Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02696
(832 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14108|SCRB2_HUMAN Lysosome membrane protein II (LIMP II... 191 2e-48
sp|P27615|SCRB2_RAT Lysosome membrane protein II (LIMP II) ... 184 2e-46
sp|O35114|SCRB2_MOUSE Lysosome membrane protein II (LIMP II... 180 4e-45
sp|Q08857|CD36_MOUSE Platelet glycoprotein IV (GPIV) (GPIII... 180 4e-45
sp|P97943|SCRB1_RAT Scavenger receptor class B member 1 (SR... 177 4e-44
sp|P16671|CD36_HUMAN Platelet glycoprotein IV (GPIV) (Glyco... 176 7e-44
sp|Q61009|SCRB1_MOUSE Scavenger receptor class B member 1 (... 174 2e-43
sp|P70110|CD36_MESAU Platelet glycoprotein IV (GPIV) (GPIII... 174 2e-43
sp|Q07969|CD36_RAT Platelet glycoprotein IV (GPIV) (GPIIIB)... 174 3e-43
sp|Q60417|SCRB1_CRIGR Scavenger receptor class B member 1 (... 171 2e-42
>sp|Q14108|SCRB2_HUMAN Lysosome membrane protein II (LIMP II) (Scavenger receptor class B
member 2) (85 kDa lysosomal membrane sialoglycoprotein)
(LGP85) (CD36 antigen-like 2)
Length = 478
Score = 191 bits (486), Expect = 2e-48
Identities = 103/267 (38%), Positives = 155/267 (58%), Gaps = 4/267 (1%)
Frame = +2
Query: 32 LFMKTSVKNITWGYLDPFLETNKEVLK-VNPYVGLFYGKNDTAGKMYTVDTGIKSLDNYL 208
LF+ +V + WGY D L ++PY GLFY KN T Y TG S N+
Sbjct: 167 LFVTHTVDELLWGYKDEILSLIHVFRPDISPYFGLFYEKNGTNDGDYVFLTGEDSYLNFT 226
Query: 209 KVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGSDV 388
K+ +WNG L W NMINGTDG + P + K LYVF SD CR++Y + +
Sbjct: 227 KIVEWNGKTSLDWWITDKCNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYES 286
Query: 389 VKGIPSMNFAAPDSLFANSTVNPSNIGFCL-DGHCMGAGVLNLRKCGSGTAPVVMSQPHF 565
V+G+P+ + P + AN++ N GFC+ +G+C+G+GVLN+ C +G AP++MS PHF
Sbjct: 287 VQGLPAFRYKVPAEILANTS---DNAGFCIPEGNCLGSGVLNVSICKNG-APIIMSFPHF 342
Query: 566 YLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIEP-SSFLKMDDIL 739
Y A + + ++ G+ P+ +D +T + + P TG+ L+ K+ QINI ++ F++ DI
Sbjct: 343 YQADERFVSAIEGMHPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVETGDIR 402
Query: 740 PVILPVMWLNESALISDASARRLKKAL 820
++ PVM+LNES I +A RLK +
Sbjct: 403 TMVFPVMYLNESVHIDKETASRLKSMI 429
>sp|P27615|SCRB2_RAT Lysosome membrane protein II (LIMP II) (Scavenger receptor class B
member 2) (85 kDa lysosomal membrane sialoglycoprotein)
(LGP85) (CD36 antigen-like 2)
Length = 478
Score = 184 bits (468), Expect = 2e-46
Identities = 99/268 (36%), Positives = 157/268 (58%), Gaps = 5/268 (1%)
Frame = +2
Query: 32 LFMKTSVKNITWGYLDPFLETNKEVLK--VNPYVGLFYGKNDTAGKMYTVDTGIKSLDNY 205
LF+ +V + WGY D L + + V+P GLFY +N T Y TG + N+
Sbjct: 167 LFVTHTVHELLWGYKDEVLSL-VHIFRPDVSPNFGLFYERNGTNDGEYVFLTGEDNYLNF 225
Query: 206 LKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGSD 385
K+ +WNG L W NMINGTDG + P ++K LY+F SD CR++Y + +
Sbjct: 226 TKIVEWNGKTSLDWWTTDTCNMINGTDGDSFHPLISKDETLYIFPSDFCRSVYITFSSFE 285
Query: 386 VVKGIPSMNFAAPDSLFANSTVNPSNIGFCL-DGHCMGAGVLNLRKCGSGTAPVVMSQPH 562
V+G+P+ + P + ANS+ N GFC+ +G+CM AGVLN+ C +G AP++MS PH
Sbjct: 286 NVEGLPAFRYKVPAEILANSS---ENAGFCIPEGNCMDAGVLNVSICKNG-APIIMSFPH 341
Query: 563 FYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIEP-SSFLKMDDI 736
FY A + + ++ G+RP+ ++ ++ + + P TG+ L+ K+ QIN ++ F++ +I
Sbjct: 342 FYQADEKFVSAIKGMRPNKEEHESFVDINPLTGIILRGAKRFQINTYVKKLDDFVETGNI 401
Query: 737 LPVILPVMWLNESALISDASARRLKKAL 820
++ PVM+LNES LI +A +LK +
Sbjct: 402 RTMVFPVMYLNESVLIDKETASQLKSVI 429
>sp|O35114|SCRB2_MOUSE Lysosome membrane protein II (LIMP II) (Scavenger receptor class B
member 2) (85 kDa lysosomal membrane sialoglycoprotein)
(LGP85)
Length = 478
Score = 180 bits (457), Expect = 4e-45
Identities = 97/268 (36%), Positives = 156/268 (58%), Gaps = 5/268 (1%)
Frame = +2
Query: 32 LFMKTSVKNITWGYLDPFLETNKEVLK--VNPYVGLFYGKNDTAGKMYTVDTGIKSLDNY 205
LF+ +V + WGY D L + K V+P GLFY +N T Y TG + N+
Sbjct: 167 LFVIHTVHELLWGYKDEILSL-VHIFKPDVSPNFGLFYERNGTNDGEYVFLTGEDNYLNF 225
Query: 206 LKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGSD 385
K+ +WNG L W NMINGTDG + P ++K LY+F SD+CR+++ + +
Sbjct: 226 SKIVEWNGKTSLDWWTTDTCNMINGTDGDSFHPLISKDEVLYLFPSDLCRSVHITFSSFE 285
Query: 386 VVKGIPSMNFAAPDSLFANSTVNPSNIGFCL-DGHCMGAGVLNLRKCGSGTAPVVMSQPH 562
V+G+P+ + P + AN++ N GFC+ +G+CM +GVLN+ C +G AP++MS PH
Sbjct: 286 NVEGLPAFRYKVPAEILANTS---ENAGFCIPEGNCMDSGVLNISICKNG-APIIMSFPH 341
Query: 563 FYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIEP-SSFLKMDDI 736
FY A + + ++ G+ P+ ++ ++ + + P TG+ L+ K+ QIN + F++ DI
Sbjct: 342 FYQADEKFVSAIKGMHPNKEEHESFVDINPLTGIILRGAKRFQINTYVRKLDDFVETGDI 401
Query: 737 LPVILPVMWLNESALISDASARRLKKAL 820
++ PVM+LNES LI +A +LK +
Sbjct: 402 RTMVFPVMYLNESVLIDKETANQLKSVI 429
>sp|Q08857|CD36_MOUSE Platelet glycoprotein IV (GPIV) (GPIIIB) (CD36 antigen) (PAS IV)
(PAS-4 protein)
Length = 472
Score = 180 bits (457), Expect = 4e-45
Identities = 103/277 (37%), Positives = 149/277 (53%), Gaps = 7/277 (2%)
Frame = +2
Query: 2 NSVNDIENYGLFMKTSVKNITWGYLDPFLETNKEVLKVNPYVGLFYGKNDTAGKMYTVDT 181
NS+ +F S+K + WGY DPFL ++ VG+FY NDT +Y V
Sbjct: 159 NSLIKKSKSSMFQTRSLKELLWGYKDPFLSLVP--YPISTTVGVFYPYNDTVDGVYKVFN 216
Query: 182 GIKSLDNYLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTI 361
G ++ + + G L+ W Y +MINGTD + + PF+ KS L F SDICR+I
Sbjct: 217 GKDNISKVAIIESYKGKRNLSYW-PSYCDMINGTDAASFPPFVEKSRTLRFFSSDICRSI 275
Query: 362 YGIYVGSDVVKGIPSMNFAAPDSLFANSTVNPSNIGFC----LDGHCMGAGVLNLRKCGS 529
Y ++ +KGIP F P + FA+ NP N FC + +C GVL++ KC
Sbjct: 276 YAVFGSEIDLKGIPVYRFVLPANAFASPLQNPDNHCFCTEKVISNNCTSYGVLDIGKCKE 335
Query: 530 GTAPVVMSQPHFYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIE 706
G PV +S PHF A+ D + + GL P+ D+ +T L +EP TG LQ K+LQ+NI ++
Sbjct: 336 G-KPVYISLPHFLHASPDVSEPIEGLHPNEDEHRTYLDVEPITGFTLQFAKRLQVNILVK 394
Query: 707 PSSFLKMDDIL--PVILPVMWLNESALISDASARRLK 811
P+ ++ L P I+P++WLNE+ I D A K
Sbjct: 395 PARKIEALKNLKRPYIVPILWLNETGTIGDEKAEMFK 431
>sp|P97943|SCRB1_RAT Scavenger receptor class B member 1 (SRB1) (SR-BI)
Length = 509
Score = 177 bits (448), Expect = 4e-44
Identities = 95/256 (37%), Positives = 146/256 (57%), Gaps = 6/256 (2%)
Frame = +2
Query: 35 FMKTSVKNITWGYLDPFLETNK----EVLKVNPYVGLFYGKNDTAGKMYTVDTGIKSLDN 202
FM +V I WGY DPF+ ++ + GLF G ND++ ++TV TG+++
Sbjct: 171 FMNRTVGEILWGYEDPFVNFLSKYFPDMFPIKGKFGLFVGMNDSSSGVFTVFTGVQNFSK 230
Query: 203 YLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGS 382
V KWNG +++ W+ + NMINGT G M+ PF+ S L F + CR++ Y S
Sbjct: 231 IHLVDKWNGLSEVNYWHSEQCNMINGTAGQMWAPFMTPESSLEFFSPEACRSMKLTYQES 290
Query: 383 DVVKGIPSMNFAAPDSLFANSTVNPSNIGFCLDGHCMGAGVLNLRKCGSGTAPVVMSQPH 562
V +GIP+ F APD+LFAN +V P N GFC C +G+ N+ C G AP+ +SQPH
Sbjct: 291 RVFEGIPTYRFTAPDTLFANGSVYPPNEGFC---PCRESGIQNVSTCRFG-APLFLSQPH 346
Query: 563 FYLAADDYKDSVIGLRPSDDLKTL-LKLEPNTGLPLQLQKKLQINIAIEPSSFL-KMDDI 736
FY A ++V+GL P +L L + P TG+P+ K+Q+++ I+ + + I
Sbjct: 347 FYNADPVLSEAVLGLNPDPKEHSLFLDIHPVTGIPMNCSVKMQLSLYIKSVKGVGQTGKI 406
Query: 737 LPVILPVMWLNESALI 784
PV+LP++W +S ++
Sbjct: 407 EPVVLPLLWFEQSGMM 422
>sp|P16671|CD36_HUMAN Platelet glycoprotein IV (GPIV) (Glycoprotein IIIb) (GPIIIB)
(Leukocyte differentiation antigen CD36) (CD36 antigen)
(PAS IV) (PAS-4 protein) (Platelet collagen receptor)
(Fatty acid translocase) (FAT) (Thrombospondin receptor)
Length = 472
Score = 176 bits (446), Expect = 7e-44
Identities = 99/277 (35%), Positives = 150/277 (54%), Gaps = 7/277 (2%)
Frame = +2
Query: 2 NSVNDIENYGLFMKTSVKNITWGYLDPFLETNKEVLKVNPYVGLFYGKNDTAGKMYTVDT 181
NS+ + +F +++ + WGY DPFL V VGLFY N+TA +Y V
Sbjct: 159 NSLINKSKSSMFQVRTLRELLWGYRDPFLSLVP--YPVTTTVGLFYPYNNTADGVYKVFN 216
Query: 182 GIKSLDNYLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTI 361
G ++ + + G L+ W + + +MINGTD + + PF+ KS L F SDICR+I
Sbjct: 217 GKDNISKVAIIDTYKGKRNLSYW-ESHCDMINGTDAASFPPFVEKSQVLQFFSSDICRSI 275
Query: 362 YGIYVGSDVVKGIPSMNFAAPDSLFANSTVNPSNIGFC----LDGHCMGAGVLNLRKCGS 529
Y ++ +KGIP F P FA+ NP N FC + +C GVL++ KC
Sbjct: 276 YAVFESDVNLKGIPVYRFVLPSKAFASPVENPDNYCFCTEKIISKNCTSYGVLDISKCKE 335
Query: 530 GTAPVVMSQPHFYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIE 706
G PV +S PHF A+ D + + GL P+ ++ +T L +EP TG LQ K+LQ+N+ ++
Sbjct: 336 G-RPVYISLPHFLYASPDVSEPIDGLNPNEEEHRTYLDIEPITGFTLQFAKRLQVNLLVK 394
Query: 707 PSSFLKMDDILP--VILPVMWLNESALISDASARRLK 811
PS +++ L I+P++WLNE+ I D A +
Sbjct: 395 PSEKIQVLKNLKRNYIVPILWLNETGTIGDEKANMFR 431
>sp|Q61009|SCRB1_MOUSE Scavenger receptor class B member 1 (SRB1) (SR-BI)
Length = 509
Score = 174 bits (442), Expect = 2e-43
Identities = 95/253 (37%), Positives = 144/253 (56%), Gaps = 6/253 (2%)
Frame = +2
Query: 35 FMKTSVKNITWGYLDPFLETNK----EVLKVNPYVGLFYGKNDTAGKMYTVDTGIKSLDN 202
FM +V I WGY DPF+ ++L + GLF G N++ ++TV TG+++
Sbjct: 171 FMNRTVGEILWGYDDPFVHFLNTYLPDMLPIKGKFGLFVGMNNSNSGVFTVFTGVQNFSR 230
Query: 203 YLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGS 382
V KWNG +K+ W+ + NMINGT G M+ PF+ S L F + CR++ Y S
Sbjct: 231 IHLVDKWNGLSKIDYWHSEQCNMINGTSGQMWAPFMTPESSLEFFSPEACRSMKLTYNES 290
Query: 383 DVVKGIPSMNFAAPDSLFANSTVNPSNIGFCLDGHCMGAGVLNLRKCGSGTAPVVMSQPH 562
V +GIP+ F APD+LFAN +V P N GFC C +G+ N+ C G AP+ +S PH
Sbjct: 291 RVFEGIPTYRFTAPDTLFANGSVYPPNEGFC---PCRESGIQNVSTCRFG-APLFLSHPH 346
Query: 563 FYLAADDYKDSVIGLRPSDDLKTL-LKLEPNTGLPLQLQKKLQINIAIEPSSFL-KMDDI 736
FY A ++V+GL P+ +L L + P TG+P+ K+Q+++ I+ + + I
Sbjct: 347 FYNADPVLSEAVLGLNPNPKEHSLFLDIHPVTGIPMNCSVKMQLSLYIKSVKGIGQTGKI 406
Query: 737 LPVILPVMWLNES 775
PV+LP++W +S
Sbjct: 407 EPVVLPLLWFEQS 419
>sp|P70110|CD36_MESAU Platelet glycoprotein IV (GPIV) (GPIIIB) (CD36 antigen) (PAS IV)
(PAS-4 protein)
Length = 472
Score = 174 bits (442), Expect = 2e-43
Identities = 102/278 (36%), Positives = 152/278 (54%), Gaps = 8/278 (2%)
Frame = +2
Query: 2 NSVNDIENYGLFMKTSVKNITWGYLDPFLETNKEVLKVNPYVGLFYGKNDTAGKMYTVDT 181
NS+ +F +++ + WGY DPFL + VG+FY NDTA +Y V
Sbjct: 159 NSLIKKSKSSMFQTRTLRELLWGYKDPFLSLVPYPIPTT--VGVFYPYNDTADGVYKVFN 216
Query: 182 GIKSLDNYLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTI 361
G ++ + + G L+ W + Y +MINGTD + + PF+ KS L F SDICR+I
Sbjct: 217 GKDDINKVAIIDSYKGKRNLSYW-ESYCDMINGTDAASFPPFVEKSRVLRFFSSDICRSI 275
Query: 362 YGIYVGSDV-VKGIPSMNFAAPDSLFANSTVNPSNIGFC----LDGHCMGAGVLNLRKCG 526
Y ++ GSD+ +KGIP F P FA+ NP N FC + +C GVL++ KC
Sbjct: 276 YAVF-GSDIELKGIPVYRFILPAKAFASPVQNPDNHCFCTEKVISNNCTSYGVLDISKCK 334
Query: 527 SGTAPVVMSQPHFYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAI 703
G PV +S PHF A+ D + + GL P+ ++ +T L +EP TG LQ K+LQ+NI +
Sbjct: 335 QG-RPVYISLPHFLHASPDISEPIEGLNPNEEEHRTYLDVEPITGFTLQFAKRLQVNILV 393
Query: 704 EPSSFLKMDDILP--VILPVMWLNESALISDASARRLK 811
+P+ ++ L I+P++WLNE+ I D A +
Sbjct: 394 KPARKIEALKNLKRNYIVPILWLNETGTIGDEKAEMFR 431
>sp|Q07969|CD36_RAT Platelet glycoprotein IV (GPIV) (GPIIIB) (CD36 antigen) (PAS IV)
(PAS-4 protein) (Fatty acid transport protein) (Fatty
acid translocase) (Adipocyte membrane protein)
Length = 472
Score = 174 bits (441), Expect = 3e-43
Identities = 100/277 (36%), Positives = 147/277 (53%), Gaps = 7/277 (2%)
Frame = +2
Query: 2 NSVNDIENYGLFMKTSVKNITWGYLDPFLETNKEVLKVNPYVGLFYGKNDTAGKMYTVDT 181
NS+ +F S+K + WGY DPFL ++ VG+FY N+T +Y V
Sbjct: 159 NSLIKKSKSSMFQTRSLKELLWGYKDPFLSLVP--YPISTTVGVFYPYNNTVDGVYKVSN 216
Query: 182 GIKSLDNYLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTI 361
G ++ + + G L+ W + Y +MINGTD + + P KS L F SDICR+I
Sbjct: 217 GKDNISKVAIIDTYKGKRNLSYW-ESYCDMINGTDAASFPPLGEKSRTLRFFSSDICRSI 275
Query: 362 YGIYVGSDVVKGIPSMNFAAPDSLFANSTVNPSNIGFC----LDGHCMGAGVLNLRKCGS 529
Y ++ +KGIP F P + FA+ NP N FC + +C GVL++ KC
Sbjct: 276 YAVFESEVNLKGIPVYRFVLPANAFASPLQNPDNHCFCTEKVISNNCTSYGVLDIGKCKE 335
Query: 530 GTAPVVMSQPHFYLAADDYKDSVIGLRPS-DDLKTLLKLEPNTGLPLQLQKKLQINIAIE 706
G PV S PHF A+ D + + GL P+ D+ +T L +EP TG LQ K+LQ+NI ++
Sbjct: 336 G-KPVYNSLPHFLHASPDVSEPIEGLNPTEDEHRTYLDVEPITGFTLQFSKRLQVNILVK 394
Query: 707 PSSFLKMDDIL--PVILPVMWLNESALISDASARRLK 811
P+ ++ L P I+P++WLNE+ I D A +
Sbjct: 395 PARKIEALKNLKRPYIVPILWLNETGTIGDEKAEMFR 431
>sp|Q60417|SCRB1_CRIGR Scavenger receptor class B member 1 (SRB1) (SR-BI) (HaSR-BI)
Length = 509
Score = 171 bits (433), Expect = 2e-42
Identities = 95/253 (37%), Positives = 143/253 (56%), Gaps = 6/253 (2%)
Frame = +2
Query: 35 FMKTSVKNITWGYLDPFLE-TNK---EVLKVNPYVGLFYGKNDTAGKMYTVDTGIKSLDN 202
FM +V I WGY DPF+ NK ++ + GLF N++ ++TV TG+++
Sbjct: 171 FMNRTVGEILWGYEDPFVNFINKYLPDMFPIKGKFGLFVEMNNSDSGLFTVFTGVQNFSK 230
Query: 203 YLKVYKWNGTNKLTMWNDQYANMINGTDGSMYGPFLNKSSRLYVFQSDICRTIYGIYVGS 382
V +WNG +K+ W+ + NMINGT G M+ PF+ S L F + CR++ Y S
Sbjct: 231 IHLVDRWNGLSKVNYWHSEQCNMINGTSGQMWAPFMTPQSSLEFFSPEACRSMKLTYHDS 290
Query: 383 DVVKGIPSMNFAAPDSLFANSTVNPSNIGFCLDGHCMGAGVLNLRKCGSGTAPVVMSQPH 562
V +GIP+ F AP +LFAN +V P N GFC C+ +G+ N+ C G AP+ +S PH
Sbjct: 291 GVFEGIPTYRFTAPKTLFANGSVYPPNEGFC---PCLESGIQNVSTCRFG-APLFLSHPH 346
Query: 563 FYLAADDYKDSVIGLRPSDDLKTL-LKLEPNTGLPLQLQKKLQINIAIEPSSFL-KMDDI 736
FY A ++V+GL P +L L + P TG+P+ KLQI++ I+ + + I
Sbjct: 347 FYNADPVLSEAVLGLNPDpreHSLFLDIHPVTGIPMNCSVKLQISLYIKAVKGIGQTGKI 406
Query: 737 LPVILPVMWLNES 775
PV+LP++W +S
Sbjct: 407 EPVVLPLLWFEQS 419
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,698,151
Number of Sequences: 369166
Number of extensions: 2054687
Number of successful extensions: 5090
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5024
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)