Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02647
(462 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O04722|ST21_ARATH Sulfate transporter 2.1 (AST68) 29 5.8
sp|Q8TS66|COBS_METAC Cobalamin synthase 29 5.8
sp|P53392|SUT2_STYHA High affinity sulphate transporter 2 28 9.9
sp|P53391|SUT1_STYHA High affinity sulphate transporter 1 28 9.9
sp|Q92G97|NUOL_RICCN NADH-quinone oxidoreductase chain L (N... 28 9.9
>sp|O04722|ST21_ARATH Sulfate transporter 2.1 (AST68)
Length = 677
Score = 28.9 bits (63), Expect = 5.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 368 IKKIYFFALTGAFFGVFLGATFLGVALAFAI 276
+ K F AL GAFFGV + +G+ +A I
Sbjct: 486 VDKFDFLALIGAFFGVLFASVEIGLLVAVVI 516
>sp|Q8TS66|COBS_METAC Cobalamin synthase
Length = 278
Score = 28.9 bits (63), Expect = 5.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 371 LIKKIYFFALTGAFFGVFLGA 309
L+KKIYF+ + GA G+ +GA
Sbjct: 30 LMKKIYFYPVVGAVLGLLIGA 50
>sp|P53392|SUT2_STYHA High affinity sulphate transporter 2
Length = 662
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 368 IKKIYFFALTGAFFGVFLGATFLGVALAFAI 276
I K F A GAFFGV + +G+ +A AI
Sbjct: 471 IDKFDFVACMGAFFGVIFKSVEIGLLIAVAI 501
>sp|P53391|SUT1_STYHA High affinity sulphate transporter 1
Length = 667
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 368 IKKIYFFALTGAFFGVFLGATFLGVALAFAI 276
I K F A GAFFGV + +G+ +A AI
Sbjct: 476 IDKFDFVACMGAFFGVIFKSVEIGLLIAVAI 506
>sp|Q92G97|NUOL_RICCN NADH-quinone oxidoreductase chain L (NADH dehydrogenase I, chain L)
(NDH-1, chain L)
Length = 657
Score = 28.1 bits (61), Expect = 9.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 101 IDFLSLFLFGFLIVLFSDDFLETF 30
+ FLSLF F L+++ SD+FL+ F
Sbjct: 119 LSFLSLFTFFMLMLVSSDNFLQLF 142
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,805,308
Number of Sequences: 369166
Number of extensions: 314898
Number of successful extensions: 901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)