Planaria EST Database


DrC_02663

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02663
         (664 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q09406|YRG5_CAEEL  Hypothetical WD-repeat protein K06A1.5...    53   8e-07
sp|P32330|YKM1_YEAST  Hypothetical WD repeat-containing prot...    47   6e-05
sp|O15736|TIPD_DICDI  Protein tipD                                 46   8e-05
sp|Q93847|YZLL_CAEEL  Hypothetical WD-repeat protein K04G11....    45   2e-04
sp|Q8N157|AHI1_HUMAN  Jouberin (Abelson helper integration s...    45   2e-04
sp|Q19124|YDEM_CAEEL  Hypothetical WD-repeat protein F02E8.5...    45   2e-04
sp|Q6DTM3|AHI1_RAT  Jouberin (Abelson helper integration sit...    44   3e-04
sp|Q8K3E5|AHI1_MOUSE  Jouberin (Abelson helper integration s...    43   6e-04
sp|Q24371|L2DTL_DROME  Lethal(2)denticleless protein (Protei...    42   0.001
sp|P61964|WDR5_HUMAN  WD-repeat protein 5 (BMP2-induced 3-kb...    42   0.001
>sp|Q09406|YRG5_CAEEL Hypothetical WD-repeat protein K06A1.5 in chromosome II
          Length = 464

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
 Frame = +1

Query: 100 RVTAIEVDPTDSCKILVTTNDSRVRLIDARDYHIICKYRG--FINSSSRIRASFSPTGKY 273
           +V+++++   D  ++L ++ D  + LID R+Y II  Y    +  S    RA FS TG+Y
Sbjct: 347 KVSSLDIS-MDGLQVLASSRDDTLSLIDVRNYGIIHLYSAEQYKTSCDSTRAIFSSTGEY 405

Query: 274 IISGSENSFFYIWK-KDVEVNKMTRFSTTRKD 366
           +++GS NS  +IW  K  ++ K+ +  T R D
Sbjct: 406 VLAGSSNSSVFIWNTKTTKLEKVVK--TARSD 435
>sp|P32330|YKM1_YEAST Hypothetical WD repeat-containing protein YKL121w
          Length = 852

 Score = 46.6 bits (109), Expect = 6e-05
 Identities = 48/233 (20%), Positives = 95/233 (40%), Gaps = 22/233 (9%)
 Frame = +1

Query: 1    VGTYDGRI-LFYTAELEYITSMAIK----------SSHRKNKYC------RVTAIEV--- 120
            +GT++G I +  T  L++++S  +           S H  ++Y       R+T ++    
Sbjct: 380  IGTFNGYIYVLLTHGLKFVSSFHVSDKSTQGTTKNSFHPSSEYGKVQHGPRITGLQCFFS 439

Query: 121  DPTDSCKILVTTNDSRVRLIDARDYHIICKYRGFINSSSRIRASF--SPTGKYIISGSEN 294
                + +++VTTNDS++++ D  +   +  ++GF + SSR R  F        + +GS++
Sbjct: 440  KVDKNLRLIVTTNDSKIQIFDLNEKKPLELFKGFQSGSSRHRGQFLMMKNEPVVFTGSDD 499

Query: 295  SFFYIWKKDVEVNKMTRFSTTRKDRNNYWEAIKAHETVVSVSAFSPTPHLVLDKKFRRRH 474
             +FY WK     N     + T   R        + + ++ + +   T    L +   +  
Sbjct: 500  HWFYTWKMQ-SFNLSAEMNCTAPHRKKRLSGSMSLKGLLRIVSNKSTNDECLTETSNQSS 558

Query: 475  SINMSTHPYSLDQHSYVNKSENYLGEVIVSADISGVIRVFKNRLHSLPVSAKS 633
            S            H++ N S+N L    V +             H+ PV+  S
Sbjct: 559  S------------HTFTNSSKNVLQTQTVGSQAIKNNHYISFHAHNSPVTCAS 599
>sp|O15736|TIPD_DICDI Protein tipD
          Length = 612

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
 Frame = +1

Query: 100 RVTAIEVDPTDSCKILVTTNDSRVRLIDARDYHIICKYRG--FINSSSRIRASFSPTGKY 273
           ++T+I   PT++ +IL  + D  +++ID R +  I  ++   + N  +  +AS+SP G+Y
Sbjct: 494 QITSITNSPTNTNQILTNSRDHTLKIIDIRTFDTIRTFKDPEYRNGLNWTKASWSPDGRY 553

Query: 274 IISGSENSFFYIW 312
           I SGS +    IW
Sbjct: 554 IASGSIDGSICIW 566
>sp|Q93847|YZLL_CAEEL Hypothetical WD-repeat protein K04G11.4 IN chromosome X
          Length = 395

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
 Frame = +1

Query: 4   GTYDGRILFYTAELEYITSMAIKSSHRKNKYCRVTAIEVDPTDSCKILVTTNDSRVRLID 183
           G+YDG +  + +         I   H       +T ++  P     IL +  ++ ++L D
Sbjct: 250 GSYDGIVRIWDSTTGTCVKTLIDEEHPP-----ITHVKFSPNGKY-ILASNLNNTLKLWD 303

Query: 184 ARDYHIICKYRGFINSSSRIRASFSPTG-KYIISGSENSFFYIW 312
            +   ++ +Y G  NS   + A+FS TG K+I+SGSE+   YIW
Sbjct: 304 YQKLRVLKEYTGHENSKYCVAANFSVTGGKWIVSGSEDHKVYIW 347
>sp|Q8N157|AHI1_HUMAN Jouberin (Abelson helper integration site 1 protein homolog) (AHI-1)
          Length = 1196

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 20/73 (27%), Positives = 42/73 (57%)
 Frame = +1

Query: 103  VTAIEVDPTDSCKILVTTNDSRVRLIDARDYHIICKYRGFINSSSRIRASFSPTGKYIIS 282
            ++ +E+ P    ++L+ T DS +R++D R   +  K+ G  N   +I ++ +P G ++ +
Sbjct: 803  ISYLEIHPNGK-RLLIHTKDSTLRIMDLRIL-VARKFVGAANYREKIHSTLTPCGTFLFA 860

Query: 283  GSENSFFYIWKKD 321
            GSE+   Y+W  +
Sbjct: 861  GSEDGIVYVWNPE 873
>sp|Q19124|YDEM_CAEEL Hypothetical WD-repeat protein F02E8.5 in chromosome X
          Length = 578

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +1

Query: 100 RVTAIEVDPTDSCKILVTTNDSRVRLIDARDYHIICKY--RGFINSSSRIRASFSPTGKY 273
           R+T+++V  +  C++LV+T D  + LID R +  +  Y    +  SS   R   S   +Y
Sbjct: 463 RITSLDVTMS-GCELLVSTRDDTISLIDLRTFQTVHCYSAENYRTSSDLSRVVLSSGNEY 521

Query: 274 IISGSENSFFYIWKKD 321
           + +GS N   ++W ++
Sbjct: 522 VAAGSSNGSIFVWNRN 537
>sp|Q6DTM3|AHI1_RAT Jouberin (Abelson helper integration site 1 protein homolog)
           (AHI-1)
          Length = 1047

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
 Frame = +1

Query: 103 VTAIEVDPTDSCKILVTTNDSRVRLIDARDYHIICKYRGFINSSSRIRASFSPTGKYIIS 282
           V+ +EV P    ++L+ T DS +R++D R      K+ G  N   +I ++ +P G  + S
Sbjct: 654 VSYLEVHPNGK-RLLIHTKDSTLRIMDLRIL-AARKFVGAANYREKIHSTLTPCGTLLFS 711

Query: 283 GSENSFFYIWK----KDVEVNKMTRFSTTRKDRNNYWEAIKAHETVVSVSAFSPTPHLVL 450
           GSE+   Y+W     + V +     F +T +D + +       E +V+  AF  +  ++L
Sbjct: 712 GSEDGIVYVWNPETGEQVAMYSELPFKSTIRDISYH-----PFENMVAFCAFGQSEPILL 766
>sp|Q8K3E5|AHI1_MOUSE Jouberin (Abelson helper integration site 1 protein) (AHI-1)
          Length = 1047

 Score = 43.1 bits (100), Expect = 6e-04
 Identities = 22/73 (30%), Positives = 40/73 (54%)
 Frame = +1

Query: 103 VTAIEVDPTDSCKILVTTNDSRVRLIDARDYHIICKYRGFINSSSRIRASFSPTGKYIIS 282
           ++ +EV P    ++L+ T DS +R++D R      K+ G  N   +I ++ +P G  + S
Sbjct: 653 ISYLEVHPNGK-RLLIHTKDSTLRIMDLRIL-AARKFVGAANYREKIHSTLTPCGTLLFS 710

Query: 283 GSENSFFYIWKKD 321
           GSE+   Y+W  +
Sbjct: 711 GSEDGIVYVWNPE 723
>sp|Q24371|L2DTL_DROME Lethal(2)denticleless protein (Protein DTL83)
          Length = 769

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = +1

Query: 211 YRGFINSSSRIRASFSPTGKYIISGSENSFFYIWKKD 321
           Y+G +NS+  I++  SP GKY++SGS +   YIW  D
Sbjct: 315 YKGLLNSTFYIKSCLSPDGKYLLSGSSDERAYIWNLD 351
>sp|P61964|WDR5_HUMAN WD-repeat protein 5 (BMP2-induced 3-kb gene protein)
 sp|P61965|WDR5_MOUSE WD-repeat protein 5 (BMP2-induced 3-kb gene protein) (WD-repeat
           protein BIG-3)
          Length = 334

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
 Frame = +1

Query: 142 ILVTTNDSRVRLIDARDYHIICKYRGFINSSSRIRASFSPTG-KYIISGSENSFFYIWKK 318
           IL  T D+ ++L D      +  Y G  N    I A+FS TG K+I+SGSE++  YIW  
Sbjct: 229 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW-- 286

Query: 319 DVEVNKMTRFSTTRKDRNNYWEAIKAHETVVSVSAFSPTPHLVLDKKFRRRHSINM 486
               N  T+            + ++ H  VV  +A  PT +++         +I +
Sbjct: 287 ----NLQTK---------EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKL 329
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,443,604
Number of Sequences: 369166
Number of extensions: 1294342
Number of successful extensions: 3804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3793
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5560129980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)