Planaria EST Database


DrC_02643

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02643
         (680 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q88QP1|RPOC_PSEPK  DNA-directed RNA polymerase beta' chai...    39   0.010
sp|P19176|RPOC_PSEPU  DNA-directed RNA polymerase beta' chai...    38   0.021
sp|Q9HWC9|RPOC_PSEAE  DNA-directed RNA polymerase beta' chai...    37   0.048
sp|Q889X7|RPOC_PSESM  DNA-directed RNA polymerase beta' chai...    35   0.14 
sp|Q87KQ5|RPOC_VIBPA  DNA-directed RNA polymerase beta' chai...    33   0.90 
sp|Q9LW85|MFP1_ARATH  MAR binding filament-like protein 1          32   1.5  
sp|Q8XUZ9|RPOC_RALSO  DNA-directed RNA polymerase beta' chai...    30   4.5  
sp|Q7MGS0|RPOC_VIBVY  DNA-directed RNA polymerase beta' chai...    30   7.6  
sp|Q09780|KIME_SCHPO  Putative mevalonate kinase (MK)              29   10.0 
sp|P07207|NOTCH_DROME  Neurogenic locus Notch protein precursor    29   10.0 
>sp|Q88QP1|RPOC_PSEPK DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1399

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 25/119 (21%), Positives = 53/119 (44%)
 Frame = +3

Query: 3   NLSGDEEFDDDMKEFIKPRRMGKRSLNNMLEEWSNEQIIDEDLIEAVNTKLTDRLKSTCQ 182
           N  G+     D++E  +  R G+ +L+  ++   NE + + D     NT++ D       
Sbjct: 519 NAKGEGRVFADLQEVDRVFRAGEAALHAKIKVRINETVKERDGSVVKNTRIVDT------ 572

Query: 183 KVTENECTCRRLVCFDESVCKLPVDATKQPLLQSNTNNILNKTFQEIRCRQTIIYDQRL 359
                  T  R + F      LP D   QP+ +   + ++N+ ++ +  ++T+I+  +L
Sbjct: 573 -------TVGRALLFQVVPAGLPYDVVNQPMKKKAISKLINQCYRVVGLKETVIFADQL 624
>sp|P19176|RPOC_PSEPU DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1398

 Score = 38.1 bits (87), Expect = 0.021
 Identities = 25/119 (21%), Positives = 53/119 (44%)
 Frame = +3

Query: 3   NLSGDEEFDDDMKEFIKPRRMGKRSLNNMLEEWSNEQIIDEDLIEAVNTKLTDRLKSTCQ 182
           N  G+     D++E  +  R G+ +L+  ++   NE + + D     NT++ D       
Sbjct: 519 NAKGEGRVFADLQEVDRVFRAGEAALHAKIKVRINETVKERDGSVVKNTRIVDT------ 572

Query: 183 KVTENECTCRRLVCFDESVCKLPVDATKQPLLQSNTNNILNKTFQEIRCRQTIIYDQRL 359
                  T  R + F      LP D   QP+ +   + ++N+ ++ +  ++T+I+  +L
Sbjct: 573 -------TVGRALLFQVVPGGLPYDVVNQPMKKKAISKLINQCYRVVGLKETVIFADQL 624
>sp|Q9HWC9|RPOC_PSEAE DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1399

 Score = 37.0 bits (84), Expect = 0.048
 Identities = 27/119 (22%), Positives = 51/119 (42%)
 Frame = +3

Query: 3   NLSGDEEFDDDMKEFIKPRRMGKRSLNNMLEEWSNEQIIDEDLIEAVNTKLTDRLKSTCQ 182
           N  G+     D++E  +  R G+ SL+  ++   NE+I  ED     NT++ D       
Sbjct: 519 NAKGEGMAFADLQEVDRAYRSGQASLHARVKVRINEKIKGEDGQLTANTRIVD------- 571

Query: 183 KVTENECTCRRLVCFDESVCKLPVDATKQPLLQSNTNNILNKTFQEIRCRQTIIYDQRL 359
                  T  R + F      LP D   Q + +   + ++N  ++ +  + T+I+  +L
Sbjct: 572 ------TTVGRALLFQVVPAGLPFDVVNQSMKKKAISKLINHCYRVVGLKDTVIFADQL 624
>sp|Q889X7|RPOC_PSESM DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1399

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 24/119 (20%), Positives = 52/119 (43%)
 Frame = +3

Query: 3   NLSGDEEFDDDMKEFIKPRRMGKRSLNNMLEEWSNEQIIDEDLIEAVNTKLTDRLKSTCQ 182
           N  G+     D++E  +  R G+ +L+  ++   +E + D D     NT++ D       
Sbjct: 519 NAKGEGRVFADLQEVDRVFRAGEAALHAKVKVRIHETVNDRDGGSVKNTRIVDT------ 572

Query: 183 KVTENECTCRRLVCFDESVCKLPVDATKQPLLQSNTNNILNKTFQEIRCRQTIIYDQRL 359
                  T  R + F      L  D   QP+ +   + ++N+ ++ +  ++T+I+  +L
Sbjct: 573 -------TVGRALLFQVVPAGLSYDVVNQPMKKKAISKLINQCYRVVGLKETVIFADQL 624
>sp|Q87KQ5|RPOC_VIBPA DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1400

 Score = 32.7 bits (73), Expect = 0.90
 Identities = 24/119 (20%), Positives = 49/119 (41%)
 Frame = +3

Query: 3   NLSGDEEFDDDMKEFIKPRRMGKRSLNNMLEEWSNEQIIDEDLIEAVNTKLTDRLKSTCQ 182
           N+ G+  +     E  K  R  +  L+  ++    E ++DED      TK+ D       
Sbjct: 519 NVKGEGMYLSGPAEAEKAYRTKQAELHARVKVRITETVVDEDGNSTTETKMVDT------ 572

Query: 183 KVTENECTCRRLVCFDESVCKLPVDATKQPLLQSNTNNILNKTFQEIRCRQTIIYDQRL 359
                  T  R + +      LP     Q L +   +N+LN+ ++++  + T+I+  ++
Sbjct: 573 -------TVGRAMLWQIVPAGLPYSIVNQKLGKKQISNLLNEAYRKLGLKDTVIFADQI 624
>sp|Q9LW85|MFP1_ARATH MAR binding filament-like protein 1
          Length = 727

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
 Frame = +3

Query: 123 EDLIEAVNTKLTDRLKSTCQKVTENECTCRRLVCFDESVCKLPVDATKQPLLQSNTNNIL 302
           E+ IE++  +L DR ++   K  + E   +     ++   K  V+  K+  L S  N + 
Sbjct: 156 EETIESLKNQLKDRERALVLKEKDFEAKLQH----EQEERKKEVEKAKEEQL-SLINQLN 210

Query: 303 NKTFQEIRCRQTIIYDQRLCECKKYTIESIKQATQSVGTDSR------NKKLDSIQSVGD 464
           +         + +  +++LCE  K  IES++ +    G D         +KLD ++ + D
Sbjct: 211 SAKDLVTELGRELSSEKKLCEKLKDQIESLENSLSKAGEDKEALETKLREKLDLVEGLQD 270

Query: 465 RFRI 476
           R  +
Sbjct: 271 RINL 274
>sp|Q8XUZ9|RPOC_RALSO DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1409

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
 Frame = +3

Query: 78  LNNMLEEWSNEQIIDEDLIEAVNTKLT---------DRLKSTCQKVTENECTCRRLVCFD 230
           ++ ++  + N+++   +L   VN ++T         D       K+T    T  R +  +
Sbjct: 531 ISEVIRAYENKEV---ELASRVNVRITEYDLVNPEADGDARFAPKITLQATTVGRAILSE 587

Query: 231 ESVCKLPVDATKQPLLQSNTNNILNKTFQEIRCRQTIIYDQRLCE 365
                LP     +PL +   + ++N  F++   R+T+I+  +L +
Sbjct: 588 ILPKGLPFSVLNKPLKKKEISRLINTAFRKCGLRETVIFADKLLQ 632
>sp|Q7MGS0|RPOC_VIBVY DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
 sp|Q8DD19|RPOC_VIBVU DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)
          Length = 1400

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 24/119 (20%), Positives = 48/119 (40%)
 Frame = +3

Query: 3   NLSGDEEFDDDMKEFIKPRRMGKRSLNNMLEEWSNEQIIDEDLIEAVNTKLTDRLKSTCQ 182
           N  G+  +     E  K  R    +L+  ++    E ++DED      TK+ D       
Sbjct: 519 NAKGEGMYLAGPAEAEKAYRTKTAALHARVKVRITETVVDEDGHSTTETKMVDT------ 572

Query: 183 KVTENECTCRRLVCFDESVCKLPVDATKQPLLQSNTNNILNKTFQEIRCRQTIIYDQRL 359
                  T  R + +      LP     Q L +   +N+LN+ ++++  + T+I+  ++
Sbjct: 573 -------TIGRAMLWQIVPKGLPFSIVNQKLGKKQISNLLNEAYRKLGLKDTVIFADQI 624
>sp|Q09780|KIME_SCHPO Putative mevalonate kinase (MK)
          Length = 404

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
 Frame = +3

Query: 36  MKEFIKPRRMGKRSLNNMLEEWSNEQIIDEDLIEAVNTKLTDRLKSTCQKVTENECTCRR 215
           MKEF+KP    K +L+ M+ +                TK     K   Q V E +    R
Sbjct: 217 MKEFLKP----KDTLSVMITD----------------TKQPKSTKKLVQGVFELK---ER 253

Query: 216 LVCFDESVCKLPVDATKQPLLQSNTNNILNKTFQEIRCRQTIIYDQRLCEC---KKYTIE 386
           L    +S+       +K  +L   + +  N + +++   + I+ +Q+L EC     Y+I+
Sbjct: 254 LPTVIDSIIDAIDGISKSAVLALTSESDKNSSAKKLG--EFIVLNQKLLECLGVSHYSID 311

Query: 387 SIKQATQSVG 416
            + QAT+S+G
Sbjct: 312 RVLQATKSIG 321
>sp|P07207|NOTCH_DROME Neurogenic locus Notch protein precursor
          Length = 2703

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
 Frame = +3

Query: 174 TCQKVTENE---CTCRRLVCFDESVCKLPVDATKQPLLQSNTNNILNKTFQEIRCRQTII 344
           TCQ    N     +C+  + FDES+C++ V      +   N      KT +E  C     
Sbjct: 110 TCQVTFRNGRPGISCKCPLGFDESLCEIAVPNACDHVTCLNGGTCQLKTLEEYTCACANG 169

Query: 345 YDQRLCECKKYTIES 389
           Y    CE K     S
Sbjct: 170 YTGERCETKNLCASS 184
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,699,830
Number of Sequences: 369166
Number of extensions: 1257933
Number of successful extensions: 3246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3243
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)