Planaria EST Database


DrC_02658

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02658
         (757 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y5Y6|ST14_HUMAN  Suppressor of tumorigenicity 14 (Matri...    31   3.1  
sp|O60152|UBR1_SCHPO  Ubiquitin-protein ligase E3 component ...    30   7.0  
>sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 (Matriptase) (Membrane-type serine
           protease 1) (MT-SP1) (Prostamin) (Serine protease
           TADG-15) (Tumor associated differentially-expressed
           gene-15 protein)
          Length = 855

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 551 CDSWQDLFDYRNSLKKKCDEFHQKYSENKKYDPTNYI 661
           CD W D  D+ + L   CD  HQ   +NK   P  ++
Sbjct: 471 CDGWADCTDHSDELNCSCDAGHQFTCKNKFCKPLFWV 507
>sp|O60152|UBR1_SCHPO Ubiquitin-protein ligase E3 component N-recognin-1
           (N-end-recognizing protein)
          Length = 1958

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 683 VVSVRIQEYNLLDHISCFHYIFDGIRHISSSNYFDN----RTNLANYHNFLIIHYF 528
           V  + + EY+ L  I+   Y F   + +++ NY D     RT+ A +H+   IH F
Sbjct: 516 VAKLLVTEYDFLTTINATLYTFFTYKKLNTPNYVDQHAMIRTDSAAFHSRRYIHIF 571
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,248,524
Number of Sequences: 369166
Number of extensions: 1128092
Number of successful extensions: 3247
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3245
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)