Planaria EST Database


DrC_02601

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02601
         (540 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9DC69|NUEM_MOUSE  NADH-ubiquinone oxidoreductase 39 kDa ...   124   1e-28
sp|Q16795|NUEM_HUMAN  NADH-ubiquinone oxidoreductase 39 kDa ...   121   1e-27
sp|P34943|NUEM_BOVIN  NADH-ubiquinone oxidoreductase 39 kDa ...   116   4e-26
sp|P25284|NUEM_NEUCR  NADH-ubiquinone oxidoreductase 40 kDa ...    95   9e-20
sp|Q96WY0|RHOC_EMENI  Protein rhoC (Rho3 protein homolog)          35   0.15 
sp|Q8RC16|ATPG_THETN  ATP synthase gamma chain (ATP synthase...    33   0.44 
sp|Q9R1J0|NSDHL_MOUSE  Sterol-4-alpha-carboxylate 3-dehydrog...    29   6.4  
sp|Q00329|RFBJ_SALMU  CDP-abequose synthase                        29   6.4  
sp|O05073|VPI_HAEIN  Mu-like prophage FluMu I protein              29   8.3  
sp|P0A4I6|CIAH_STRR6  Sensor protein ciaH >gi|61220928|sp|P0...    29   8.3  
>sp|Q9DC69|NUEM_MOUSE NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial
           precursor (Complex I-39KD) (CI-39KD)
          Length = 377

 Score =  124 bits (311), Expect = 1e-28
 Identities = 60/121 (49%), Positives = 83/121 (68%)
 Frame = +2

Query: 119 GKVITVFGHTGFLGEYLIHELVKYDYQLILPYRGDVHDFKHIRMMGGVGQNLFMPFSTEN 298
           G V TVFG TGFLG Y+++ L +   Q+I+PYR DV+D  H+R+MG  GQ  F+ +   +
Sbjct: 53  GVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDVYDIMHLRLMGDPGQLTFLEWDARD 112

Query: 299 EHSIELAVKNSNVVINLIGKSYENSQFSYNDIHTDIPARIARISKRCGVEQFIHISALRA 478
           + SI  AV++SNVVINLIG+ +E   F + D+  +IP  IA+ SK  GVE+FIH+S L A
Sbjct: 113 KDSIRKAVQHSNVVINLIGREWETRNFDFEDVFVNIPRAIAQASKEAGVERFIHVSHLNA 172

Query: 479 S 481
           S
Sbjct: 173 S 173
>sp|Q16795|NUEM_HUMAN NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial
           precursor (Complex I-39KD) (CI-39KD)
          Length = 377

 Score =  121 bits (303), Expect = 1e-27
 Identities = 58/121 (47%), Positives = 82/121 (67%)
 Frame = +2

Query: 119 GKVITVFGHTGFLGEYLIHELVKYDYQLILPYRGDVHDFKHIRMMGGVGQNLFMPFSTEN 298
           G V TVFG TGFLG Y+++ L +   Q+I+PYR D +D  H+R MG +GQ LF+ +   +
Sbjct: 53  GIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARD 112

Query: 299 EHSIELAVKNSNVVINLIGKSYENSQFSYNDIHTDIPARIARISKRCGVEQFIHISALRA 478
           + SI   V++SNVVINLIG+ +E   F + D+   IP  IA++SK  GVE+FIH+S L A
Sbjct: 113 KDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKEAGVEKFIHVSHLNA 172

Query: 479 S 481
           +
Sbjct: 173 N 173
>sp|P34943|NUEM_BOVIN NADH-ubiquinone oxidoreductase 39 kDa subunit, mitochondrial
           precursor (Complex I-39KD) (CI-39KD)
          Length = 380

 Score =  116 bits (290), Expect = 4e-26
 Identities = 56/120 (46%), Positives = 83/120 (69%)
 Frame = +2

Query: 119 GKVITVFGHTGFLGEYLIHELVKYDYQLILPYRGDVHDFKHIRMMGGVGQNLFMPFSTEN 298
           G V TVFG TGFLG Y+++ L +   Q+I+P+R + +D  H+R MG +GQ +FM ++  +
Sbjct: 53  GIVATVFGATGFLGRYVVNHLGRMGSQVIVPHRCEPYDTMHLRPMGDLGQIIFMDWNGRD 112

Query: 299 EHSIELAVKNSNVVINLIGKSYENSQFSYNDIHTDIPARIARISKRCGVEQFIHISALRA 478
           + SI  AV++S+VVINL+G+ +E   F + D+   IP  IA++SK  GVE+FIHIS L A
Sbjct: 113 KDSIRRAVEHSSVVINLVGREWETQNFDFEDVFVKIPQAIAQVSKEAGVEKFIHISHLNA 172
>sp|P25284|NUEM_NEUCR NADH-ubiquinone oxidoreductase 40 kDa subunit, mitochondrial
           precursor (Complex I-40KD) (CI-40KD)
          Length = 375

 Score = 95.1 bits (235), Expect = 9e-20
 Identities = 45/123 (36%), Positives = 76/123 (61%)
 Frame = +2

Query: 119 GKVITVFGHTGFLGEYLIHELVKYDYQLILPYRGDVHDFKHIRMMGGVGQNLFMPFSTEN 298
           G   TVFG TG LG Y+++ L +    +++P+R D ++ +H+++ G +G+ + + F   N
Sbjct: 51  GHTATVFGATGQLGRYIVNRLARQGCTVVIPFR-DEYNKRHLKVTGDLGKVVMIEFDLRN 109

Query: 299 EHSIELAVKNSNVVINLIGKSYENSQFSYNDIHTDIPARIARISKRCGVEQFIHISALRA 478
             SIE +V++S+VV NLIG+ Y    FS+ D+H +   RIA    +  V++FIH+S+  A
Sbjct: 110 TQSIEESVRHSDVVYNLIGRDYPTKNFSFEDVHIEGAERIAEAVAKYDVDRFIHVSSYNA 169

Query: 479 SEN 487
             N
Sbjct: 170 DPN 172
>sp|Q96WY0|RHOC_EMENI Protein rhoC (Rho3 protein homolog)
          Length = 230

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
 Frame = -1

Query: 354 PIRLITTLLFFTANSIECSFSVEKGINK-------FCPTPPIILICLKS 229
           P+    T L F   +I+C  S+E  ++K       FCPT PIIL+ LKS
Sbjct: 87  PLSYPETDLLFVCFAIDCPASLENVMDKWYPEVLHFCPTTPIILVGLKS 135
>sp|Q8RC16|ATPG_THETN ATP synthase gamma chain (ATP synthase F1 sector gamma subunit)
          Length = 295

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
 Frame = +2

Query: 50  LHTKELVVGPIIDRYLPTKFDKKGKVITVFGHTGFLGEYLIHELVKYDYQLILPYRGDVH 229
           LHT E+    +  + +P K DK+   + V G  G  G Y  H ++K   +LI       +
Sbjct: 57  LHTGEVTSRYLEKKDVPEKQDKRKVFLIVTGDKGLCGAY-NHNVIKASIELI------KN 109

Query: 230 DFKHIRMMGGVGQNLFMPFSTENEHSIELAVKNSNV-----VINLIGKSYEN 370
           +  +++++G VG+  F+    + +       +N  V     +  ++ K Y N
Sbjct: 110 EKANLKVVGEVGRRYFIKKGYDVDRDFLYTAQNPTVDLAAEIAEILLKEYNN 161
>sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
          Length = 362

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 116 KGKVITVFGHTGFLGEYLIHELVKYDY 196
           K K  TV G +GFLG++++ +L++  Y
Sbjct: 25  KAKKCTVIGGSGFLGQHMVEQLLERGY 51
>sp|Q00329|RFBJ_SALMU CDP-abequose synthase
          Length = 293

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 122 KVITVFGHTGFLGEYLIHELVKYDYQLI 205
           K I + G T F+G +L+H L+K  Y +I
Sbjct: 6   KKILMTGATSFVGTHLLHSLIKEGYSII 33
>sp|O05073|VPI_HAEIN Mu-like prophage FluMu I protein
          Length = 355

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 26/129 (20%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
 Frame = +2

Query: 149 GFLGEYLIHE--------LVKYDYQLILPYRGDVHDFKHIRMMGGVGQNLFMPFSTENEH 304
           G + + LIH+        LV YD++ IL  +  + D  ++   G    +    F  E   
Sbjct: 47  GTIAQNLIHKARQLNQDLLVDYDHETILKAKKGI-DAGNVVAAGWFNADEIQWFDDETRQ 105

Query: 305 SIELAVKNSNVVINLIGK---SYENSQFSYNDIHTDIPARIARISKRCGVEQFIHISALR 475
            + +  + +      I     ++ ++ F Y++  T +  R+A ++   G+     ++ L 
Sbjct: 106 GLYIKPRWTPKAYQQIKDGEFAFLSAVFPYDENGTPLELRMAALTNDPGITGMQRLAVLS 165

Query: 476 ASENPKEHI 502
           A+ NP+E++
Sbjct: 166 ATLNPQENV 174
>sp|P0A4I6|CIAH_STRR6 Sensor protein ciaH
 sp|P0A4I5|CIAH_STRPN Sensor protein ciaH
          Length = 444

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = -2

Query: 218 LDKVKLIDSRTSLTHVSDIHLRNQYGQKQL*LFPFYQILLVNSDL 84
           LDK+KL   +  L H+  I + N YGQ+++     Y+++L+ +++
Sbjct: 117 LDKIKL--EKKELGHIYQIQVFNSYGQEEI-----YRVILMETNI 154
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,887,676
Number of Sequences: 369166
Number of extensions: 1185738
Number of successful extensions: 2968
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2966
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)