Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02656
(900 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41453|LEF3_NPVAC Late expression factor 3 32 2.4
sp|P40454|YIP3_YEAST Hypothetical 45.1 kDa protein in IMP2-... 31 5.4
>sp|P41453|LEF3_NPVAC Late expression factor 3
Length = 385
Score = 32.0 bits (71), Expect = 2.4
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +3
Query: 654 DINFILQFV--GENMEMRLSDFCRHQNFSGLVIYYSSNIVNTLKNWILTRKELLEAKCFP 827
DIN + +++ EN + Q F+G +Y + N+VN+ TR EL EAK
Sbjct: 191 DINEVFKYLKDNENQIFTIYSIKCQQIFNGSNVYMNWNVVNS------TRIELCEAK--- 241
Query: 828 ISSKSFNNVTETTNKTDDTSGSH 896
S++++N+ TN + S S+
Sbjct: 242 -ESEAYSNLQNCTNAKINISRSN 263
>sp|P40454|YIP3_YEAST Hypothetical 45.1 kDa protein in IMP2-DNA43 intergenic region
Length = 393
Score = 30.8 bits (68), Expect = 5.4
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -1
Query: 426 IKDYKK*KFYLEKIRFIILTNRFVKQMQFSVFSGHVPVIYEKA---P*ISFICKHKTLYF 256
+++YK FY + I FI +++ F H P++Y+ A P S +CK +
Sbjct: 239 VREYKDTNFYCQGINFI-------NEVKMGPFEEHSPILYDIAVTVPRWSKVCKGLLKMY 291
Query: 255 IVESYESFQI 226
VE + F +
Sbjct: 292 SVEVLKKFPV 301
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,089,623
Number of Sequences: 369166
Number of extensions: 1641890
Number of successful extensions: 3893
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3892
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)