Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02601
(540 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9DC69|NUEM_MOUSE NADH-ubiquinone oxidoreductase 39 kDa ... 124 1e-28
sp|Q16795|NUEM_HUMAN NADH-ubiquinone oxidoreductase 39 kDa ... 121 1e-27
sp|P34943|NUEM_BOVIN NADH-ubiquinone oxidoreductase 39 kDa ... 116 4e-26
sp|P25284|NUEM_NEUCR NADH-ubiquinone oxidoreductase 40 kDa ... 95 9e-20
sp|Q96WY0|RHOC_EMENI Protein rhoC (Rho3 protein homolog) 35 0.15
sp|Q8RC16|ATPG_THETN ATP synthase gamma chain (ATP synthase... 33 0.44
sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrog... 29 6.4
sp|Q00329|RFBJ_SALMU CDP-abequose synthase 29 6.4
sp|O05073|VPI_HAEIN Mu-like prophage FluMu I protein 29 8.3
sp|P0A4I6|CIAH_STRR6 Sensor protein ciaH >gi|61220928|sp|P0... 29 8.3
>sp|Q9DC69|NUEM_MOUSE NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial
precursor (Complex I-39KD) (CI-39KD)
Length = 377
Score = 124 bits (311), Expect = 1e-28
Identities = 60/121 (49%), Positives = 83/121 (68%)
Frame = +2
Query: 119 GKVITVFGHTGFLGEYLIHELVKYDYQLILPYRGDVHDFKHIRMMGGVGQNLFMPFSTEN 298
G V TVFG TGFLG Y+++ L + Q+I+PYR DV+D H+R+MG GQ F+ + +
Sbjct: 53 GVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDVYDIMHLRLMGDPGQLTFLEWDARD 112
Query: 299 EHSIELAVKNSNVVINLIGKSYENSQFSYNDIHTDIPARIARISKRCGVEQFIHISALRA 478
+ SI AV++SNVVINLIG+ +E F + D+ +IP IA+ SK GVE+FIH+S L A
Sbjct: 113 KDSIRKAVQHSNVVINLIGREWETRNFDFEDVFVNIPRAIAQASKEAGVERFIHVSHLNA 172
Query: 479 S 481
S
Sbjct: 173 S 173
>sp|Q16795|NUEM_HUMAN NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial
precursor (Complex I-39KD) (CI-39KD)
Length = 377
Score = 121 bits (303), Expect = 1e-27
Identities = 58/121 (47%), Positives = 82/121 (67%)
Frame = +2
Query: 119 GKVITVFGHTGFLGEYLIHELVKYDYQLILPYRGDVHDFKHIRMMGGVGQNLFMPFSTEN 298
G V TVFG TGFLG Y+++ L + Q+I+PYR D +D H+R MG +GQ LF+ + +
Sbjct: 53 GIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARD 112
Query: 299 EHSIELAVKNSNVVINLIGKSYENSQFSYNDIHTDIPARIARISKRCGVEQFIHISALRA 478
+ SI V++SNVVINLIG+ +E F + D+ IP IA++SK GVE+FIH+S L A
Sbjct: 113 KDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKEAGVEKFIHVSHLNA 172
Query: 479 S 481
+
Sbjct: 173 N 173
>sp|P34943|NUEM_BOVIN NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial
precursor (Complex I-39KD) (CI-39KD)
Length = 380
Score = 116 bits (290), Expect = 4e-26
Identities = 56/120 (46%), Positives = 83/120 (69%)
Frame = +2
Query: 119 GKVITVFGHTGFLGEYLIHELVKYDYQLILPYRGDVHDFKHIRMMGGVGQNLFMPFSTEN 298
G V TVFG TGFLG Y+++ L + Q+I+P+R + +D H+R MG +GQ +FM ++ +
Sbjct: 53 GIVATVFGATGFLGRYVVNHLGRMGSQVIVPHRCEPYDTMHLRPMGDLGQIIFMDWNGRD 112
Query: 299 EHSIELAVKNSNVVINLIGKSYENSQFSYNDIHTDIPARIARISKRCGVEQFIHISALRA 478
+ SI AV++S+VVINL+G+ +E F + D+ IP IA++SK GVE+FIHIS L A
Sbjct: 113 KDSIRRAVEHSSVVINLVGREWETQNFDFEDVFVKIPQAIAQVSKEAGVEKFIHISHLNA 172
>sp|P25284|NUEM_NEUCR NADH-ubiquinone oxidoreductase 40 kDa subunit, mitochondrial
precursor (Complex I-40KD) (CI-40KD)
Length = 375
Score = 95.1 bits (235), Expect = 9e-20
Identities = 45/123 (36%), Positives = 76/123 (61%)
Frame = +2
Query: 119 GKVITVFGHTGFLGEYLIHELVKYDYQLILPYRGDVHDFKHIRMMGGVGQNLFMPFSTEN 298
G TVFG TG LG Y+++ L + +++P+R D ++ +H+++ G +G+ + + F N
Sbjct: 51 GHTATVFGATGQLGRYIVNRLARQGCTVVIPFR-DEYNKRHLKVTGDLGKVVMIEFDLRN 109
Query: 299 EHSIELAVKNSNVVINLIGKSYENSQFSYNDIHTDIPARIARISKRCGVEQFIHISALRA 478
SIE +V++S+VV NLIG+ Y FS+ D+H + RIA + V++FIH+S+ A
Sbjct: 110 TQSIEESVRHSDVVYNLIGRDYPTKNFSFEDVHIEGAERIAEAVAKYDVDRFIHVSSYNA 169
Query: 479 SEN 487
N
Sbjct: 170 DPN 172
>sp|Q96WY0|RHOC_EMENI Protein rhoC (Rho3 protein homolog)
Length = 230
Score = 34.7 bits (78), Expect = 0.15
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Frame = -1
Query: 354 PIRLITTLLFFTANSIECSFSVEKGINK-------FCPTPPIILICLKS 229
P+ T L F +I+C S+E ++K FCPT PIIL+ LKS
Sbjct: 87 PLSYPETDLLFVCFAIDCPASLENVMDKWYPEVLHFCPTTPIILVGLKS 135
>sp|Q8RC16|ATPG_THETN ATP synthase gamma chain (ATP synthase F1 sector gamma subunit)
Length = 295
Score = 33.1 bits (74), Expect = 0.44
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Frame = +2
Query: 50 LHTKELVVGPIIDRYLPTKFDKKGKVITVFGHTGFLGEYLIHELVKYDYQLILPYRGDVH 229
LHT E+ + + +P K DK+ + V G G G Y H ++K +LI +
Sbjct: 57 LHTGEVTSRYLEKKDVPEKQDKRKVFLIVTGDKGLCGAY-NHNVIKASIELI------KN 109
Query: 230 DFKHIRMMGGVGQNLFMPFSTENEHSIELAVKNSNV-----VINLIGKSYEN 370
+ +++++G VG+ F+ + + +N V + ++ K Y N
Sbjct: 110 EKANLKVVGEVGRRYFIKKGYDVDRDFLYTAQNPTVDLAAEIAEILLKEYNN 161
>sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
Length = 362
Score = 29.3 bits (64), Expect = 6.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 116 KGKVITVFGHTGFLGEYLIHELVKYDY 196
K K TV G +GFLG++++ +L++ Y
Sbjct: 25 KAKKCTVIGGSGFLGQHMVEQLLERGY 51
>sp|Q00329|RFBJ_SALMU CDP-abequose synthase
Length = 293
Score = 29.3 bits (64), Expect = 6.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 122 KVITVFGHTGFLGEYLIHELVKYDYQLI 205
K I + G T F+G +L+H L+K Y +I
Sbjct: 6 KKILMTGATSFVGTHLLHSLIKEGYSII 33
>sp|O05073|VPI_HAEIN Mu-like prophage FluMu I protein
Length = 355
Score = 28.9 bits (63), Expect = 8.3
Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Frame = +2
Query: 149 GFLGEYLIHE--------LVKYDYQLILPYRGDVHDFKHIRMMGGVGQNLFMPFSTENEH 304
G + + LIH+ LV YD++ IL + + D ++ G + F E
Sbjct: 47 GTIAQNLIHKARQLNQDLLVDYDHETILKAKKGI-DAGNVVAAGWFNADEIQWFDDETRQ 105
Query: 305 SIELAVKNSNVVINLIGK---SYENSQFSYNDIHTDIPARIARISKRCGVEQFIHISALR 475
+ + + + I ++ ++ F Y++ T + R+A ++ G+ ++ L
Sbjct: 106 GLYIKPRWTPKAYQQIKDGEFAFLSAVFPYDENGTPLELRMAALTNDPGITGMQRLAVLS 165
Query: 476 ASENPKEHI 502
A+ NP+E++
Sbjct: 166 ATLNPQENV 174
>sp|P0A4I6|CIAH_STRR6 Sensor protein ciaH
sp|P0A4I5|CIAH_STRPN Sensor protein ciaH
Length = 444
Score = 28.9 bits (63), Expect = 8.3
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = -2
Query: 218 LDKVKLIDSRTSLTHVSDIHLRNQYGQKQL*LFPFYQILLVNSDL 84
LDK+KL + L H+ I + N YGQ+++ Y+++L+ +++
Sbjct: 117 LDKIKL--EKKELGHIYQIQVFNSYGQEEI-----YRVILMETNI 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,887,676
Number of Sequences: 369166
Number of extensions: 1185738
Number of successful extensions: 2968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2966
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)