Planaria EST Database


DrC_02656

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02656
         (900 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41453|LEF3_NPVAC  Late expression factor 3                     32   2.4  
sp|P40454|YIP3_YEAST  Hypothetical 45.1 kDa protein in IMP2-...    31   5.4  
>sp|P41453|LEF3_NPVAC Late expression factor 3
          Length = 385

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +3

Query: 654 DINFILQFV--GENMEMRLSDFCRHQNFSGLVIYYSSNIVNTLKNWILTRKELLEAKCFP 827
           DIN + +++   EN    +      Q F+G  +Y + N+VN+      TR EL EAK   
Sbjct: 191 DINEVFKYLKDNENQIFTIYSIKCQQIFNGSNVYMNWNVVNS------TRIELCEAK--- 241

Query: 828 ISSKSFNNVTETTNKTDDTSGSH 896
             S++++N+   TN   + S S+
Sbjct: 242 -ESEAYSNLQNCTNAKINISRSN 263
>sp|P40454|YIP3_YEAST Hypothetical 45.1 kDa protein in IMP2-DNA43 intergenic region
          Length = 393

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -1

Query: 426 IKDYKK*KFYLEKIRFIILTNRFVKQMQFSVFSGHVPVIYEKA---P*ISFICKHKTLYF 256
           +++YK   FY + I FI        +++   F  H P++Y+ A   P  S +CK     +
Sbjct: 239 VREYKDTNFYCQGINFI-------NEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMY 291

Query: 255 IVESYESFQI 226
            VE  + F +
Sbjct: 292 SVEVLKKFPV 301
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,089,623
Number of Sequences: 369166
Number of extensions: 1641890
Number of successful extensions: 3893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3892
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)