Planaria EST Database


DrC_02647

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02647
         (462 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O04722|ST21_ARATH  Sulfate transporter 2.1 (AST68)              29   5.8  
sp|Q8TS66|COBS_METAC  Cobalamin synthase                           29   5.8  
sp|P53392|SUT2_STYHA  High affinity sulphate transporter 2         28   9.9  
sp|P53391|SUT1_STYHA  High affinity sulphate transporter 1         28   9.9  
sp|Q92G97|NUOL_RICCN  NADH-quinone oxidoreductase chain L (N...    28   9.9  
>sp|O04722|ST21_ARATH Sulfate transporter 2.1 (AST68)
          Length = 677

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 368 IKKIYFFALTGAFFGVFLGATFLGVALAFAI 276
           + K  F AL GAFFGV   +  +G+ +A  I
Sbjct: 486 VDKFDFLALIGAFFGVLFASVEIGLLVAVVI 516
>sp|Q8TS66|COBS_METAC Cobalamin synthase
          Length = 278

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 371 LIKKIYFFALTGAFFGVFLGA 309
           L+KKIYF+ + GA  G+ +GA
Sbjct: 30  LMKKIYFYPVVGAVLGLLIGA 50
>sp|P53392|SUT2_STYHA High affinity sulphate transporter 2
          Length = 662

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 368 IKKIYFFALTGAFFGVFLGATFLGVALAFAI 276
           I K  F A  GAFFGV   +  +G+ +A AI
Sbjct: 471 IDKFDFVACMGAFFGVIFKSVEIGLLIAVAI 501
>sp|P53391|SUT1_STYHA High affinity sulphate transporter 1
          Length = 667

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 368 IKKIYFFALTGAFFGVFLGATFLGVALAFAI 276
           I K  F A  GAFFGV   +  +G+ +A AI
Sbjct: 476 IDKFDFVACMGAFFGVIFKSVEIGLLIAVAI 506
>sp|Q92G97|NUOL_RICCN NADH-quinone oxidoreductase chain L (NADH dehydrogenase I, chain L)
           (NDH-1, chain L)
          Length = 657

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 101 IDFLSLFLFGFLIVLFSDDFLETF 30
           + FLSLF F  L+++ SD+FL+ F
Sbjct: 119 LSFLSLFTFFMLMLVSSDNFLQLF 142
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,805,308
Number of Sequences: 369166
Number of extensions: 314898
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)