Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02631
(682 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37662|YHJX_ECOLI Inner membrane protein yhjX 50 5e-06
sp|Q51330|OXLT_OXAFO Oxalate:formate antiporter (OFA) (Oxal... 41 0.003
sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 37 0.063
sp|P58120|PMRA_LACLA Multi-drug resistance efflux pump pmrA... 35 0.14
sp|P91682|SMO_DROME Smoothened protein precursor (dSMO) (SM... 35 0.14
sp|Q6FWD4|MCH1_CANGA Probable transporter MCH1 33 0.53
sp|Q09852|YAEC_SCHPO Putative inorganic phosphate transport... 33 0.90
sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 32 2.0
sp|P44610|Y281_HAEIN Hypothetical metabolite transport prot... 31 2.6
sp|Q8CPC0|MPRF_STAES Probable lysylphosphatidylglycerol syn... 31 2.6
>sp|P37662|YHJX_ECOLI Inner membrane protein yhjX
Length = 402
Score = 50.1 bits (118), Expect = 5e-06
Identities = 32/115 (27%), Positives = 56/115 (48%)
Frame = +3
Query: 9 GRLVWGRLLDVVPYKRMMTGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCLA 188
GRLV G L D + R++T ++ + M + +F + + F
Sbjct: 266 GRLVLGILSDKIARIRVITIGQVISLVGMAALLFAPL------NAVTFFAAIACVAFNFG 319
Query: 189 GSFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFSLLLKKIMYGGLFI 353
G+ +FP++ S+ FG N+A YGV++ G+ I SI ++I SL +GG ++
Sbjct: 320 GTITVFPSLVSEFFGLNNLAKNYGVIYLGFGIGSICGSIIASL------FGGFYV 368
>sp|Q51330|OXLT_OXAFO Oxalate:formate antiporter (OFA) (Oxalate:formate antiport protein)
(Oxalate:formate exchange protein)
Length = 418
Score = 40.8 bits (94), Expect = 0.003
Identities = 27/131 (20%), Positives = 56/131 (42%)
Frame = +3
Query: 6 GGRLVWGRLLDVVPYKRMMTGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCL 185
G R WG + D + + M+ + + ++ + F + + + + + FF
Sbjct: 270 GCRPFWGFVSDKIGRYKTMSVVFGINAVVLALFPTIAALGD-----VAFIAMLAIAFFTW 324
Query: 186 AGSFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFSLLLKKIMYGGLFIIATV 365
GS+A+FP+ S FG A YG ++ A +SI + + + + F+I +
Sbjct: 325 GGSYALFPSTNSDIFGTAYSARNYGFFWAAKATASIFGGGLGAAIATNFGWNTAFLITAI 384
Query: 366 SAMTSLVLTQF 398
++ + L F
Sbjct: 385 TSFIAFALATF 395
>sp|Q96TW9|MCH1_HANAN Probable transporter MCH1
Length = 489
Score = 36.6 bits (83), Expect = 0.063
Identities = 30/125 (24%), Positives = 52/125 (41%)
Frame = +3
Query: 12 RLVWGRLLDVVPYKRMMTGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCLAG 191
RL G L D + ++ +L+SI + F+ + + + Y+I L F G
Sbjct: 313 RLSLGALSDFLVTNYQISRSWLLLSIIVLGFFTQIFIATSTFVKDQYYIISALSGFSYGG 372
Query: 192 SFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFSLLLKKIMYGGLFIIATVSA 371
F ++PT+ +G + +G AI S ++F L+ G+F +T
Sbjct: 373 LFTLYPTVIFSIWGPEIFGSAWGSFMIAPAIGSTTFGMVFGLVYDSAC--GVFAESTTGN 430
Query: 372 MTSLV 386
SLV
Sbjct: 431 CVSLV 435
>sp|P58120|PMRA_LACLA Multi-drug resistance efflux pump pmrA homolog
Length = 405
Score = 35.4 bits (80), Expect = 0.14
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 14/142 (9%)
Frame = +3
Query: 18 VWGRLLDVVPYKRMMTGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCLAGSF 197
+WGRL D K MM +I+M++TMG NV W L L G F
Sbjct: 69 IWGRLADEHGRKVMMVRASIVMTLTMGGIAFAPNV------------WWLLGLRLLMGFF 116
Query: 198 AMF-----PTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFSLLLKKIMYG------- 341
+ + I SQ+ +K SGYA+ ++ +A++ L+ + G
Sbjct: 117 SGYIPNSTAMIASQAPKDK----------SGYALGTLATAMVSGTLIGPSLGGLLAEWFG 166
Query: 342 --GLFIIATVSAMTSLVLTQFF 401
+F+I + +LT FF
Sbjct: 167 MANVFLIVGALLALATLLTIFF 188
>sp|P91682|SMO_DROME Smoothened protein precursor (dSMO) (SMOH) (Smooth)
Length = 1036
Score = 35.4 bits (80), Expect = 0.14
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Frame = +3
Query: 39 VVPYKRMMTGLTILMSITMGSFY-GCSNVESQVGRQAMYFIWVCLLFFCLAGSFAMFPTI 215
V+ Y + G+ + +T + +V+ ++ ++ YF V A S + TI
Sbjct: 344 VLVYYFLTAGMVWFVFLTYAWHWRAMGHVQDRIDKKGSYFHLV-------AWSLPLVLTI 396
Query: 216 TSQSFGNKNMAIIYGVVFSGYAISSIMSALIFSLLLKKIMYGGLFI 353
T+ +F + I G+ F GY S+ + L+ L I+ GG FI
Sbjct: 397 TTMAFSEVDGNSIVGICFVGYINHSMRAGLLLGPLCGVILIGGYFI 442
>sp|Q6FWD4|MCH1_CANGA Probable transporter MCH1
Length = 489
Score = 33.5 bits (75), Expect = 0.53
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 189 GSFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFS 314
G F ++PTIT +G K YG + A+ S +S LI++
Sbjct: 400 GLFTIYPTITLMVWGEKMFGTAYGTLMIAPALGSALSCLIYA 441
>sp|Q09852|YAEC_SCHPO Putative inorganic phosphate transporter C23D3.12
Length = 559
Score = 32.7 bits (73), Expect = 0.90
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +3
Query: 117 NVESQVGRQAMYFIWVCLLFFCLAGSFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIM 296
++ + +G+ F W LL + G + M TITS+ + +VFS ++
Sbjct: 141 SIPTPLGKMMWIFAWRWLLGLGIGGDYPMSATITSERSLLSRRGTLLSIVFSFQGFGTLA 200
Query: 297 SALIFSLLL 323
A++ +LL
Sbjct: 201 GAIVTIILL 209
>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1
Length = 486
Score = 31.6 bits (70), Expect = 2.0
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 144 AMYFIWVCLLF-FCLAGSFAMFPTITSQSFGNKNMAIIYGVVFSGYAISSIMSALIFS 314
A YF V ++ F SF + PTI ++ +G N+ I+G A+ S+ L+F+
Sbjct: 372 AKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSFILALAVGSLGYGLLFA 429
>sp|P44610|Y281_HAEIN Hypothetical metabolite transport protein HI0281
Length = 438
Score = 31.2 bits (69), Expect = 2.6
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 12/125 (9%)
Frame = +3
Query: 63 TGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCLAGSFAMFPTITSQSFGNKN 242
TGL ++ +I G F S + + + IWV + L + +F N
Sbjct: 287 TGLLLISAIVFGIFISISGFYADKIGRRKWLIWVTIAIGVLGLAMPLF-------LENGT 339
Query: 243 MAIIYGVVFSGYAISSI----MSALIFSLLLKKIMYGGL--------FIIATVSAMTSLV 386
++ + G AI + M+AL+ L ++ Y G I AT++AM SL
Sbjct: 340 PVSVFAFLVIGMAIMGMTFGPMAALLPELFPTEVRYSGASLAYNLASIIGATIAAMISLK 399
Query: 387 LTQFF 401
+ F
Sbjct: 400 INASF 404
>sp|Q8CPC0|MPRF_STAES Probable lysylphosphatidylglycerol synthetase (LPG synthetase)
(Multiple peptide resistance factor)
Length = 840
Score = 31.2 bits (69), Expect = 2.6
Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Frame = +3
Query: 57 MMTGLTILMSITMGSFYGCSNVESQVGRQAMYFIWVCLLFFCLAGSFAMFPTITSQSFGN 236
M+TGL++L + + + S++ ++ + W+ + F + N
Sbjct: 137 MLTGLSLLSILVVLRIFNASHMIDEIS----WVRWILYIVALFLPIFIFYTVARPVDRNN 192
Query: 237 KNMAIIYGVV----FSGYAISSIMSALIFSLLLKKIMYGGLFIIATVSAMTSLV 386
+ M + VV + A +ALI + + + + G+F+IA +S + S +
Sbjct: 193 RYMGVYCTVVSCVEWMAAATVLYFAALIVDIHISFMTFVGIFVIAALSGLVSFI 246
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,658,822
Number of Sequences: 369166
Number of extensions: 1411335
Number of successful extensions: 3699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3693
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)