSGTAPVVMSQPH 562
            V +GIP+  F APD+LFAN +V P N GFC    C  +G+ N+  C  G AP+ +SQPH
Sbjct: 291 RVFEGIPTYRFTAPDTLFANGSVYPPNEGFC---PCRESGIQNVSTCRFG-APLFLSQPH 346

Query: 563 FYLAADDYKDSVIGLRPSDDLKTL-LKLEPNTGLPLQLQKKLQINIAIEPSSFL-KMDDI 736
           FY A     ++V+GL P     +L L + P TG+P+    K+Q+++ I+    + +   I
Sbjct: 347 FYNADPVLSEAVLGLNPDPKEHSLFLDIHPVTGIPMNCSVKMQLSLYIKSVKGVGQTGKI 406

Query: 737 LPVILPVMWLNESALI 784
            PV+LP++W  +S ++
Sbjct: 407 EPVVLPLLWFEQSGMM 422
>sp|P16671|CD36_HUMAN Platelet glycoprotein IV (GPIV) (Glycoprotein IIIb) (GPIIIB)
           (Leukocyte differentiation antigen CD36) (CD36 antigen)
           (PAS IV) (PAS-4 protein) (Platelet collagen receptor)
           (Fatty acid translocase) (FAT) (Thrombospondin receptor)
          Length = 472

 Score =  176 bits (446), Expect = 7e-44
 Identities = 99/277 (35%), Positives = 150/277 (54%), Gaps = 7/277 (2%)
 Frame = +2

Query: 2   NSVNDIENYGLFMKTSVKNITWGYLDPFLETNKEVLKVNPYVGLFYGKNDTAGKMYTVDT 181
           NS+ +     +F   +++ + WGY DPFL        V   VGLFY  N+TA  +Y V  
Sbjct: 159 NSLINKSKSSMFQVRTLRELLWGYRDPFLSLVP--YPVTTTVGLFYPYNNTADGVYKVFN 216

Query: 182 GIKSLDNYLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTI 361
           G  ++     +  + G   L+ W + + +MINGTD + + PF+ KS  L  F SDICR+I
Sbjct: 217 GKDNISKVAIIDTYKGKRNLSYW-ESHCDMINGTDAASFPPFVEKSQVLQFFSSDICRSI 275

Query: 362 YGIYVGSDVVKGIPSMNFAAPDSLFANSTVNPSNIGFC----LDGHCMGAGVLNLRKCGS 529
           Y ++     +KGIP   F  P   FA+   NP N  FC    +  +C   GVL++ KC  
Sbjct: 276 YAVFESDVNLKGIPVYRFVLPSKAFASPVENPDNYCFCTEKIISKNCTSYGVLDISKCKE 335

Query: 530 GTAPVVMSQPHFYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIE 706
           G  PV +S PHF  A+ D  + + GL P+ ++ +T L +EP TG  LQ  K+LQ+N+ ++
Sbjct: 336 G-RPVYISLPHFLYASPDVSEPIDGLNPNEEEHRTYLDIEPITGFTLQFAKRLQVNLLVK 394

Query: 707 PSSFLKMDDILP--VILPVMWLNESALISDASARRLK 811
           PS  +++   L    I+P++WLNE+  I D  A   +
Sbjct: 395 PSEKIQVLKNLKRNYIVPILWLNETGTIGDEKANMFR 431
>sp|Q61009|SCRB1_MOUSE Scavenger receptor class B member 1 (SRB1) (SR-BI)
          Length = 509

 Score =  174 bits (442), Expect = 2e-43
 Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 6/253 (2%)
 Frame = +2

Query: 35  FMKTSVKNITWGYLDPFLETNK----EVLKVNPYVGLFYGKNDTAGKMYTVDTGIKSLDN 202
           FM  +V  I WGY DPF+        ++L +    GLF G N++   ++TV TG+++   
Sbjct: 171 FMNRTVGEILWGYDDPFVHFLNTYLPDMLPIKGKFGLFVGMNNSNSGVFTVFTGVQNFSR 230

Query: 203 YLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGS 382
              V KWNG +K+  W+ +  NMINGT G M+ PF+   S L  F  + CR++   Y  S
Sbjct: 231 IHLVDKWNGLSKIDYWHSEQCNMINGTSGQMWAPFMTPESSLEFFSPEACRSMKLTYNES 290

Query: 383 DVVKGIPSMNFAAPDSLFANSTVNPSNIGFCLDGHCMGAGVLNLRKCGSGTAPVVMSQPH 562
            V +GIP+  F APD+LFAN +V P N GFC    C  +G+ N+  C  G AP+ +S PH
Sbjct: 291 RVFEGIPTYRFTAPDTLFANGSVYPPNEGFC---PCRESGIQNVSTCRFG-APLFLSHPH 346

Query: 563 FYLAADDYKDSVIGLRPSDDLKTL-LKLEPNTGLPLQLQKKLQINIAIEPSSFL-KMDDI 736
           FY A     ++V+GL P+    +L L + P TG+P+    K+Q+++ I+    + +   I
Sbjct: 347 FYNADPVLSEAVLGLNPNPKEHSLFLDIHPVTGIPMNCSVKMQLSLYIKSVKGIGQTGKI 406

Query: 737 LPVILPVMWLNES 775
            PV+LP++W  +S
Sbjct: 407 EPVVLPLLWFEQS 419
>sp|P70110|CD36_MESAU Platelet glycoprotein IV (GPIV) (GPIIIB) (CD36 antigen) (PAS IV)
           (PAS-4 protein)
          Length = 472

 Score =  174 bits (442), Expect = 2e-43
 Identities = 102/278 (36%), Positives = 152/278 (54%), Gaps = 8/278 (2%)
 Frame = +2

Query: 2   NSVNDIENYGLFMKTSVKNITWGYLDPFLETNKEVLKVNPYVGLFYGKNDTAGKMYTVDT 181
           NS+       +F   +++ + WGY DPFL      +     VG+FY  NDTA  +Y V  
Sbjct: 159 NSLIKKSKSSMFQTRTLRELLWGYKDPFLSLVPYPIPTT--VGVFYPYNDTADGVYKVFN 216

Query: 182 GIKSLDNYLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTI 361
           G   ++    +  + G   L+ W + Y +MINGTD + + PF+ KS  L  F SDICR+I
Sbjct: 217 GKDDINKVAIIDSYKGKRNLSYW-ESYCDMINGTDAASFPPFVEKSRVLRFFSSDICRSI 275

Query: 362 YGIYVGSDV-VKGIPSMNFAAPDSLFANSTVNPSNIGFC----LDGHCMGAGVLNLRKCG 526
           Y ++ GSD+ +KGIP   F  P   FA+   NP N  FC    +  +C   GVL++ KC 
Sbjct: 276 YAVF-GSDIELKGIPVYRFILPAKAFASPVQNPDNHCFCTEKVISNNCTSYGVLDISKCK 334

Query: 527 SGTAPVVMSQPHFYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAI 703
            G  PV +S PHF  A+ D  + + GL P+ ++ +T L +EP TG  LQ  K+LQ+NI +
Sbjct: 335 QG-RPVYISLPHFLHASPDISEPIEGLNPNEEEHRTYLDVEPITGFTLQFAKRLQVNILV 393

Query: 704 EPSSFLKMDDILP--VILPVMWLNESALISDASARRLK 811
           +P+  ++    L    I+P++WLNE+  I D  A   +
Sbjct: 394 KPARKIEALKNLKRNYIVPILWLNETGTIGDEKAEMFR 431
>sp|Q07969|CD36_RAT Platelet glycoprotein IV (GPIV) (GPIIIB) (CD36 antigen) (PAS IV)
           (PAS-4 protein) (Fatty acid transport protein) (Fatty
           acid translocase) (Adipocyte membrane protein)
          Length = 472

 Score =  174 bits (441), Expect = 3e-43
 Identities = 100/277 (36%), Positives = 147/277 (53%), Gaps = 7/277 (2%)
 Frame = +2

Query: 2   NSVNDIENYGLFMKTSVKNITWGYLDPFLETNKEVLKVNPYVGLFYGKNDTAGKMYTVDT 181
           NS+       +F   S+K + WGY DPFL        ++  VG+FY  N+T   +Y V  
Sbjct: 159 NSLIKKSKSSMFQTRSLKELLWGYKDPFLSLVP--YPISTTVGVFYPYNNTVDGVYKVSN 216

Query: 182 GIKSLDNYLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTI 361
           G  ++     +  + G   L+ W + Y +MINGTD + + P   KS  L  F SDICR+I
Sbjct: 217 GKDNISKVAIIDTYKGKRNLSYW-ESYCDMINGTDAASFPPLGEKSRTLRFFSSDICRSI 275

Query: 362 YGIYVGSDVVKGIPSMNFAAPDSLFANSTVNPSNIGFC----LDGHCMGAGVLNLRKCGS 529
           Y ++     +KGIP   F  P + FA+   NP N  FC    +  +C   GVL++ KC  
Sbjct: 276 YAVFESEVNLKGIPVYRFVLPANAFASPLQNPDNHCFCTEKVISNNCTSYGVLDIGKCKE 335

Query: 530 GTAPVVMSQPHFYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIE 706
           G  PV  S PHF  A+ D  + + GL P+ D+ +T L +EP TG  LQ  K+LQ+NI ++
Sbjct: 336 G-KPVYNSLPHFLHASPDVSEPIEGLNPTEDEHRTYLDVEPITGFTLQFSKRLQVNILVK 394

Query: 707 PSSFLKMDDIL--PVILPVMWLNESALISDASARRLK 811
           P+  ++    L  P I+P++WLNE+  I D  A   +
Sbjct: 395 PARKIEALKNLKRPYIVPILWLNETGTIGDEKAEMFR 431
>sp|Q60417|SCRB1_CRIGR Scavenger receptor class B member 1 (SRB1) (SR-BI) (HaSR-BI)
          Length = 509

 Score =  171 bits (433), Expect = 2e-42
 Identities = 95/253 (37%), Positives = 143/253 (56%), Gaps = 6/253 (2%)
 Frame = +2

Query: 35  FMKTSVKNITWGYLDPFLE-TNK---EVLKVNPYVGLFYGKNDTAGKMYTVDTGIKSLDN 202
           FM  +V  I WGY DPF+   NK   ++  +    GLF   N++   ++TV TG+++   
Sbjct: 171 FMNRTVGEILWGYEDPFVNFINKYLPDMFPIKGKFGLFVEMNNSDSGLFTVFTGVQNFSK 230

Query: 203 YLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGS 382
              V +WNG +K+  W+ +  NMINGT G M+ PF+   S L  F  + CR++   Y  S
Sbjct: 231 IHLVDRWNGLSKVNYWHSEQCNMINGTSGQMWAPFMTPQSSLEFFSPEACRSMKLTYHDS 290

Query: 383 DVVKGIPSMNFAAPDSLFANSTVNPSNIGFCLDGHCMGAGVLNLRKCGSGTAPVVMSQPH 562
            V +GIP+  F AP +LFAN +V P N GFC    C+ +G+ N+  C  G AP+ +S PH
Sbjct: 291 GVFEGIPTYRFTAPKTLFANGSVYPPNEGFC---PCLESGIQNVSTCRFG-APLFLSHPH 346

Query: 563 FYLAADDYKDSVIGLRPSDDLKTL-LKLEPNTGLPLQLQKKLQINIAIEPSSFL-KMDDI 736
           FY A     ++V+GL P     +L L + P TG+P+    KLQI++ I+    + +   I
Sbjct: 347 FYNADPVLSEAVLGLNPDpreHSLFLDIHPVTGIPMNCSVKLQISLYIKAVKGIGQTGKI 406

Query: 737 LPVILPVMWLNES 775
            PV+LP++W  +S
Sbjct: 407 EPVVLPLLWFEQS 419
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,698,151
Number of Sequences: 369166
Number of extensions: 2054687
Number of successful extensions: 5090
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5024
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)