Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02673
(202 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O47499|CYB_METSE Cytochrome b 51 7e-07
sp|O63848|CYB_SARGL Cytochrome b 48 6e-06
sp|P24958|CYB_LOXAF Cytochrome b 47 1e-05
sp|Q5I191|CYB_HERJA Cytochrome b 47 1e-05
sp|P92658|CYB_MAMPR Cytochrome b 47 1e-05
sp|O47885|CYB_ELEMA Cytochrome b 47 1e-05
sp|Q8HL81|CYB_SYNMA Cytochrome b 47 2e-05
sp|O21217|CYB_PIPKU Cytochrome b 46 2e-05
sp|O99797|CYB_EULMM Cytochrome b 46 2e-05
sp|O21223|CYB_PIPPI Cytochrome b 46 2e-05
>sp|O47499|CYB_METSE Cytochrome b
Length = 393
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 3 PFNINV*WN*GXXXXXXXXXXXXTGFFLSFYYCGDSSFSFSLMDLCFRDISFGFVLMLLH 182
P N++ WN G TG FL+ +YC D S +F+ +D RD+++GF+L H
Sbjct: 35 PANLSYMWNFGSLLGVCLVVQMATGIFLAMHYCSDVSLAFASVDHIMRDVNYGFLLRYFH 94
Query: 183 STG 191
+ G
Sbjct: 95 ANG 97
>sp|O63848|CYB_SARGL Cytochrome b
Length = 386
Score = 48.1 bits (113), Expect = 6e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Frame = +3
Query: 3 PFNINV*WN*GXXXXXXXXXXXXTGFFLSFYYCGDSSFSFSLMDLCFRDISFGFVLMLLH 182
P NI+ WN G TG FL+ +YC D S +F + RD++ GF+L +H
Sbjct: 30 PSNISYYWNFGSLLGLCLVIQLITGIFLAMHYCPDVSLAFDSISHILRDVNHGFMLKYIH 89
Query: 183 STGCMI 200
+ G +
Sbjct: 90 ANGASL 95
>sp|P24958|CYB_LOXAF Cytochrome b
Length = 378
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +3
Query: 3 PFNINV*WN*GXXXXXXXXXXXXTGFFLSFYYCGDSSFSFSLMDLCFRDISFGFVLMLLH 182
P NI+ WN G TG FL+ +Y D+ +FS M RD+++G+++ LH
Sbjct: 24 PSNISTWWNFGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLH 83
Query: 183 STGCMI 200
S G I
Sbjct: 84 SNGASI 89
>sp|Q5I191|CYB_HERJA Cytochrome b
Length = 379
Score = 47.4 bits (111), Expect = 1e-05
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +3
Query: 3 PFNINV*WN*GXXXXXXXXXXXXTGFFLSFYYCGDSSFSFSLMDLCFRDISFGFVLMLLH 182
P NI+ WN G TG FL+ YY D+S +FS + RD+++G+++ +H
Sbjct: 24 PSNISAWWNFGSLLGVCLILQILTGLFLAMYYTSDTSTAFSSVTHICRDVNYGWIIRYMH 83
Query: 183 STG 191
+ G
Sbjct: 84 ANG 86
>sp|P92658|CYB_MAMPR Cytochrome b
Length = 378
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +3
Query: 3 PFNINV*WN*GXXXXXXXXXXXXTGFFLSFYYCGDSSFSFSLMDLCFRDISFGFVLMLLH 182
P NI+ WN G TG FL+ +Y D+ +FS M RD+++G+++ LH
Sbjct: 24 PSNISTWWNFGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLH 83
Query: 183 STGCMI 200
S G I
Sbjct: 84 SNGASI 89
>sp|O47885|CYB_ELEMA Cytochrome b
Length = 378
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +3
Query: 3 PFNINV*WN*GXXXXXXXXXXXXTGFFLSFYYCGDSSFSFSLMDLCFRDISFGFVLMLLH 182
P NI+ WN G TG FL+ +Y D+ +FS M RD+++G+++ LH
Sbjct: 24 PSNISTWWNFGSLLGACLITQILTGLFLAMHYTPDTMTAFSSMSHICRDVNYGWIIRQLH 83
Query: 183 STGCMI 200
S G I
Sbjct: 84 SNGASI 89
>sp|Q8HL81|CYB_SYNMA Cytochrome b
Length = 393
Score = 46.6 bits (109), Expect = 2e-05
Identities = 23/66 (34%), Positives = 33/66 (50%)
Frame = +3
Query: 3 PFNINV*WN*GXXXXXXXXXXXXTGFFLSFYYCGDSSFSFSLMDLCFRDISFGFVLMLLH 182
P NI+ WN G TGFFL+ +Y + SFSF+ + RD+ +G+ L H
Sbjct: 24 PSNISALWNFGSLLGLCLMIQILTGFFLAMHYSAEMSFSFASVTHITRDVGYGWFLRNTH 83
Query: 183 STGCMI 200
+ G I
Sbjct: 84 ANGASI 89
>sp|O21217|CYB_PIPKU Cytochrome b
Length = 379
Score = 46.2 bits (108), Expect = 2e-05
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 3 PFNINV*WN*GXXXXXXXXXXXXTGFFLSFYYCGDSSFSFSLMDLCFRDISFGFVLMLLH 182
P NI+ WN G TG FL+ +Y D++ +FS + RD+++G+VL LH
Sbjct: 24 PSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTATAFSSVTHICRDVNYGWVLRYLH 83
Query: 183 STG 191
+ G
Sbjct: 84 ANG 86
>sp|O99797|CYB_EULMM Cytochrome b
Length = 379
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/63 (33%), Positives = 35/63 (55%)
Frame = +3
Query: 3 PFNINV*WN*GXXXXXXXXXXXXTGFFLSFYYCGDSSFSFSLMDLCFRDISFGFVLMLLH 182
P NI+ WN G TG FL+ +Y GD++ FS + +RD+++G+++ LH
Sbjct: 24 PSNISSWWNFGSLLGACLALQIITGLFLAMHYTGDTTTVFSSVAHIWRDVNYGWIIRYLH 83
Query: 183 STG 191
+ G
Sbjct: 84 ANG 86
>sp|O21223|CYB_PIPPI Cytochrome b
Length = 379
Score = 46.2 bits (108), Expect = 2e-05
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +3
Query: 3 PFNINV*WN*GXXXXXXXXXXXXTGFFLSFYYCGDSSFSFSLMDLCFRDISFGFVLMLLH 182
P NI+ WN G TG FL+ +Y D++ +FS + RD+++G+VL LH
Sbjct: 24 PSNISAWWNFGSLLGICLGLQILTGLFLAMHYTSDTATAFSSVTHICRDVNYGWVLRYLH 83
Query: 183 STG 191
+ G
Sbjct: 84 ANG 86
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,701,352
Number of Sequences: 369166
Number of extensions: 157024
Number of successful extensions: 1592
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 68,354,980
effective HSP length: 38
effective length of database: 61,335,050
effective search space used: 1717381400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)