Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02627
(761 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa... 185 1e-46
sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubi... 184 2e-46
sp|P15731|UBC4_YEAST Ubiquitin-conjugating enzyme E2 4 (Ubi... 184 2e-46
sp|P35132|UBC9_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 184 2e-46
sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (U... 183 4e-46
sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 182 7e-46
sp|P35133|UBCA_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 182 7e-46
sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubi... 182 9e-46
sp|P15732|UBC5_YEAST Ubiquitin-conjugating enzyme E2-16 kDa... 181 1e-45
sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 181 2e-45
>sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 148
Score = 185 bits (469), Expect = 1e-46
Identities = 85/138 (61%), Positives = 99/138 (71%)
Frame = -3
Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
ELK L +DPPT CSAGP D+F W A+I GP+DSPY G+FL+SI FP DYPFKPP +
Sbjct: 9 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVA 68
Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
F TK+FHPNIN +G ICLDILK QWSPALTISKVLLSICS +A +YK
Sbjct: 69 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 128
Query: 351 NDRKVFDRTARQWTEKYA 298
DR ++ TAR WT+KYA
Sbjct: 129 TDRAKYETTARSWTQKYA 146
>sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62838|UB2D2_MOUSE Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62837|UB2D2_HUMAN Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62840|UB5B_XENLA Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Xubc4)
Length = 147
Score = 184 bits (467), Expect = 2e-46
Identities = 81/138 (58%), Positives = 102/138 (73%)
Frame = -3
Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
EL L RDPP CSAGP +D+F W A+I GP+DSPY+ G+F L+I FP DYPFKPP +
Sbjct: 9 ELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA 68
Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
F T+I+HPNIN +G ICLDIL++QWSPALTISKVLLSICS +A++YK
Sbjct: 69 FTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128
Query: 351 NDRKVFDRTARQWTEKYA 298
DR+ ++R AR+WT+KYA
Sbjct: 129 TDREKYNRIAREWTQKYA 146
>sp|P15731|UBC4_YEAST Ubiquitin-conjugating enzyme E2 4 (Ubiquitin-protein ligase 4)
(Ubiquitin carrier protein 4)
Length = 148
Score = 184 bits (467), Expect = 2e-46
Identities = 85/138 (61%), Positives = 99/138 (71%)
Frame = -3
Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
EL L RDPPT CSAGP +D++ W ASI GP+DSPY G+F LSI FP DYPFKPP I
Sbjct: 10 ELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKIS 69
Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
F TKI+HPNIN +G ICLDILK QWSPALT+SKVLLSICS +A +YK
Sbjct: 70 FTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYK 129
Query: 351 NDRKVFDRTARQWTEKYA 298
DR ++ TAR+WT+KYA
Sbjct: 130 TDRPKYEATAREWTKKYA 147
>sp|P35132|UBC9_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 9 (Ubiquitin-protein ligase
9) (Ubiquitin carrier protein 9) (UBCAT4B)
Length = 148
Score = 184 bits (467), Expect = 2e-46
Identities = 84/138 (60%), Positives = 99/138 (71%)
Frame = -3
Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
ELK L +DPPT CSAGP D+F W A+I GPSDSPY G+FL++I FP DYPFKPP +
Sbjct: 9 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVA 68
Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
F TK+FHPNIN +G ICLDILK QWSPALTISKVLLSICS +A +YK
Sbjct: 69 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 128
Query: 351 NDRKVFDRTARQWTEKYA 298
D+ ++ TAR WT+KYA
Sbjct: 129 TDKNKYESTARTWTQKYA 146
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (Ubiquitin-conjugating
enzyme E2-17 kDa 1) (E2(17)KB 1)
sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (UbcH5)
(Ubiquitin-conjugating enzyme E2-17 kDa 1) (E2(17)KB 1)
Length = 147
Score = 183 bits (465), Expect = 4e-46
Identities = 80/138 (57%), Positives = 102/138 (73%)
Frame = -3
Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
EL L RDPP HCSAGP +D+F W A+I GP DS Y+ G+F L++ FP DYPFKPP I
Sbjct: 9 ELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIA 68
Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
F TKI+HPNIN +G ICLDIL++QWSPALT+SKVLLSICS +A++YK
Sbjct: 69 FTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYK 128
Query: 351 NDRKVFDRTARQWTEKYA 298
+D++ ++R AR+WT+KYA
Sbjct: 129 SDKEKYNRHAREWTQKYA 146
>sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 8 (Ubiquitin-protein ligase
8) (Ubiquitin carrier protein 8) (UBCAT4A)
Length = 148
Score = 182 bits (463), Expect = 7e-46
Identities = 83/138 (60%), Positives = 99/138 (71%)
Frame = -3
Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
ELK L +DPPT CSAGP D+F W A+I GP++SPY G+FL++I FP DYPFKPP +
Sbjct: 9 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVA 68
Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
F TK+FHPNIN +G ICLDILK QWSPALTISKVLLSICS +A +YK
Sbjct: 69 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 128
Query: 351 NDRKVFDRTARQWTEKYA 298
DR ++ TAR WT+KYA
Sbjct: 129 TDRAKYEATARNWTQKYA 146
>sp|P35133|UBCA_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 10/12 (Ubiquitin-protein
ligase 10/12) (Ubiquitin carrier protein 10/12)
Length = 148
Score = 182 bits (463), Expect = 7e-46
Identities = 83/138 (60%), Positives = 99/138 (71%)
Frame = -3
Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
ELK L +DPPT CSAGP D+F W A+I GPS+SPY G+FL++I FP DYPFKPP +
Sbjct: 9 ELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVA 68
Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
F TK+FHPNIN +G ICLDILK QWSPALTISKVLLSICS +A +YK
Sbjct: 69 FRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 128
Query: 351 NDRKVFDRTARQWTEKYA 298
D+ ++ TAR WT+KYA
Sbjct: 129 TDKNKYESTARSWTQKYA 146
>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3) (Phosphoarginine
phosphatase) (PAPase)
sp|P61079|UB2D3_MOUSE Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
sp|P61077|UB2D3_HUMAN Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
Length = 147
Score = 182 bits (462), Expect = 9e-46
Identities = 80/138 (57%), Positives = 101/138 (73%)
Frame = -3
Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
EL L RDPP CSAGP +D+F W A+I GP+DSPY+ G+F L+I FP DYPFKPP +
Sbjct: 9 ELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVA 68
Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
F T+I+HPNIN +G ICLDIL++QWSPALTISKVLLSICS +A++YK
Sbjct: 69 FTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYK 128
Query: 351 NDRKVFDRTARQWTEKYA 298
DR ++R +R+WT+KYA
Sbjct: 129 TDRDKYNRISREWTQKYA 146
>sp|P15732|UBC5_YEAST Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 148
Score = 181 bits (460), Expect = 1e-45
Identities = 82/138 (59%), Positives = 98/138 (71%)
Frame = -3
Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
EL L RDPP CSAGP +D++ W ASI GPSDSPY G+F LSI FP DYPFKPP +
Sbjct: 10 ELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVN 69
Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
F TKI+HPNIN G ICLDILK QWSPALT+SKVLLSICS +A++YK
Sbjct: 70 FTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYK 129
Query: 351 NDRKVFDRTARQWTEKYA 298
D+ ++ TA++WT+KYA
Sbjct: 130 TDKAKYEATAKEWTKKYA 147
>sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 11 (Ubiquitin-protein ligase
11) (Ubiquitin carrier protein 11)
Length = 148
Score = 181 bits (459), Expect = 2e-45
Identities = 82/138 (59%), Positives = 99/138 (71%)
Frame = -3
Query: 711 ELKSLMRDPPTHCSAGPTDNDIFEWSASITGPSDSPYENGIFLLSIKFPNDYPFKPPVIR 532
ELK L +DPP++CSAGP D+F W A+I GP +SPY G+FL+SI FP DYPFKPP +
Sbjct: 9 ELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVS 68
Query: 531 FITKIFHPNINKDGFICLDILKTQWSPALTISKVLLSICSXXXXXXXXXXXDVSVAKLYK 352
F TK++HPNIN +G ICLDILK QWSPALTISKVLLSICS +A +YK
Sbjct: 69 FKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 128
Query: 351 NDRKVFDRTARQWTEKYA 298
DR ++ TAR WT+KYA
Sbjct: 129 TDRSKYESTARSWTQKYA 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,120,213
Number of Sequences: 369166
Number of extensions: 1264614
Number of successful extensions: 2706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2665
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)