Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02600
(268 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprote... 103 1e-22
sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprote... 103 2e-22
sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G (snR... 101 5e-22
sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprote... 87 1e-17
sp|O74966|RUXG_SCHPO Probable small nuclear ribonucleoprote... 82 5e-16
sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprote... 79 3e-15
sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G (snR... 79 4e-15
sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 54 1e-07
sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 53 3e-07
sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm3 49 4e-06
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 77
Score = 103 bits (258), Expect = 1e-22
Identities = 47/71 (66%), Positives = 58/71 (81%)
Frame = +2
Query: 2 PPELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGN 181
PPELKKYMDK+M LKLNGNRRV GI+RGFDPFMN+V++ AVE KD +N+G VIRGN
Sbjct: 6 PPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGN 65
Query: 182 SINILEAVDRV 214
S+ I+E +R+
Sbjct: 66 SVVIMEPKERI 76
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 76
Score = 103 bits (256), Expect = 2e-22
Identities = 49/71 (69%), Positives = 60/71 (84%)
Frame = +2
Query: 2 PPELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGN 181
PPE+KKYMDK+M LKLNG R V GI+RGFDPFMN+VL++ VE KDN + NIG +VIRGN
Sbjct: 6 PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGN 65
Query: 182 SINILEAVDRV 214
SI ++EA+DRV
Sbjct: 66 SIVMVEALDRV 76
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG)
sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG)
Length = 76
Score = 101 bits (252), Expect = 5e-22
Identities = 47/71 (66%), Positives = 60/71 (84%)
Frame = +2
Query: 2 PPELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGN 181
PPELKK+MDKK+SLKLNG R V+GI+RGFDPFMN+V++ VE+ Q+ NIG +VIRGN
Sbjct: 6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65
Query: 182 SINILEAVDRV 214
SI +LEA++RV
Sbjct: 66 SIIMLEALERV 76
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 80
Score = 87.0 bits (214), Expect = 1e-17
Identities = 41/71 (57%), Positives = 56/71 (78%)
Frame = +2
Query: 2 PPELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGN 181
PP+LKKYMDKK+ +KLN NR V G +RGFD FMN+V++N VE++ N + +IG +VIRGN
Sbjct: 7 PPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVN-GNDKTDIGMVVIRGN 65
Query: 182 SINILEAVDRV 214
SI +EA++ V
Sbjct: 66 SIVTVEALEPV 76
>sp|O74966|RUXG_SCHPO Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 77
Score = 81.6 bits (200), Expect = 5e-16
Identities = 32/70 (45%), Positives = 59/70 (84%)
Frame = +2
Query: 5 PELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGNS 184
P+LKKY+D+++ ++LNG+R+V G++RG+D F+NIVLE+++E D +++ IG++ IRGNS
Sbjct: 7 PDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGNS 66
Query: 185 INILEAVDRV 214
+ ++E +D++
Sbjct: 67 VIMIETLDKM 76
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
(Sm-G) (SmG)
Length = 81
Score = 79.0 bits (193), Expect = 3e-15
Identities = 36/71 (50%), Positives = 54/71 (76%)
Frame = +2
Query: 2 PPELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGN 181
PP LKKYMDK++ + L NR + G +RGFD FMN+V++N VE++ N++ +IG +VIRGN
Sbjct: 7 PPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVN-GNEKNDIGMVVIRGN 65
Query: 182 SINILEAVDRV 214
S+ +EA++ V
Sbjct: 66 SVVTVEALEPV 76
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
(SmG)
Length = 77
Score = 78.6 bits (192), Expect = 4e-15
Identities = 40/74 (54%), Positives = 58/74 (78%), Gaps = 4/74 (5%)
Frame = +2
Query: 5 PELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEID----KDNQEINIGTIVI 172
PELKKYMDKK+ L +NG+R+V GI+RG+D F+N+VL++A+EI+ +N ++ + T VI
Sbjct: 5 PELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQT-VI 63
Query: 173 RGNSINILEAVDRV 214
RGNSI LEA+D +
Sbjct: 64 RGNSIISLEALDAI 77
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7
Length = 103
Score = 53.5 bits (127), Expect = 1e-07
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Frame = +2
Query: 8 ELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EINIGT 163
+L KY+DK + +K G R GI++GFDP +N+VL+ +E D D+Q +G
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73
Query: 164 IVIRGNSINIL 196
+V RG S+ ++
Sbjct: 74 VVCRGTSVVLI 84
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7
Length = 103
Score = 52.8 bits (125), Expect = 3e-07
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Frame = +2
Query: 8 ELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EINIGT 163
+L KY+DK + +K G R GI++GFDP +N+VL+ +E D D+Q +G
Sbjct: 14 DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGL 73
Query: 164 IVIRGNSINIL 196
+V RG S+ ++
Sbjct: 74 VVCRGTSVVLI 84
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm3
Length = 107
Score = 48.9 bits (115), Expect = 4e-06
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Frame = +2
Query: 8 ELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEI-----DKDNQEI------N 154
+L KY D K+ +KL G + V G+++G+D MN+VL++ VE D++N E+
Sbjct: 21 DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARK 80
Query: 155 IGTIVIRGNSINILEAVD 208
+G VIRG + L + +
Sbjct: 81 LGLTVIRGTILVSLSSAE 98
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,107,420
Number of Sequences: 369166
Number of extensions: 333270
Number of successful extensions: 980
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)