Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02620
(267 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24524|GLRA3_RAT Glycine receptor alpha-3 chain precursor 29 3.0
sp|O75311|GLRA3_HUMAN Glycine receptor alpha-3 chain precursor 29 3.0
sp|Q91XP5|GLRA3_MOUSE Glycine receptor alpha-3 chain precursor 29 3.0
sp|P28473|GBRG3_RAT Gamma-aminobutyric-acid receptor gamma-... 28 6.7
sp|P27681|GBRG3_MOUSE Gamma-aminobutyric-acid receptor gamm... 28 6.7
sp|Q99928|GBRG3_HUMAN Gamma-aminobutyric-acid receptor gamm... 28 6.7
sp|P34904|GBRG4_CHICK Gamma-aminobutyric-acid receptor gamm... 28 8.7
>sp|P24524|GLRA3_RAT Glycine receptor alpha-3 chain precursor
Length = 464
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 159 IFVKICFLNIFGAPVDYRTRNFTF--HRLISNFLRKHNQKNH*FSVSFF 19
I++ +C L +F A ++Y NF H+ + F RK K F++ F
Sbjct: 318 IWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEKF 366
>sp|O75311|GLRA3_HUMAN Glycine receptor alpha-3 chain precursor
Length = 465
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 159 IFVKICFLNIFGAPVDYRTRNFTF--HRLISNFLRKHNQKNH*FSVSFF 19
I++ +C L +F A ++Y NF H+ + F RK K F++ F
Sbjct: 318 IWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEKF 366
>sp|Q91XP5|GLRA3_MOUSE Glycine receptor alpha-3 chain precursor
Length = 464
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -1
Query: 159 IFVKICFLNIFGAPVDYRTRNFTF--HRLISNFLRKHNQKNH*FSVSFF 19
I++ +C L +F A ++Y NF H+ + F RK K F++ F
Sbjct: 318 IWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRKNKTEAFALEKF 366
>sp|P28473|GBRG3_RAT Gamma-aminobutyric-acid receptor gamma-3 subunit precursor (GABA(A)
receptor)
Length = 467
Score = 28.1 bits (61), Expect = 6.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 159 IFVKICFLNIFGAPVDYRTRNF 94
+FV +CFL +F A ++Y T N+
Sbjct: 318 LFVTVCFLFVFAALMEYATLNY 339
>sp|P27681|GBRG3_MOUSE Gamma-aminobutyric-acid receptor gamma-3 subunit precursor (GABA(A)
receptor)
Length = 467
Score = 28.1 bits (61), Expect = 6.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 159 IFVKICFLNIFGAPVDYRTRNF 94
+FV +CFL +F A ++Y T N+
Sbjct: 318 LFVTVCFLFVFAALMEYATLNY 339
>sp|Q99928|GBRG3_HUMAN Gamma-aminobutyric-acid receptor gamma-3 subunit precursor (GABA(A)
receptor)
Length = 467
Score = 28.1 bits (61), Expect = 6.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 159 IFVKICFLNIFGAPVDYRTRNF 94
+FV +CFL +F A ++Y T N+
Sbjct: 318 LFVTVCFLFVFAALMEYATLNY 339
>sp|P34904|GBRG4_CHICK Gamma-aminobutyric-acid receptor gamma-4 subunit precursor (GABA(A)
receptor)
Length = 457
Score = 27.7 bits (60), Expect = 8.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 159 IFVKICFLNIFGAPVDYRTRNF 94
+FV +CF+ +F A ++Y T N+
Sbjct: 320 LFVSVCFIFVFAALMEYATLNY 341
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,656,499
Number of Sequences: 369166
Number of extensions: 467394
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)