Planaria EST Database


DrC_02600

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02600
         (268 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9N4G9|RUXG_CAEEL  Probable small nuclear ribonucleoprote...   103   1e-22
sp|Q9VXE0|RUXG_DROME  Probable small nuclear ribonucleoprote...   103   2e-22
sp|P62308|RUXG_HUMAN  Small nuclear ribonucleoprotein G (snR...   101   5e-22
sp|O82221|RUXG_ARATH  Probable small nuclear ribonucleoprote...    87   1e-17
sp|O74966|RUXG_SCHPO  Probable small nuclear ribonucleoprote...    82   5e-16
sp|P24715|RUXG_MEDSA  Probable small nuclear ribonucleoprote...    79   3e-15
sp|P40204|RUXG_YEAST  Small nuclear ribonucleoprotein G (snR...    79   4e-15
sp|Q9UK45|LSM7_HUMAN  U6 snRNA-associated Sm-like protein LSm7     54   1e-07
sp|Q9CQQ8|LSM7_MOUSE  U6 snRNA-associated Sm-like protein LSm7     53   3e-07
sp|P53905|LSM7_YEAST  U6 snRNA-associated Sm-like protein LSm3     49   4e-06
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 77

 Score =  103 bits (258), Expect = 1e-22
 Identities = 47/71 (66%), Positives = 58/71 (81%)
 Frame = +2

Query: 2   PPELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGN 181
           PPELKKYMDK+M LKLNGNRRV GI+RGFDPFMN+V++ AVE  KD   +N+G  VIRGN
Sbjct: 6   PPELKKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDGGSVNLGMTVIRGN 65

Query: 182 SINILEAVDRV 214
           S+ I+E  +R+
Sbjct: 66  SVVIMEPKERI 76
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 76

 Score =  103 bits (256), Expect = 2e-22
 Identities = 49/71 (69%), Positives = 60/71 (84%)
 Frame = +2

Query: 2   PPELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGN 181
           PPE+KKYMDK+M LKLNG R V GI+RGFDPFMN+VL++ VE  KDN + NIG +VIRGN
Sbjct: 6   PPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGN 65

Query: 182 SINILEAVDRV 214
           SI ++EA+DRV
Sbjct: 66  SIVMVEALDRV 76
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
           (SmG)
 sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
           (SmG)
          Length = 76

 Score =  101 bits (252), Expect = 5e-22
 Identities = 47/71 (66%), Positives = 60/71 (84%)
 Frame = +2

Query: 2   PPELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGN 181
           PPELKK+MDKK+SLKLNG R V+GI+RGFDPFMN+V++  VE+    Q+ NIG +VIRGN
Sbjct: 6   PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGN 65

Query: 182 SINILEAVDRV 214
           SI +LEA++RV
Sbjct: 66  SIIMLEALERV 76
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 80

 Score = 87.0 bits (214), Expect = 1e-17
 Identities = 41/71 (57%), Positives = 56/71 (78%)
 Frame = +2

Query: 2   PPELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGN 181
           PP+LKKYMDKK+ +KLN NR V G +RGFD FMN+V++N VE++  N + +IG +VIRGN
Sbjct: 7   PPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEVN-GNDKTDIGMVVIRGN 65

Query: 182 SINILEAVDRV 214
           SI  +EA++ V
Sbjct: 66  SIVTVEALEPV 76
>sp|O74966|RUXG_SCHPO Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 77

 Score = 81.6 bits (200), Expect = 5e-16
 Identities = 32/70 (45%), Positives = 59/70 (84%)
 Frame = +2

Query: 5   PELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGNS 184
           P+LKKY+D+++ ++LNG+R+V G++RG+D F+NIVLE+++E   D +++ IG++ IRGNS
Sbjct: 7   PDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGNS 66

Query: 185 INILEAVDRV 214
           + ++E +D++
Sbjct: 67  VIMIETLDKM 76
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)
           (Sm-G) (SmG)
          Length = 81

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 36/71 (50%), Positives = 54/71 (76%)
 Frame = +2

Query: 2   PPELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEIDKDNQEINIGTIVIRGN 181
           PP LKKYMDK++ + L  NR + G +RGFD FMN+V++N VE++  N++ +IG +VIRGN
Sbjct: 7   PPALKKYMDKQLQINLKANRMIVGTLRGFDQFMNLVVDNTVEVN-GNEKNDIGMVVIRGN 65

Query: 182 SINILEAVDRV 214
           S+  +EA++ V
Sbjct: 66  SVVTVEALEPV 76
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
           (SmG)
          Length = 77

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 40/74 (54%), Positives = 58/74 (78%), Gaps = 4/74 (5%)
 Frame = +2

Query: 5   PELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEID----KDNQEINIGTIVI 172
           PELKKYMDKK+ L +NG+R+V GI+RG+D F+N+VL++A+EI+     +N ++ + T VI
Sbjct: 5   PELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQT-VI 63

Query: 173 RGNSINILEAVDRV 214
           RGNSI  LEA+D +
Sbjct: 64  RGNSIISLEALDAI 77
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7
          Length = 103

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
 Frame = +2

Query: 8   ELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EINIGT 163
           +L KY+DK + +K  G R   GI++GFDP +N+VL+  +E   D D+Q         +G 
Sbjct: 14  DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGL 73

Query: 164 IVIRGNSINIL 196
           +V RG S+ ++
Sbjct: 74  VVCRGTSVVLI 84
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7
          Length = 103

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
 Frame = +2

Query: 8   ELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEI--DKDNQ------EINIGT 163
           +L KY+DK + +K  G R   GI++GFDP +N+VL+  +E   D D+Q         +G 
Sbjct: 14  DLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGL 73

Query: 164 IVIRGNSINIL 196
           +V RG S+ ++
Sbjct: 74  VVCRGTSVVLI 84
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm3
          Length = 107

 Score = 48.9 bits (115), Expect = 4e-06
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
 Frame = +2

Query: 8   ELKKYMDKKMSLKLNGNRRVKGIMRGFDPFMNIVLENAVEI-----DKDNQEI------N 154
           +L KY D K+ +KL G + V G+++G+D  MN+VL++ VE      D++N E+       
Sbjct: 21  DLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARK 80

Query: 155 IGTIVIRGNSINILEAVD 208
           +G  VIRG  +  L + +
Sbjct: 81  LGLTVIRGTILVSLSSAE 98
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,107,420
Number of Sequences: 369166
Number of extensions: 333270
Number of successful extensions: 980
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1729210500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)