Planaria EST Database


DrC_02614

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02614
         (386 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52892|ALAT_YEAST  Putative alanine aminotransferase (Glu...    30   1.3  
sp|P47685|Y447_MYCGE  Hypothetical protein MG447                   29   3.8  
sp|P57189|Y087_BUCAI  Hypothetical protein BU087                   28   4.9  
sp|Q89AR2|PBPB_BUCBP  Penicillin-binding protein 1B (PBP-1b)...    28   6.5  
sp|P26362|CFTR_SQUAC  Cystic fibrosis transmembrane conducta...    28   8.4  
sp|O86241|YE6A_HAEIN  Hypothetical tonB-dependent receptor H...    28   8.4  
sp|Q89AG2|AMPA_BUCBP  Probable cytosol aminopeptidase (Leuci...    28   8.4  
>sp|P52892|ALAT_YEAST Putative alanine aminotransferase (Glutamic--pyruvic transaminase)
           (GPT) (Glutamic--alanine transaminase)
          Length = 507

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = -2

Query: 295 FVIYFSNQKSFSVQVLPFYYNQESSLQSVNLDQYVKVI 182
           + +Y ++   F+ QVLP+Y ++ES+  S N D+  KV+
Sbjct: 199 YPLYTASASLFNAQVLPYYLDEESN-WSTNSDEIEKVV 235
>sp|P47685|Y447_MYCGE Hypothetical protein MG447
          Length = 547

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = -2

Query: 370 FSVYLILKSFI*NIQIFLF-DKNRLDFVIYFSNQKSFSVQVLPFYYNQESSLQS-VNLDQ 197
           F+++     FI  I +  F  ++ L+    F++Q          +Y  +S L S +N+ Q
Sbjct: 37  FALFSAAYVFIDQIMVIKFVPRSELNPDSIFTDQSLIDEFKNSAFYKSDSFLSSGLNIKQ 96

Query: 196 YVKVILHSEYPLLLYYNLI 140
           ++K +L+   PL++  N I
Sbjct: 97  FIKTVLNISQPLIVLLNAI 115
>sp|P57189|Y087_BUCAI Hypothetical protein BU087
          Length = 970

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = +1

Query: 67  KAYKFSALSIYQFLTKDTLNIIKKLSNCNKEVMGIHCARSLLHIDQGLLIEGCSLGYNKM 246
           K Y FS  S  Q      LNI  K   CNK     +  ++LL ++    IE   L  NKM
Sbjct: 207 KIYSFSYFSSNQTKKNFPLNIYLKSLKCNKTQFIDYEYKNLLQVELQANIENNILQINKM 266
>sp|Q89AR2|PBPB_BUCBP Penicillin-binding protein 1B (PBP-1b) (PBP1b) (Murein polymerase)
           [Includes: Penicillin-insensitive transglycosylase
           (Peptidoglycan glycosyltransferase) (Peptidoglycan
           TGase); Penicillin-sensitive transpeptidase
           (DD-transpeptidase)]
          Length = 741

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 319 LFDKNRLDFVIYFSNQKSFSV 257
           LFDKN+L  +++ SN ++FS+
Sbjct: 118 LFDKNKLVRIVHLSNNRNFSI 138
>sp|P26362|CFTR_SQUAC Cystic fibrosis transmembrane conductance regulator (CFTR)
            (cAMP-dependent chloride channel)
          Length = 1492

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +1

Query: 118  TLNIIKK-----LSNCNKEVMGIHCARSLLHIDQGLLIEGCSL 231
            T  II+K      SNC   ++  H   +LL   Q L+IEGCS+
Sbjct: 1390 TFQIIRKTLKHTFSNCTV-ILSEHRVEALLECQQFLVIEGCSV 1431
>sp|O86241|YE6A_HAEIN Hypothetical tonB-dependent receptor HI1466.1
          Length = 345

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 37  SWEFFNRNYGKAYKFSALSIYQ-FLTKDTLNIIKKLS 144
           SW  +N  Y KAYK     +Y  F+  DT    KK+S
Sbjct: 265 SWYAYNNTYTKAYKLPQAIVYDTFIAYDTKISGKKVS 301
>sp|Q89AG2|AMPA_BUCBP Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
           (Leucyl aminopeptidase)
          Length = 501

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +1

Query: 64  GKAYKFSALSIYQFLTKDTLNIIKKLS 144
           GK  +F+ +++YQ L K ++NIIKKLS
Sbjct: 79  GKKERFN-INLYQKLFKTSINIIKKLS 104
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,477,901
Number of Sequences: 369166
Number of extensions: 667970
Number of successful extensions: 1652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)