Planaria EST Database


DrC_02627

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02627
         (761 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35135|UBC4_LYCES  Ubiquitin-conjugating enzyme E2-17 kDa...   185   1e-46
sp|P62839|UB2D2_RAT  Ubiquitin-conjugating enzyme E2 D2 (Ubi...   184   2e-46
sp|P15731|UBC4_YEAST  Ubiquitin-conjugating enzyme E2 4 (Ubi...   184   2e-46
sp|P35132|UBC9_ARATH  Ubiquitin-conjugating enzyme E2-17 kDa...   184   2e-46
sp|P61080|UB2D1_MOUSE  Ubiquitin-conjugating enzyme E2 D1 (U...   183   4e-46
sp|P35131|UBC8_ARATH  Ubiquitin-conjugating enzyme E2-17 kDa...   182   7e-46
sp|P35133|UBCA_ARATH  Ubiquitin-conjugating enzyme E2-17 kDa...   182   7e-46
sp|P61078|UB2D3_RAT  Ubiquitin-conjugating enzyme E2 D3 (Ubi...   182   9e-46
sp|P15732|UBC5_YEAST  Ubiquitin-conjugating enzyme E2-16 kDa...   181   1e-45
sp|P35134|UBCB_ARATH  Ubiquitin-conjugating enzyme E2-17 kDa...   181   2e-45
>sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
           (Ubiquitin carrier protein)
          Length = 148

 Score =  185 bits (469), Expect = 1e-46
 Identities = 85/138 (61%), Positives = 99/138 (71%)
 Frame = -3

Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
           ELK L +DPPT CSAGP   D+F W A+I GP+DSPY  G+FL+SI FP DYPFKPP + 
Sbjct: 9   ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVA 68

Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
           F TK+FHPNIN +G ICLDILK QWSPALTISKVLLSICS              +A +YK
Sbjct: 69  FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 128

Query: 351 NDRKVFDRTARQWTEKYA 298
            DR  ++ TAR WT+KYA
Sbjct: 129 TDRAKYETTARSWTQKYA 146
>sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
           (Ubiquitin carrier protein D2) (Ubiquitin-conjugating
           enzyme E2-17 kDa 2) (E2(17)KB 2)
 sp|P62838|UB2D2_MOUSE Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
           (Ubiquitin carrier protein D2) (Ubiquitin-conjugating
           enzyme E2-17 kDa 2) (E2(17)KB 2)
 sp|P62837|UB2D2_HUMAN Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
           (Ubiquitin carrier protein D2) (Ubiquitin-conjugating
           enzyme E2-17 kDa 2) (E2(17)KB 2)
 sp|P62840|UB5B_XENLA Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
           (Ubiquitin carrier protein D2) (Xubc4)
          Length = 147

 Score =  184 bits (467), Expect = 2e-46
 Identities = 81/138 (58%), Positives = 102/138 (73%)
 Frame = -3

Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
           EL  L RDPP  CSAGP  +D+F W A+I GP+DSPY+ G+F L+I FP DYPFKPP + 
Sbjct: 9   ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA 68

Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
           F T+I+HPNIN +G ICLDIL++QWSPALTISKVLLSICS              +A++YK
Sbjct: 69  FTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128

Query: 351 NDRKVFDRTARQWTEKYA 298
            DR+ ++R AR+WT+KYA
Sbjct: 129 TDREKYNRIAREWTQKYA 146
>sp|P15731|UBC4_YEAST Ubiquitin-conjugating enzyme E2 4 (Ubiquitin-protein ligase 4)
           (Ubiquitin carrier protein 4)
          Length = 148

 Score =  184 bits (467), Expect = 2e-46
 Identities = 85/138 (61%), Positives = 99/138 (71%)
 Frame = -3

Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
           EL  L RDPPT CSAGP  +D++ W ASI GP+DSPY  G+F LSI FP DYPFKPP I 
Sbjct: 10  ELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKIS 69

Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
           F TKI+HPNIN +G ICLDILK QWSPALT+SKVLLSICS              +A +YK
Sbjct: 70  FTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYK 129

Query: 351 NDRKVFDRTARQWTEKYA 298
            DR  ++ TAR+WT+KYA
Sbjct: 130 TDRPKYEATAREWTKKYA 147
>sp|P35132|UBC9_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 9 (Ubiquitin-protein ligase
           9) (Ubiquitin carrier protein 9) (UBCAT4B)
          Length = 148

 Score =  184 bits (467), Expect = 2e-46
 Identities = 84/138 (60%), Positives = 99/138 (71%)
 Frame = -3

Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
           ELK L +DPPT CSAGP   D+F W A+I GPSDSPY  G+FL++I FP DYPFKPP + 
Sbjct: 9   ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVA 68

Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
           F TK+FHPNIN +G ICLDILK QWSPALTISKVLLSICS              +A +YK
Sbjct: 69  FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 128

Query: 351 NDRKVFDRTARQWTEKYA 298
            D+  ++ TAR WT+KYA
Sbjct: 129 TDKNKYESTARTWTQKYA 146
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
           (Ubiquitin carrier protein D1) (Ubiquitin-conjugating
           enzyme E2-17 kDa 1) (E2(17)KB 1)
 sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
           (Ubiquitin carrier protein D1) (UbcH5)
           (Ubiquitin-conjugating enzyme E2-17 kDa 1) (E2(17)KB 1)
          Length = 147

 Score =  183 bits (465), Expect = 4e-46
 Identities = 80/138 (57%), Positives = 102/138 (73%)
 Frame = -3

Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
           EL  L RDPP HCSAGP  +D+F W A+I GP DS Y+ G+F L++ FP DYPFKPP I 
Sbjct: 9   ELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIA 68

Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
           F TKI+HPNIN +G ICLDIL++QWSPALT+SKVLLSICS              +A++YK
Sbjct: 69  FTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYK 128

Query: 351 NDRKVFDRTARQWTEKYA 298
           +D++ ++R AR+WT+KYA
Sbjct: 129 SDKEKYNRHAREWTQKYA 146
>sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 8 (Ubiquitin-protein ligase
           8) (Ubiquitin carrier protein 8) (UBCAT4A)
          Length = 148

 Score =  182 bits (463), Expect = 7e-46
 Identities = 83/138 (60%), Positives = 99/138 (71%)
 Frame = -3

Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
           ELK L +DPPT CSAGP   D+F W A+I GP++SPY  G+FL++I FP DYPFKPP + 
Sbjct: 9   ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVA 68

Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
           F TK+FHPNIN +G ICLDILK QWSPALTISKVLLSICS              +A +YK
Sbjct: 69  FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 128

Query: 351 NDRKVFDRTARQWTEKYA 298
            DR  ++ TAR WT+KYA
Sbjct: 129 TDRAKYEATARNWTQKYA 146
>sp|P35133|UBCA_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 10/12 (Ubiquitin-protein
           ligase 10/12) (Ubiquitin carrier protein 10/12)
          Length = 148

 Score =  182 bits (463), Expect = 7e-46
 Identities = 83/138 (60%), Positives = 99/138 (71%)
 Frame = -3

Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
           ELK L +DPPT CSAGP   D+F W A+I GPS+SPY  G+FL++I FP DYPFKPP + 
Sbjct: 9   ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVA 68

Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
           F TK+FHPNIN +G ICLDILK QWSPALTISKVLLSICS              +A +YK
Sbjct: 69  FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 128

Query: 351 NDRKVFDRTARQWTEKYA 298
            D+  ++ TAR WT+KYA
Sbjct: 129 TDKNKYESTARSWTQKYA 146
>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
           (Ubiquitin carrier protein D3) (Ubiquitin-conjugating
           enzyme E2-17 kDa 3) (E2(17)KB 3) (Phosphoarginine
           phosphatase) (PAPase)
 sp|P61079|UB2D3_MOUSE Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
           (Ubiquitin carrier protein D3) (Ubiquitin-conjugating
           enzyme E2-17 kDa 3) (E2(17)KB 3)
 sp|P61077|UB2D3_HUMAN Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
           (Ubiquitin carrier protein D3) (Ubiquitin-conjugating
           enzyme E2-17 kDa 3) (E2(17)KB 3)
          Length = 147

 Score =  182 bits (462), Expect = 9e-46
 Identities = 80/138 (57%), Positives = 101/138 (73%)
 Frame = -3

Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
           EL  L RDPP  CSAGP  +D+F W A+I GP+DSPY+ G+F L+I FP DYPFKPP + 
Sbjct: 9   ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA 68

Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
           F T+I+HPNIN +G ICLDIL++QWSPALTISKVLLSICS              +A++YK
Sbjct: 69  FTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128

Query: 351 NDRKVFDRTARQWTEKYA 298
            DR  ++R +R+WT+KYA
Sbjct: 129 TDRDKYNRISREWTQKYA 146
>sp|P15732|UBC5_YEAST Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
           (Ubiquitin carrier protein)
          Length = 148

 Score =  181 bits (460), Expect = 1e-45
 Identities = 82/138 (59%), Positives = 98/138 (71%)
 Frame = -3

Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
           EL  L RDPP  CSAGP  +D++ W ASI GPSDSPY  G+F LSI FP DYPFKPP + 
Sbjct: 10  ELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVN 69

Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
           F TKI+HPNIN  G ICLDILK QWSPALT+SKVLLSICS              +A++YK
Sbjct: 70  FTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYK 129

Query: 351 NDRKVFDRTARQWTEKYA 298
            D+  ++ TA++WT+KYA
Sbjct: 130 TDKAKYEATAKEWTKKYA 147
>sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 11 (Ubiquitin-protein ligase
           11) (Ubiquitin carrier protein 11)
          Length = 148

 Score =  181 bits (459), Expect = 2e-45
 Identities = 82/138 (59%), Positives = 99/138 (71%)
 Frame = -3

Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
           ELK L +DPP++CSAGP   D+F W A+I GP +SPY  G+FL+SI FP DYPFKPP + 
Sbjct: 9   ELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVS 68

Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
           F TK++HPNIN +G ICLDILK QWSPALTISKVLLSICS              +A +YK
Sbjct: 69  FKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 128

Query: 351 NDRKVFDRTARQWTEKYA 298
            DR  ++ TAR WT+KYA
Sbjct: 129 TDRSKYESTARSWTQKYA 146
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,120,213
Number of Sequences: 369166
Number of extensions: 1264614
Number of successful extensions: 2706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2665
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)