Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02657
(798 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UKT9|AIOL_HUMAN Zinc finger protein Aiolos 37 0.048
sp|P39413|AEF1_DROME Adult enhancer factor 1 (AEF-1) 36 0.14
sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2... 35 0.31
sp|P47043|ZAP1_YEAST Zinc-responsive transcriptional regula... 33 0.69
sp|P12577|L_PI3H4 Large structural protein (L protein) (Tra... 33 0.90
sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 32 1.5
sp|Q9P2J8|ZN624_HUMAN Zinc finger protein 624 32 1.5
sp|Q8IBS5|CDPK4_PLAF7 Calcium-dependent protein kinase 4 32 2.0
sp|Q06730|ZN33A_HUMAN Zinc finger protein 33A (Zinc finger ... 32 2.6
sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1... 32 2.6
>sp|Q9UKT9|AIOL_HUMAN Zinc finger protein Aiolos
Length = 509
Score = 37.4 bits (85), Expect = 0.048
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +3
Query: 495 NLYENVKITKYVDPKASTSATAAQYDCHICGSFSTDQYSEFYTHLSIHNNEMCRKKQSQK 674
N YEN+K+ ++V S+ T+ + +C +CG S ++ H H E +
Sbjct: 94 NEYENIKLERHVVSFDSSRPTSGKMNCDVCG-LSCISFNVLMVHKRSHTGE--------R 144
Query: 675 RGQCLICRLIFPQI-MLNNHIKTHIDH--IQCNIC 770
QC C F Q L HIK H +C++C
Sbjct: 145 PFQCNQCGASFTQKGNLLRHIKLHTGEKPFKCHLC 179
>sp|P39413|AEF1_DROME Adult enhancer factor 1 (AEF-1)
Length = 308
Score = 35.8 bits (81), Expect = 0.14
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 21/116 (18%)
Frame = +3
Query: 462 ICNKRNIDQINNLYENVKITKYVDPKASTSATAAQYDCHICGSFSTDQYSEFYTHLSIHN 641
+C++R Q++ L +VKI P Y C++C + Q S HL IH
Sbjct: 188 VCDRR-FRQLSTLTNHVKIHTGEKP----------YKCNVCDK-TFRQSSTLTNHLKIHT 235
Query: 642 NE------MCRKKQSQ--------------KRGQCLICRLIFPQIM-LNNHIKTHI 746
E C K Q K +C+IC+ F Q LNNHIK H+
Sbjct: 236 GEKPYNCNFCPKHFRQLSTLANHVKIHTGEKPFECVICKKQFRQSSTLNNHIKIHV 291
>sp|P48906|NU2M_PICCA NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 567
Score = 34.7 bits (78), Expect = 0.31
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +1
Query: 403 NYYSMKIYIYPMKKLIKLWIFAIKEILIKLIICTRMLKLQNTSIRKLQQVQRLHNMTVTY 582
N + IYI+ L KL IF I I + LI+ +L + T + K+Q +N+++
Sbjct: 69 NNNDLNIYIF--NDLYKLNIFNIYIIFLLLIVIISLLSINTTYLTKIQIKNNNNNISIGK 126
Query: 583 VDHFLLINI 609
D+++ +NI
Sbjct: 127 SDNYIELNI 135
>sp|P47043|ZAP1_YEAST Zinc-responsive transcriptional regulator ZAP1
Length = 880
Score = 33.5 bits (75), Expect = 0.69
Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +3
Query: 567 YDCHICGS-FSTDQYSEFYTHLSIHNNEMCRKKQSQKRGQCLICRLIFPQIM-LNNHIKT 740
Y CHIC F+ S H+ H E K QC IC F + L+ HIKT
Sbjct: 796 YKCHICNKKFAIS--SSLKIHIRTHTGE--------KPLQCKICGKRFNESSNLSKHIKT 845
Query: 741 HIDHIQCNICKE 776
H +C+ C +
Sbjct: 846 HQKKYKCSDCSK 857
>sp|P12577|L_PI3H4 Large structural protein (L protein) (Transcriptase) (Replicase)
[Includes: RNA-directed RNA polymerase ; mRNA
(guanine-N(7)-)-methyltransferase ; mRNA
guanylyltransferase ]
Length = 2233
Score = 33.1 bits (74), Expect = 0.90
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +3
Query: 381 NSMFDEKELLFD--EDI--YLPDEEVDKIMDICNKRNIDQINNLYENVKITKYVDPKAST 548
N + E EL+F+ E I +L + +DKI+DI NK ID+I ++ + + +AS
Sbjct: 314 NHVLSEMELIFESRESIKEFLSVDYIDKILDIFNKSTIDEIAEIFSFFRTFGHPPLEASI 373
Query: 549 SA 554
+A
Sbjct: 374 AA 375
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1
Length = 1328
Score = 32.3 bits (72), Expect = 1.5
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 14/97 (14%)
Frame = +3
Query: 297 MDERKDLAIEAEIDKIMNNIDIETVIDENSMFDEKELLFDED---IYLP-------DEEV 446
+DE++ E+D + ++D + ID N++ + E F +D +Y P DEEV
Sbjct: 1189 IDEKEQNLEGTELDPSLQSLDTDYPIDTNALSLDHEQGFSDDSDSVYEPSSPIEEGDEEV 1248
Query: 447 D----KIMDICNKRNIDQINNLYENVKITKYVDPKAS 545
D I++ N +++ Q ++ + K T Y P S
Sbjct: 1249 DGQRKDILNFMNSQSLTQTGSVPKR-KSTSYTRPSKS 1284
>sp|Q9P2J8|ZN624_HUMAN Zinc finger protein 624
Length = 739
Score = 32.3 bits (72), Expect = 1.5
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = +3
Query: 567 YDCHICGSFSTDQYSEFYTHLSIHNNEMCRKKQSQKRGQCLICRLIFPQIMLNNHIKTHI 746
Y+C+ CG + Q S H IH E + K +C + +M++ I T
Sbjct: 178 YECNECGK-TFSQPSYLSQHKKIHTGE-----KPYKCNECGKAFIASSSLMVHQRIHTKE 231
Query: 747 DHIQCNICKEFVSQ 788
QCN+C + SQ
Sbjct: 232 KPYQCNVCGKSFSQ 245
>sp|Q8IBS5|CDPK4_PLAF7 Calcium-dependent protein kinase 4
Length = 528
Score = 32.0 bits (71), Expect = 2.0
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 267 KEITFTKLIAMDERKDLAIEAEIDKIMNNIDIETVIDENSMFDEKELL---FDEDIYLPD 437
KE+ K + + AIE E+D+I+N+ID +D+N + E L D + L
Sbjct: 406 KELLKLKGEDTSDLDNAAIEYEVDQILNSID----LDQNGYIEYSEFLTVSIDRKLLLST 461
Query: 438 EEVDKIMDICNKRNIDQIN 494
E ++K + +K +I+
Sbjct: 462 ERLEKAFKLFDKDGSGKIS 480
>sp|Q06730|ZN33A_HUMAN Zinc finger protein 33A (Zinc finger protein KOX31) (HA0946)
Length = 810
Score = 31.6 bits (70), Expect = 2.6
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +3
Query: 567 YDCHICGSFSTDQYSEFYTHLSIHNNEMCRKKQSQKRGQCLIC-RLIFPQIMLNNHIKTH 743
Y+C+ CG F + S L++H+ R +K QC C ++ + + L H ++H
Sbjct: 692 YECNECGKFFRHKSS-----LTVHH----RAHTGEKSCQCNECGKIFYRKSELAQHQRSH 742
Query: 744 IDH--IQCNICKEFVSQ 788
+CN C++ SQ
Sbjct: 743 TGEKPYECNTCRKTFSQ 759
>sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1a (Chromatin modifying protein
1a) (CHMP1a)
Length = 196
Score = 31.6 bits (70), Expect = 2.6
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 288 LIAMDERKDLAIEAEIDKIMNNIDIETVIDENSMFDEKELLFDEDIYLPDEEVDKIMDIC 467
L +MD +K A+ + D+ + N+D+ T + E+SM L P E+VD ++
Sbjct: 100 LSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLT------TPQEQVDNLIVQI 153
Query: 468 NKRN----IDQINNL 500
+ N +DQ+N L
Sbjct: 154 AEENGLEVMDQLNQL 168
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,090,919
Number of Sequences: 369166
Number of extensions: 1468949
Number of successful extensions: 4371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4367
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)