Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02677
(242 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03701|CEBPZ_HUMAN CCAAT/enhancer binding protein zeta (... 30 2.3
sp|P31916|MAT2_EUGGR Maturase-like protein 2 28 6.6
sp|Q5E951|TBCB_BOVIN Tubulin-specific chaperone B (Tubulin ... 28 8.6
>sp|Q03701|CEBPZ_HUMAN CCAAT/enhancer binding protein zeta (CCAAT-box-binding
transcription factor) (CCAAT-binding factor) (CBF)
Length = 998
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 101 DEKHLESHRTNKFTKYSDIDK----IEEFEISEKIPDADVHKVYPELFSYL 241
+E ++++ K++D DK +++ E E +P+ DV PE+ S++
Sbjct: 632 EENFIDANDDEDMEKFTDADKETEIVKKLETEETVPETDVETKKPEVASWV 682
>sp|P31916|MAT2_EUGGR Maturase-like protein 2
Length = 758
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 134 YLFGEIQDVFHQLLVNIRLNILYASIED 51
+ F EI +F+ LVNI N++Y SIE+
Sbjct: 222 FFFVEIDKMFNLNLVNISSNLIYNSIEN 249
>sp|Q5E951|TBCB_BOVIN Tubulin-specific chaperone B (Tubulin folding cofactor B)
(Cytoskeleton associated protein 1)
(Cytoskeleton-associated protein CKAPI)
Length = 244
Score = 27.7 bits (60), Expect = 8.6
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 110 HLESHRTNKFTKYSDIDKIEEFEISEK 190
H+ H + +Y DI K+E++EIS++
Sbjct: 86 HVIDHSGARLGEYEDISKVEKYEISQE 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,169,076
Number of Sequences: 369166
Number of extensions: 262921
Number of successful extensions: 774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)