Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02670
(816 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q95207|INAR2_SHEEP Interferon-alpha/beta receptor beta c... 33 0.93
sp|Q64455|PTPRJ_MOUSE Receptor-type tyrosine-protein phosph... 31 4.6
sp|Q01583|DGK1_DROME Diacylglycerol kinase (Diglyceride kin... 30 6.1
sp|Q17778|NUC1_CAEEL Deoxyribonuclease II precursor (DNase II) 30 6.1
sp|P28167|ZFH2_DROME Zinc finger protein 2 (Zinc finger hom... 30 6.1
sp|P15549|NU2M_STRPU NADH-ubiquinone oxidoreductase chain 2... 30 7.9
>sp|Q95207|INAR2_SHEEP Interferon-alpha/beta receptor beta chain precursor (IFN-alpha-REC)
(Type I interferon receptor) (IFN-R) (Interferon
alpha/beta receptor-2)
Length = 536
Score = 33.1 bits (74), Expect = 0.93
Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 1/144 (0%)
Frame = +1
Query: 193 GNLVTVHMGTMT-NFSNGVNHDQYIHSVVMDQLLPNTTYKIKIEFSNCQKRKANFPERVV 369
GN V H +T N + N+ V+D+L+PNT Y I + F RK N +
Sbjct: 178 GNSVKRHQPQITGNITENFNY-------VIDKLIPNTNYCISVYFEPKDPRKIN--RSPL 228
Query: 370 N*ILFNPENMLENIGFRKLCSRFVPRSLTAEMRQKRMKACQENLYLFHSIGQSLLKNIVT 549
ILF P E+ + + L A C + + IG L+N
Sbjct: 229 KCILFRPRRESESSEPATIGGILILFLLAA--------VCISTVMILKRIGYICLRNDFP 280
Query: 550 EDDTSLSLYVPYSGHESHEWVFPE 621
E +L+ Y + WVFPE
Sbjct: 281 E---ALNFY------KLSVWVFPE 295
>sp|Q64455|PTPRJ_MOUSE Receptor-type tyrosine-protein phosphatase eta precursor
(Protein-tyrosine phosphatase eta) (R-PTP-eta) (HPTP
beta-like tyrosine phosphatase) (Protein-tyrosine
phosphatase receptor type J) (Susceptibility to colon
cancer-1)
Length = 1238
Score = 30.8 bits (68), Expect = 4.6
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Frame = +1
Query: 40 LYNDVILSEIVQIDN-------KTQPQQI-HLSIGNNPTQMVATWSTFSPTDTIVRYGIG 195
LYN I E+ QI T+P + H+ + T W Y +
Sbjct: 504 LYNVTIFPEVDQIQGISNSITQYTRPSSVSHIEVNTTTTTAAIRWKNEDAASASYAYSVL 563
Query: 196 NLVTVHMGTMTNFSNGVNHDQYIHSVVMDQLLPNTTYKIKI 318
L T G +N ++ D S+++ +L+P +Y +KI
Sbjct: 564 ILKT---GDGSNVTSNFTKDP---SILIPELIPGVSYTVKI 598
>sp|Q01583|DGK1_DROME Diacylglycerol kinase (Diglyceride kinase 1) (DGK 1) (DAG kinase 1)
Length = 791
Score = 30.4 bits (67), Expect = 6.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 776 RFQLDKQCTVIVRVDVSCSKVGLDHAFCIPEYTENQKFP 660
+ Q DK CTV + + VG+D A C+ + E +K P
Sbjct: 551 KVQSDKDCTVPYNIINNYFSVGVDAAICVKFHLEREKNP 589
>sp|Q17778|NUC1_CAEEL Deoxyribonuclease II precursor (DNase II)
Length = 375
Score = 30.4 bits (67), Expect = 6.1
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 136 MVATWSTFS--PTDTIVRYGIGNLVTVHMGTMTNFSNGVNHDQYIHSVVM 279
+V TW S P D + Y + +++H+G+ T FS +H + HS M
Sbjct: 281 VVETWRRGSEIPLDCKLTYHANDALSIHVGSTTAFSYTKDHSKMAHSADM 330
>sp|P28167|ZFH2_DROME Zinc finger protein 2 (Zinc finger homeodomain protein 2)
Length = 3005
Score = 30.4 bits (67), Expect = 6.1
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 620 KKSTKYASFRDISSEISDSQCILGCKRRDQDRLYCRKHQLSLLLCTVYQVGSGNPNEMS 796
K S K SFR +S++ ++S C QD++ K Q +L+C + ++ GN S
Sbjct: 99 KSSPKIHSFRVVSAQDANSTC--------QDQIRAFKIQKPILMCFICKLSFGNVKSFS 149
>sp|P15549|NU2M_STRPU NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 352
Score = 30.0 bits (66), Expect = 7.9
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Frame = +1
Query: 424 LCSRFVPRSLTAEMRQKRMKACQENLYLFHSIGQSLLK---------NIVTEDDTSLSLY 576
LCS F PR++ A+ + ++A L L ++GQ+ L N VT S++L
Sbjct: 44 LCSGFSPRNVEADNKYFLVQASSAALLLNGALGQAWLTGSWSILDPVNEVTSICLSIALA 103
Query: 577 VPYSGHESHEWVFPEKKHQICFVQGHLIGNF 669
H W FP+ + F QG +I +
Sbjct: 104 FKIGLAPVHFW-FPDVLQGLPFFQGLIIATW 133
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,495,473
Number of Sequences: 369166
Number of extensions: 2141124
Number of successful extensions: 5206
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5201
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)