Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02618
(413 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39683|NPT1_YEAST Nicotinate phosphoribosyltransferase (... 29 4.3
sp|Q9MTQ1|MATK_OENHO Maturase K (Intron maturase) 28 5.6
>sp|P39683|NPT1_YEAST Nicotinate phosphoribosyltransferase (NAPRTase)
Length = 429
Score = 28.9 bits (63), Expect = 4.3
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = -3
Query: 399 KTFPEAPSQHRN*PIMLKLVEVAGNEIISLSDN 301
K+ P+ S+ N I++KL+EV GN I +SDN
Sbjct: 364 KSEPQVKSEPLN--IVIKLLEVNGNHAIKISDN 394
>sp|Q9MTQ1|MATK_OENHO Maturase K (Intron maturase)
Length = 512
Score = 28.5 bits (62), Expect = 5.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 168 GDANINHLKD*NINFKNYSINIQIQSHQQTNNC*ETTYFIN 46
G NIN L +++F Y N+Q++S N E ++ IN
Sbjct: 319 GRININQLGKYSLDFLGYFSNVQLKSSVVRNQTLENSFLIN 359
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,477,783
Number of Sequences: 369166
Number of extensions: 580645
Number of successful extensions: 795
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1902516170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)