Planaria EST Database


DrC_02657

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02657
         (798 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UKT9|AIOL_HUMAN  Zinc finger protein Aiolos                   37   0.048
sp|P39413|AEF1_DROME  Adult enhancer factor 1 (AEF-1)              36   0.14 
sp|P48906|NU2M_PICCA  NADH-ubiquinone oxidoreductase chain 2...    35   0.31 
sp|P47043|ZAP1_YEAST  Zinc-responsive transcriptional regula...    33   0.69 
sp|P12577|L_PI3H4  Large structural protein (L protein) (Tra...    33   0.90 
sp|Q09811|HUS2_SCHPO  ATP-dependent DNA helicase hus2/rqh1         32   1.5  
sp|Q9P2J8|ZN624_HUMAN  Zinc finger protein 624                     32   1.5  
sp|Q8IBS5|CDPK4_PLAF7  Calcium-dependent protein kinase 4          32   2.0  
sp|Q06730|ZN33A_HUMAN  Zinc finger protein 33A (Zinc finger ...    32   2.6  
sp|Q6NUD8|CHM1A_XENLA  Charged multivesicular body protein 1...    32   2.6  
>sp|Q9UKT9|AIOL_HUMAN Zinc finger protein Aiolos
          Length = 509

 Score = 37.4 bits (85), Expect = 0.048
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = +3

Query: 495 NLYENVKITKYVDPKASTSATAAQYDCHICGSFSTDQYSEFYTHLSIHNNEMCRKKQSQK 674
           N YEN+K+ ++V    S+  T+ + +C +CG  S   ++    H   H  E        +
Sbjct: 94  NEYENIKLERHVVSFDSSRPTSGKMNCDVCG-LSCISFNVLMVHKRSHTGE--------R 144

Query: 675 RGQCLICRLIFPQI-MLNNHIKTHIDH--IQCNIC 770
             QC  C   F Q   L  HIK H      +C++C
Sbjct: 145 PFQCNQCGASFTQKGNLLRHIKLHTGEKPFKCHLC 179
>sp|P39413|AEF1_DROME Adult enhancer factor 1 (AEF-1)
          Length = 308

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 21/116 (18%)
 Frame = +3

Query: 462 ICNKRNIDQINNLYENVKITKYVDPKASTSATAAQYDCHICGSFSTDQYSEFYTHLSIHN 641
           +C++R   Q++ L  +VKI     P          Y C++C   +  Q S    HL IH 
Sbjct: 188 VCDRR-FRQLSTLTNHVKIHTGEKP----------YKCNVCDK-TFRQSSTLTNHLKIHT 235

Query: 642 NE------MCRKKQSQ--------------KRGQCLICRLIFPQIM-LNNHIKTHI 746
            E       C K   Q              K  +C+IC+  F Q   LNNHIK H+
Sbjct: 236 GEKPYNCNFCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHV 291
>sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 567

 Score = 34.7 bits (78), Expect = 0.31
 Identities = 21/69 (30%), Positives = 37/69 (53%)
 Frame = +1

Query: 403 NYYSMKIYIYPMKKLIKLWIFAIKEILIKLIICTRMLKLQNTSIRKLQQVQRLHNMTVTY 582
           N   + IYI+    L KL IF I  I + LI+   +L +  T + K+Q     +N+++  
Sbjct: 69  NNNDLNIYIF--NDLYKLNIFNIYIIFLLLIVIISLLSINTTYLTKIQIKNNNNNISIGK 126

Query: 583 VDHFLLINI 609
            D+++ +NI
Sbjct: 127 SDNYIELNI 135
>sp|P47043|ZAP1_YEAST Zinc-responsive transcriptional regulator ZAP1
          Length = 880

 Score = 33.5 bits (75), Expect = 0.69
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = +3

Query: 567 YDCHICGS-FSTDQYSEFYTHLSIHNNEMCRKKQSQKRGQCLICRLIFPQIM-LNNHIKT 740
           Y CHIC   F+    S    H+  H  E        K  QC IC   F +   L+ HIKT
Sbjct: 796 YKCHICNKKFAIS--SSLKIHIRTHTGE--------KPLQCKICGKRFNESSNLSKHIKT 845

Query: 741 HIDHIQCNICKE 776
           H    +C+ C +
Sbjct: 846 HQKKYKCSDCSK 857
>sp|P12577|L_PI3H4 Large structural protein (L protein) (Transcriptase) (Replicase)
           [Includes: RNA-directed RNA polymerase ; mRNA
           (guanine-N(7)-)-methyltransferase ; mRNA
           guanylyltransferase ]
          Length = 2233

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
 Frame = +3

Query: 381 NSMFDEKELLFD--EDI--YLPDEEVDKIMDICNKRNIDQINNLYENVKITKYVDPKAST 548
           N +  E EL+F+  E I  +L  + +DKI+DI NK  ID+I  ++   +   +   +AS 
Sbjct: 314 NHVLSEMELIFESRESIKEFLSVDYIDKILDIFNKSTIDEIAEIFSFFRTFGHPPLEASI 373

Query: 549 SA 554
           +A
Sbjct: 374 AA 375
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1
          Length = 1328

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 14/97 (14%)
 Frame = +3

Query: 297  MDERKDLAIEAEIDKIMNNIDIETVIDENSMFDEKELLFDED---IYLP-------DEEV 446
            +DE++      E+D  + ++D +  ID N++  + E  F +D   +Y P       DEEV
Sbjct: 1189 IDEKEQNLEGTELDPSLQSLDTDYPIDTNALSLDHEQGFSDDSDSVYEPSSPIEEGDEEV 1248

Query: 447  D----KIMDICNKRNIDQINNLYENVKITKYVDPKAS 545
            D     I++  N +++ Q  ++ +  K T Y  P  S
Sbjct: 1249 DGQRKDILNFMNSQSLTQTGSVPKR-KSTSYTRPSKS 1284
>sp|Q9P2J8|ZN624_HUMAN Zinc finger protein 624
          Length = 739

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = +3

Query: 567 YDCHICGSFSTDQYSEFYTHLSIHNNEMCRKKQSQKRGQCLICRLIFPQIMLNNHIKTHI 746
           Y+C+ CG  +  Q S    H  IH  E     +  K  +C    +    +M++  I T  
Sbjct: 178 YECNECGK-TFSQPSYLSQHKKIHTGE-----KPYKCNECGKAFIASSSLMVHQRIHTKE 231

Query: 747 DHIQCNICKEFVSQ 788
              QCN+C +  SQ
Sbjct: 232 KPYQCNVCGKSFSQ 245
>sp|Q8IBS5|CDPK4_PLAF7 Calcium-dependent protein kinase 4
          Length = 528

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +3

Query: 267 KEITFTKLIAMDERKDLAIEAEIDKIMNNIDIETVIDENSMFDEKELL---FDEDIYLPD 437
           KE+   K     +  + AIE E+D+I+N+ID    +D+N   +  E L    D  + L  
Sbjct: 406 KELLKLKGEDTSDLDNAAIEYEVDQILNSID----LDQNGYIEYSEFLTVSIDRKLLLST 461

Query: 438 EEVDKIMDICNKRNIDQIN 494
           E ++K   + +K    +I+
Sbjct: 462 ERLEKAFKLFDKDGSGKIS 480
>sp|Q06730|ZN33A_HUMAN Zinc finger protein 33A (Zinc finger protein KOX31) (HA0946)
          Length = 810

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
 Frame = +3

Query: 567 YDCHICGSFSTDQYSEFYTHLSIHNNEMCRKKQSQKRGQCLIC-RLIFPQIMLNNHIKTH 743
           Y+C+ CG F   + S     L++H+    R    +K  QC  C ++ + +  L  H ++H
Sbjct: 692 YECNECGKFFRHKSS-----LTVHH----RAHTGEKSCQCNECGKIFYRKSELAQHQRSH 742

Query: 744 IDH--IQCNICKEFVSQ 788
                 +CN C++  SQ
Sbjct: 743 TGEKPYECNTCRKTFSQ 759
>sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1a (Chromatin modifying protein
           1a) (CHMP1a)
          Length = 196

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = +3

Query: 288 LIAMDERKDLAIEAEIDKIMNNIDIETVIDENSMFDEKELLFDEDIYLPDEEVDKIMDIC 467
           L +MD +K  A+  + D+ + N+D+ T + E+SM     L        P E+VD ++   
Sbjct: 100 LSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLT------TPQEQVDNLIVQI 153

Query: 468 NKRN----IDQINNL 500
            + N    +DQ+N L
Sbjct: 154 AEENGLEVMDQLNQL 168
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,090,919
Number of Sequences: 369166
Number of extensions: 1468949
Number of successful extensions: 4371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4367
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)