Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02614
(386 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52892|ALAT_YEAST Putative alanine aminotransferase (Glu... 30 1.3
sp|P47685|Y447_MYCGE Hypothetical protein MG447 29 3.8
sp|P57189|Y087_BUCAI Hypothetical protein BU087 28 4.9
sp|Q89AR2|PBPB_BUCBP Penicillin-binding protein 1B (PBP-1b)... 28 6.5
sp|P26362|CFTR_SQUAC Cystic fibrosis transmembrane conducta... 28 8.4
sp|O86241|YE6A_HAEIN Hypothetical tonB-dependent receptor H... 28 8.4
sp|Q89AG2|AMPA_BUCBP Probable cytosol aminopeptidase (Leuci... 28 8.4
>sp|P52892|ALAT_YEAST Putative alanine aminotransferase (Glutamic--pyruvic transaminase)
(GPT) (Glutamic--alanine transaminase)
Length = 507
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = -2
Query: 295 FVIYFSNQKSFSVQVLPFYYNQESSLQSVNLDQYVKVI 182
+ +Y ++ F+ QVLP+Y ++ES+ S N D+ KV+
Sbjct: 199 YPLYTASASLFNAQVLPYYLDEESN-WSTNSDEIEKVV 235
>sp|P47685|Y447_MYCGE Hypothetical protein MG447
Length = 547
Score = 28.9 bits (63), Expect = 3.8
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -2
Query: 370 FSVYLILKSFI*NIQIFLF-DKNRLDFVIYFSNQKSFSVQVLPFYYNQESSLQS-VNLDQ 197
F+++ FI I + F ++ L+ F++Q +Y +S L S +N+ Q
Sbjct: 37 FALFSAAYVFIDQIMVIKFVPRSELNPDSIFTDQSLIDEFKNSAFYKSDSFLSSGLNIKQ 96
Query: 196 YVKVILHSEYPLLLYYNLI 140
++K +L+ PL++ N I
Sbjct: 97 FIKTVLNISQPLIVLLNAI 115
>sp|P57189|Y087_BUCAI Hypothetical protein BU087
Length = 970
Score = 28.5 bits (62), Expect = 4.9
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = +1
Query: 67 KAYKFSALSIYQFLTKDTLNIIKKLSNCNKEVMGIHCARSLLHIDQGLLIEGCSLGYNKM 246
K Y FS S Q LNI K CNK + ++LL ++ IE L NKM
Sbjct: 207 KIYSFSYFSSNQTKKNFPLNIYLKSLKCNKTQFIDYEYKNLLQVELQANIENNILQINKM 266
>sp|Q89AR2|PBPB_BUCBP Penicillin-binding protein 1B (PBP-1b) (PBP1b) (Murein polymerase)
[Includes: Penicillin-insensitive transglycosylase
(Peptidoglycan glycosyltransferase) (Peptidoglycan
TGase); Penicillin-sensitive transpeptidase
(DD-transpeptidase)]
Length = 741
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -2
Query: 319 LFDKNRLDFVIYFSNQKSFSV 257
LFDKN+L +++ SN ++FS+
Sbjct: 118 LFDKNKLVRIVHLSNNRNFSI 138
>sp|P26362|CFTR_SQUAC Cystic fibrosis transmembrane conductance regulator (CFTR)
(cAMP-dependent chloride channel)
Length = 1492
Score = 27.7 bits (60), Expect = 8.4
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = +1
Query: 118 TLNIIKK-----LSNCNKEVMGIHCARSLLHIDQGLLIEGCSL 231
T II+K SNC ++ H +LL Q L+IEGCS+
Sbjct: 1390 TFQIIRKTLKHTFSNCTV-ILSEHRVEALLECQQFLVIEGCSV 1431
>sp|O86241|YE6A_HAEIN Hypothetical tonB-dependent receptor HI1466.1
Length = 345
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 37 SWEFFNRNYGKAYKFSALSIYQ-FLTKDTLNIIKKLS 144
SW +N Y KAYK +Y F+ DT KK+S
Sbjct: 265 SWYAYNNTYTKAYKLPQAIVYDTFIAYDTKISGKKVS 301
>sp|Q89AG2|AMPA_BUCBP Probable cytosol aminopeptidase (Leucine aminopeptidase) (LAP)
(Leucyl aminopeptidase)
Length = 501
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/27 (51%), Positives = 21/27 (77%)
Frame = +1
Query: 64 GKAYKFSALSIYQFLTKDTLNIIKKLS 144
GK +F+ +++YQ L K ++NIIKKLS
Sbjct: 79 GKKERFN-INLYQKLFKTSINIIKKLS 104
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,477,901
Number of Sequences: 369166
Number of extensions: 667970
Number of successful extensions: 1652
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)