Planaria EST Database


DrC_02677

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02677
         (242 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03701|CEBPZ_HUMAN  CCAAT/enhancer binding protein zeta (...    30   2.3  
sp|P31916|MAT2_EUGGR  Maturase-like protein 2                      28   6.6  
sp|Q5E951|TBCB_BOVIN  Tubulin-specific chaperone B (Tubulin ...    28   8.6  
>sp|Q03701|CEBPZ_HUMAN CCAAT/enhancer binding protein zeta (CCAAT-box-binding
           transcription factor) (CCAAT-binding factor) (CBF)
          Length = 998

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = +2

Query: 101 DEKHLESHRTNKFTKYSDIDK----IEEFEISEKIPDADVHKVYPELFSYL 241
           +E  ++++      K++D DK    +++ E  E +P+ DV    PE+ S++
Sbjct: 632 EENFIDANDDEDMEKFTDADKETEIVKKLETEETVPETDVETKKPEVASWV 682
>sp|P31916|MAT2_EUGGR Maturase-like protein 2
          Length = 758

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -1

Query: 134 YLFGEIQDVFHQLLVNIRLNILYASIED 51
           + F EI  +F+  LVNI  N++Y SIE+
Sbjct: 222 FFFVEIDKMFNLNLVNISSNLIYNSIEN 249
>sp|Q5E951|TBCB_BOVIN Tubulin-specific chaperone B (Tubulin folding cofactor B)
           (Cytoskeleton associated protein 1)
           (Cytoskeleton-associated protein CKAPI)
          Length = 244

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 110 HLESHRTNKFTKYSDIDKIEEFEISEK 190
           H+  H   +  +Y DI K+E++EIS++
Sbjct: 86  HVIDHSGARLGEYEDISKVEKYEISQE 112
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,169,076
Number of Sequences: 369166
Number of extensions: 262921
Number of successful extensions: 774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)