Planaria EST Database


DrC_02670

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02670
         (816 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q95207|INAR2_SHEEP  Interferon-alpha/beta receptor beta c...    33   0.93 
sp|Q64455|PTPRJ_MOUSE  Receptor-type tyrosine-protein phosph...    31   4.6  
sp|Q01583|DGK1_DROME  Diacylglycerol kinase (Diglyceride kin...    30   6.1  
sp|Q17778|NUC1_CAEEL  Deoxyribonuclease II precursor (DNase II)    30   6.1  
sp|P28167|ZFH2_DROME  Zinc finger protein 2 (Zinc finger hom...    30   6.1  
sp|P15549|NU2M_STRPU  NADH-ubiquinone oxidoreductase chain 2...    30   7.9  
>sp|Q95207|INAR2_SHEEP Interferon-alpha/beta receptor beta chain precursor (IFN-alpha-REC)
           (Type I interferon receptor) (IFN-R) (Interferon
           alpha/beta receptor-2)
          Length = 536

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 1/144 (0%)
 Frame = +1

Query: 193 GNLVTVHMGTMT-NFSNGVNHDQYIHSVVMDQLLPNTTYKIKIEFSNCQKRKANFPERVV 369
           GN V  H   +T N +   N+       V+D+L+PNT Y I + F     RK N     +
Sbjct: 178 GNSVKRHQPQITGNITENFNY-------VIDKLIPNTNYCISVYFEPKDPRKIN--RSPL 228

Query: 370 N*ILFNPENMLENIGFRKLCSRFVPRSLTAEMRQKRMKACQENLYLFHSIGQSLLKNIVT 549
             ILF P    E+     +    +   L A         C   + +   IG   L+N   
Sbjct: 229 KCILFRPRRESESSEPATIGGILILFLLAA--------VCISTVMILKRIGYICLRNDFP 280

Query: 550 EDDTSLSLYVPYSGHESHEWVFPE 621
           E   +L+ Y      +   WVFPE
Sbjct: 281 E---ALNFY------KLSVWVFPE 295
>sp|Q64455|PTPRJ_MOUSE Receptor-type tyrosine-protein phosphatase eta precursor
           (Protein-tyrosine phosphatase eta) (R-PTP-eta) (HPTP
           beta-like tyrosine phosphatase) (Protein-tyrosine
           phosphatase receptor type J) (Susceptibility to colon
           cancer-1)
          Length = 1238

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
 Frame = +1

Query: 40  LYNDVILSEIVQIDN-------KTQPQQI-HLSIGNNPTQMVATWSTFSPTDTIVRYGIG 195
           LYN  I  E+ QI          T+P  + H+ +    T     W           Y + 
Sbjct: 504 LYNVTIFPEVDQIQGISNSITQYTRPSSVSHIEVNTTTTTAAIRWKNEDAASASYAYSVL 563

Query: 196 NLVTVHMGTMTNFSNGVNHDQYIHSVVMDQLLPNTTYKIKI 318
            L T   G  +N ++    D    S+++ +L+P  +Y +KI
Sbjct: 564 ILKT---GDGSNVTSNFTKDP---SILIPELIPGVSYTVKI 598
>sp|Q01583|DGK1_DROME Diacylglycerol kinase (Diglyceride kinase 1) (DGK 1) (DAG kinase 1)
          Length = 791

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 776 RFQLDKQCTVIVRVDVSCSKVGLDHAFCIPEYTENQKFP 660
           + Q DK CTV   +  +   VG+D A C+  + E +K P
Sbjct: 551 KVQSDKDCTVPYNIINNYFSVGVDAAICVKFHLEREKNP 589
>sp|Q17778|NUC1_CAEEL Deoxyribonuclease II precursor (DNase II)
          Length = 375

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 136 MVATWSTFS--PTDTIVRYGIGNLVTVHMGTMTNFSNGVNHDQYIHSVVM 279
           +V TW   S  P D  + Y   + +++H+G+ T FS   +H +  HS  M
Sbjct: 281 VVETWRRGSEIPLDCKLTYHANDALSIHVGSTTAFSYTKDHSKMAHSADM 330
>sp|P28167|ZFH2_DROME Zinc finger protein 2 (Zinc finger homeodomain protein 2)
          Length = 3005

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +2

Query: 620 KKSTKYASFRDISSEISDSQCILGCKRRDQDRLYCRKHQLSLLLCTVYQVGSGNPNEMS 796
           K S K  SFR +S++ ++S C        QD++   K Q  +L+C + ++  GN    S
Sbjct: 99  KSSPKIHSFRVVSAQDANSTC--------QDQIRAFKIQKPILMCFICKLSFGNVKSFS 149
>sp|P15549|NU2M_STRPU NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 352

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
 Frame = +1

Query: 424 LCSRFVPRSLTAEMRQKRMKACQENLYLFHSIGQSLLK---------NIVTEDDTSLSLY 576
           LCS F PR++ A+ +   ++A    L L  ++GQ+ L          N VT    S++L 
Sbjct: 44  LCSGFSPRNVEADNKYFLVQASSAALLLNGALGQAWLTGSWSILDPVNEVTSICLSIALA 103

Query: 577 VPYSGHESHEWVFPEKKHQICFVQGHLIGNF 669
                   H W FP+    + F QG +I  +
Sbjct: 104 FKIGLAPVHFW-FPDVLQGLPFFQGLIIATW 133
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,495,473
Number of Sequences: 369166
Number of extensions: 2141124
Number of successful extensions: 5206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5201
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)