Planaria EST Database


DrC_02620

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02620
         (267 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P24524|GLRA3_RAT  Glycine receptor alpha-3 chain precursor      29   3.0  
sp|O75311|GLRA3_HUMAN  Glycine receptor alpha-3 chain precursor    29   3.0  
sp|Q91XP5|GLRA3_MOUSE  Glycine receptor alpha-3 chain precursor    29   3.0  
sp|P28473|GBRG3_RAT  Gamma-aminobutyric-acid receptor gamma-...    28   6.7  
sp|P27681|GBRG3_MOUSE  Gamma-aminobutyric-acid receptor gamm...    28   6.7  
sp|Q99928|GBRG3_HUMAN  Gamma-aminobutyric-acid receptor gamm...    28   6.7  
sp|P34904|GBRG4_CHICK  Gamma-aminobutyric-acid receptor gamm...    28   8.7  
>sp|P24524|GLRA3_RAT Glycine receptor alpha-3 chain precursor
          Length = 464

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 159 IFVKICFLNIFGAPVDYRTRNFTF--HRLISNFLRKHNQKNH*FSVSFF 19
           I++ +C L +F A ++Y   NF    H+ +  F RK   K   F++  F
Sbjct: 318 IWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEKF 366
>sp|O75311|GLRA3_HUMAN Glycine receptor alpha-3 chain precursor
          Length = 465

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 159 IFVKICFLNIFGAPVDYRTRNFTF--HRLISNFLRKHNQKNH*FSVSFF 19
           I++ +C L +F A ++Y   NF    H+ +  F RK   K   F++  F
Sbjct: 318 IWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEKF 366
>sp|Q91XP5|GLRA3_MOUSE Glycine receptor alpha-3 chain precursor
          Length = 464

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 159 IFVKICFLNIFGAPVDYRTRNFTF--HRLISNFLRKHNQKNH*FSVSFF 19
           I++ +C L +F A ++Y   NF    H+ +  F RK   K   F++  F
Sbjct: 318 IWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEKF 366
>sp|P28473|GBRG3_RAT Gamma-aminobutyric-acid receptor gamma-3 subunit precursor (GABA(A)
           receptor)
          Length = 467

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 159 IFVKICFLNIFGAPVDYRTRNF 94
           +FV +CFL +F A ++Y T N+
Sbjct: 318 LFVTVCFLFVFAALMEYATLNY 339
>sp|P27681|GBRG3_MOUSE Gamma-aminobutyric-acid receptor gamma-3 subunit precursor (GABA(A)
           receptor)
          Length = 467

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 159 IFVKICFLNIFGAPVDYRTRNF 94
           +FV +CFL +F A ++Y T N+
Sbjct: 318 LFVTVCFLFVFAALMEYATLNY 339
>sp|Q99928|GBRG3_HUMAN Gamma-aminobutyric-acid receptor gamma-3 subunit precursor (GABA(A)
           receptor)
          Length = 467

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 159 IFVKICFLNIFGAPVDYRTRNF 94
           +FV +CFL +F A ++Y T N+
Sbjct: 318 LFVTVCFLFVFAALMEYATLNY 339
>sp|P34904|GBRG4_CHICK Gamma-aminobutyric-acid receptor gamma-4 subunit precursor (GABA(A)
           receptor)
          Length = 457

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 159 IFVKICFLNIFGAPVDYRTRNF 94
           +FV +CF+ +F A ++Y T N+
Sbjct: 320 LFVSVCFIFVFAALMEYATLNY 341
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,656,499
Number of Sequences: 369166
Number of extensions: 467394
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)