Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02658
(757 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 (Matri... 31 3.1
sp|O60152|UBR1_SCHPO Ubiquitin-protein ligase E3 component ... 30 7.0
>sp|Q9Y5Y6|ST14_HUMAN Suppressor of tumorigenicity 14 (Matriptase) (Membrane-type serine
protease 1) (MT-SP1) (Prostamin) (Serine protease
TADG-15) (Tumor associated differentially-expressed
gene-15 protein)
Length = 855
Score = 31.2 bits (69), Expect = 3.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 551 CDSWQDLFDYRNSLKKKCDEFHQKYSENKKYDPTNYI 661
CD W D D+ + L CD HQ +NK P ++
Sbjct: 471 CDGWADCTDHSDELNCSCDAGHQFTCKNKFCKPLFWV 507
>sp|O60152|UBR1_SCHPO Ubiquitin-protein ligase E3 component N-recognin-1
(N-end-recognizing protein)
Length = 1958
Score = 30.0 bits (66), Expect = 7.0
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = -3
Query: 683 VVSVRIQEYNLLDHISCFHYIFDGIRHISSSNYFDN----RTNLANYHNFLIIHYF 528
V + + EY+ L I+ Y F + +++ NY D RT+ A +H+ IH F
Sbjct: 516 VAKLLVTEYDFLTTINATLYTFFTYKKLNTPNYVDQHAMIRTDSAAFHSRRYIHIF 571
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,248,524
Number of Sequences: 369166
Number of extensions: 1128092
Number of successful extensions: 3247
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3245
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)