Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02682
(261 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZLA5|DDL_HELPJ D-alanine--D-alanine ligase (D-alanylal... 32 0.45
sp|P56191|DDL_HELPY D-alanine--D-alanine ligase (D-alanylal... 30 1.7
sp|Q5M5B9|SYT_STRT2 Threonyl-tRNA synthetase (Threonine--tR... 30 2.2
sp|P35177|SPT7_YEAST Transcriptional activator SPT7 28 4.9
>sp|Q9ZLA5|DDL_HELPJ D-alanine--D-alanine ligase (D-alanylalanine synthetase)
(D-Ala-D-Ala ligase)
Length = 347
Score = 32.0 bits (71), Expect = 0.45
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -2
Query: 245 YLVSFDNTNYF*IIIESNNQNFFFLQLDE*KIPLLV 138
Y + D +YF +I ESN + +F Q+ E K+P L+
Sbjct: 34 YFIFLDENHYFYLIEESNMHSKYFAQIKEKKLPPLI 69
>sp|P56191|DDL_HELPY D-alanine--D-alanine ligase (D-alanylalanine synthetase)
(D-Ala-D-Ala ligase)
Length = 347
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 245 YLVSFDNTNYF*IIIESNNQNFFFLQLDE*KIPLLV 138
Y + D ++F +I ESN + +F Q+ E K+P L+
Sbjct: 34 YFIFLDENHHFYLIEESNMHSKYFAQIKEKKLPPLI 69
>sp|Q5M5B9|SYT_STRT2 Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
sp|Q5M0T3|SYT_STRT1 Threonyl-tRNA synthetase (Threonine--tRNA ligase) (ThrRS)
Length = 648
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 214 FKLLLNQIIRISFSYNSTNKKFRSSFSNNTSNEKFSASFVLWQN 83
FK +L II + +N T+ +FR S+ + K+ + +W+N
Sbjct: 399 FKKILQLIIDVYEDFNLTDYRFRLSYRDPADKHKYFDNDEMWEN 442
>sp|P35177|SPT7_YEAST Transcriptional activator SPT7
Length = 1332
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 199 NQIIRISFSYNSTNKKFRSSFSNNTSNEKFSASFVLWQNCIVF 71
+QII+ S N+ KK +S F ++ E ++W+NC+ +
Sbjct: 479 HQIIKKSMDLNTVLKKLKS-FQYDSKQEFVDDIMLIWKNCLTY 520
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,632,561
Number of Sequences: 369166
Number of extensions: 444559
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)