Planaria EST Database


DrC_02631

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02631
         (682 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P37662|YHJX_ECOLI  Inner membrane protein yhjX                  50   5e-06
sp|Q51330|OXLT_OXAFO  Oxalate:formate antiporter (OFA) (Oxal...    41   0.003
sp|Q96TW9|MCH1_HANAN  Probable transporter MCH1                    37   0.063
sp|P58120|PMRA_LACLA  Multi-drug resistance efflux pump pmrA...    35   0.14 
sp|P91682|SMO_DROME  Smoothened protein precursor (dSMO) (SM...    35   0.14 
sp|Q6FWD4|MCH1_CANGA  Probable transporter MCH1                    33   0.53 
sp|Q09852|YAEC_SCHPO  Putative inorganic phosphate transport...    33   0.90 
sp|Q6CGU8|MCH1_YARLI  Probable transporter MCH1                    32   2.0  
sp|P44610|Y281_HAEIN  Hypothetical metabolite transport prot...    31   2.6  
sp|Q8CPC0|MPRF_STAES  Probable lysylphosphatidylglycerol syn...    31   2.6  
>sp|P37662|YHJX_ECOLI Inner membrane protein yhjX
          Length = 402

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 32/115 (27%), Positives = 56/115 (48%)
 Frame = +3

Query: 9   GRLVWGRLLDVVPYKRMMTGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCLA 188
           GRLV G L D +   R++T   ++  + M +                +F  +  + F   
Sbjct: 266 GRLVLGILSDKIARIRVITIGQVISLVGMAALLFAPL------NAVTFFAAIACVAFNFG 319

Query: 189 GSFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFSLLLKKIMYGGLFI 353
           G+  +FP++ S+ FG  N+A  YGV++ G+ I SI  ++I SL      +GG ++
Sbjct: 320 GTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIASL------FGGFYV 368
>sp|Q51330|OXLT_OXAFO Oxalate:formate antiporter (OFA) (Oxalate:formate antiport protein)
           (Oxalate:formate exchange protein)
          Length = 418

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 27/131 (20%), Positives = 56/131 (42%)
 Frame = +3

Query: 6   GGRLVWGRLLDVVPYKRMMTGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCL 185
           G R  WG + D +   + M+ +  + ++ +  F   + +         +   + + FF  
Sbjct: 270 GCRPFWGFVSDKIGRYKTMSVVFGINAVVLALFPTIAALGD-----VAFIAMLAIAFFTW 324

Query: 186 AGSFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFSLLLKKIMYGGLFIIATV 365
            GS+A+FP+  S  FG    A  YG  ++  A +SI    + + +     +   F+I  +
Sbjct: 325 GGSYALFPSTNSDIFGTAYSARNYGFFWAAKATASIFGGGLGAAIATNFGWNTAFLITAI 384

Query: 366 SAMTSLVLTQF 398
           ++  +  L  F
Sbjct: 385 TSFIAFALATF 395
>sp|Q96TW9|MCH1_HANAN Probable transporter MCH1
          Length = 489

 Score = 36.6 bits (83), Expect = 0.063
 Identities = 30/125 (24%), Positives = 52/125 (41%)
 Frame = +3

Query: 12  RLVWGRLLDVVPYKRMMTGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCLAG 191
           RL  G L D +     ++   +L+SI +  F+    + +    +  Y+I   L  F   G
Sbjct: 313 RLSLGALSDFLVTNYQISRSWLLLSIIVLGFFTQIFIATSTFVKDQYYIISALSGFSYGG 372

Query: 192 SFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFSLLLKKIMYGGLFIIATVSA 371
            F ++PT+    +G +     +G      AI S    ++F L+       G+F  +T   
Sbjct: 373 LFTLYPTVIFSIWGPEIFGSAWGSFMIAPAIGSTTFGMVFGLVYDSAC--GVFAESTTGN 430

Query: 372 MTSLV 386
             SLV
Sbjct: 431 CVSLV 435
>sp|P58120|PMRA_LACLA Multi-drug resistance efflux pump pmrA homolog
          Length = 405

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 14/142 (9%)
 Frame = +3

Query: 18  VWGRLLDVVPYKRMMTGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCLAGSF 197
           +WGRL D    K MM   +I+M++TMG      NV            W  L    L G F
Sbjct: 69  IWGRLADEHGRKVMMVRASIVMTLTMGGIAFAPNV------------WWLLGLRLLMGFF 116

Query: 198 AMF-----PTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFSLLLKKIMYG------- 341
           + +       I SQ+  +K          SGYA+ ++ +A++   L+   + G       
Sbjct: 117 SGYIPNSTAMIASQAPKDK----------SGYALGTLATAMVSGTLIGPSLGGLLAEWFG 166

Query: 342 --GLFIIATVSAMTSLVLTQFF 401
              +F+I       + +LT FF
Sbjct: 167 MANVFLIVGALLALATLLTIFF 188
>sp|P91682|SMO_DROME Smoothened protein precursor (dSMO) (SMOH) (Smooth)
          Length = 1036

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
 Frame = +3

Query: 39  VVPYKRMMTGLTILMSITMGSFY-GCSNVESQVGRQAMYFIWVCLLFFCLAGSFAMFPTI 215
           V+ Y  +  G+   + +T    +    +V+ ++ ++  YF  V       A S  +  TI
Sbjct: 344 VLVYYFLTAGMVWFVFLTYAWHWRAMGHVQDRIDKKGSYFHLV-------AWSLPLVLTI 396

Query: 216 TSQSFGNKNMAIIYGVVFSGYAISSIMSALIFSLLLKKIMYGGLFI 353
           T+ +F   +   I G+ F GY   S+ + L+   L   I+ GG FI
Sbjct: 397 TTMAFSEVDGNSIVGICFVGYINHSMRAGLLLGPLCGVILIGGYFI 442
>sp|Q6FWD4|MCH1_CANGA Probable transporter MCH1
          Length = 489

 Score = 33.5 bits (75), Expect = 0.53
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 189 GSFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFS 314
           G F ++PTIT   +G K     YG +    A+ S +S LI++
Sbjct: 400 GLFTIYPTITLMVWGEKMFGTAYGTLMIAPALGSALSCLIYA 441
>sp|Q09852|YAEC_SCHPO Putative inorganic phosphate transporter C23D3.12
          Length = 559

 Score = 32.7 bits (73), Expect = 0.90
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 117 NVESQVGRQAMYFIWVCLLFFCLAGSFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIM 296
           ++ + +G+    F W  LL   + G + M  TITS+         +  +VFS     ++ 
Sbjct: 141 SIPTPLGKMMWIFAWRWLLGLGIGGDYPMSATITSERSLLSRRGTLLSIVFSFQGFGTLA 200

Query: 297 SALIFSLLL 323
            A++  +LL
Sbjct: 201 GAIVTIILL 209
>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1
          Length = 486

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 144 AMYFIWVCLLF-FCLAGSFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFS 314
           A YF  V ++  F    SF + PTI ++ +G  N+  I+G      A+ S+   L+F+
Sbjct: 372 AKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGLLFA 429
>sp|P44610|Y281_HAEIN Hypothetical metabolite transport protein HI0281
          Length = 438

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
 Frame = +3

Query: 63  TGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCLAGSFAMFPTITSQSFGNKN 242
           TGL ++ +I  G F   S   +    +  + IWV +    L  +  +F         N  
Sbjct: 287 TGLLLISAIVFGIFISISGFYADKIGRRKWLIWVTIAIGVLGLAMPLF-------LENGT 339

Query: 243 MAIIYGVVFSGYAISSI----MSALIFSLLLKKIMYGGL--------FIIATVSAMTSLV 386
              ++  +  G AI  +    M+AL+  L   ++ Y G          I AT++AM SL 
Sbjct: 340 PVSVFAFLVIGMAIMGMTFGPMAALLPELFPTEVRYSGASLAYNLASIIGATIAAMISLK 399

Query: 387 LTQFF 401
           +   F
Sbjct: 400 INASF 404
>sp|Q8CPC0|MPRF_STAES Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
           (Multiple peptide resistance factor)
          Length = 840

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
 Frame = +3

Query: 57  MMTGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCLAGSFAMFPTITSQSFGN 236
           M+TGL++L  + +   +  S++  ++     +  W+  +       F  +         N
Sbjct: 137 MLTGLSLLSILVVLRIFNASHMIDEIS----WVRWILYIVALFLPIFIFYTVARPVDRNN 192

Query: 237 KNMAIIYGVV----FSGYAISSIMSALIFSLLLKKIMYGGLFIIATVSAMTSLV 386
           + M +   VV    +   A     +ALI  + +  + + G+F+IA +S + S +
Sbjct: 193 RYMGVYCTVVSCVEWMAAATVLYFAALIVDIHISFMTFVGIFVIAALSGLVSFI 246
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,658,822
Number of Sequences: 369166
Number of extensions: 1411335
Number of successful extensions: 3699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3693
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)