Planaria EST Database


DrC_02578

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02578
         (739 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q12460|SIK1_YEAST  SIK1 protein (Nucleolar protein NOP56)       54   4e-07
sp|Q9D6Z1|NOP56_MOUSE  Nucleolar protein Nop56 (Nucleolar pr...    45   3e-04
sp|Q5RA29|NOP56_PONPY  Nucleolar protein Nop56 (Nucleolar pr...    45   3e-04
sp|Q95K50|NOP56_MACFA  Nucleolar protein Nop56 (Nucleolar pr...    45   3e-04
sp|O00567|NOP56_HUMAN  Nucleolar protein Nop56 (Nucleolar pr...    45   3e-04
sp|O04656|Y5714_ARATH  Hypothetical protein At5g27140              42   0.002
sp|Q21276|YZVL_CAEEL  Hypothetical protein K07C5.4 in chromo...    39   0.019
sp|Q12499|NOP58_YEAST  Nucleolar protein NOP58 (Nucleolar pr...    35   0.27 
sp|O04658|Y5712_ARATH  Hypothetical protein At5g27120              33   0.61 
sp|Q56310|CHEA_THEMA  Chemotaxis protein cheA                      32   1.4  
>sp|Q12460|SIK1_YEAST SIK1 protein (Nucleolar protein NOP56)
          Length = 504

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
 Frame = +2

Query: 152 CDITKNVAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDS 331
           C+    VAPNL+ L+GE           +  ++LIS AGSL  LS+  ++T+  L    +
Sbjct: 293 CEKMHTVAPNLSELIGE-----------VIGARLISHAGSLTNLSKQAASTVQILGAEKA 341

Query: 332 LLR----KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFG 475
           L R    KGN  K         +SK         S+ L++K ++ASR+D +S + S+ FG
Sbjct: 342 LFRALKTKGNTPKYGLIYHSGFISKASAKNKGRISRYLANKCSMASRIDNYSEEPSNVFG 401

Query: 476 RKLSYHSQCELKSWAKKKGFKLEKNETAVQ 565
             L    Q E +      G    KNE A+Q
Sbjct: 402 SVLK--KQVEQRLEFYNTGKPTLKNELAIQ 429
>sp|Q9D6Z1|NOP56_MOUSE Nucleolar protein Nop56 (Nucleolar protein 5A)
          Length = 580

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
 Frame = +2

Query: 170 VAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSLLR--- 340
           VAP+L+ L+GE+             ++LI+ AGSL  L++ P++T+  L    +L R   
Sbjct: 292 VAPSLSALIGEAV-----------GARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340

Query: 341 -KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFGRKL 484
            +GN  K         + +         S+ L++K ++ASR+D FS   +  FG KL
Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKL 397
>sp|Q5RA29|NOP56_PONPY Nucleolar protein Nop56 (Nucleolar protein 5A)
          Length = 594

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
 Frame = +2

Query: 170 VAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSLLR--- 340
           VAP+L+ L+GE+             ++LI+ AGSL  L++ P++T+  L    +L R   
Sbjct: 292 VAPSLSALIGEAV-----------GARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340

Query: 341 -KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFGRKL 484
            +GN  K         + +         S+ L++K ++ASR+D FS   +  FG KL
Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKL 397
>sp|Q95K50|NOP56_MACFA Nucleolar protein Nop56 (Nucleolar protein 5A)
          Length = 594

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
 Frame = +2

Query: 170 VAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSLLR--- 340
           VAP+L+ L+GE+             ++LI+ AGSL  L++ P++T+  L    +L R   
Sbjct: 292 VAPSLSALIGEAV-----------GARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340

Query: 341 -KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFGRKL 484
            +GN  K         + +         S+ L++K ++ASR+D FS   +  FG KL
Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKL 397
>sp|O00567|NOP56_HUMAN Nucleolar protein Nop56 (Nucleolar protein 5A)
          Length = 594

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
 Frame = +2

Query: 170 VAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSLLR--- 340
           VAP+L+ L+GE+             ++LI+ AGSL  L++ P++T+  L    +L R   
Sbjct: 292 VAPSLSALIGEAV-----------GARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340

Query: 341 -KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFGRKL 484
            +GN  K         + +         S+ L++K ++ASR+D FS   +  FG KL
Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKL 397
>sp|O04656|Y5714_ARATH Hypothetical protein At5g27140
          Length = 435

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
 Frame = +2

Query: 101 DDLLKFSSDIEKCEILTCDITKN----VAPNLNFLLGESEHNPSSKDDFLRASKLISTAG 268
           D +L  + D    + L CD  KN    +APNL  L+GE           L  ++LIS  G
Sbjct: 214 DQVLSIAED----KTLLCDDLKNKMNKIAPNLTALVGE-----------LVGARLISHCG 258

Query: 269 SLKKLSELPSTTIHTLTFTDSLLRKGNFKK------------VPRNEKDKLLSKESKILS 412
           SL  LS+LP +TI  L    +L +    K+            + R    +   K ++ L+
Sbjct: 259 SLWNLSKLPWSTIQILGAEKTLYKALKTKQATPKYGLIYHAPLVRQAAPENKGKIARSLA 318

Query: 413 DKAALASRVDYFSGQSSDDFG 475
            K+ALA R D F     +  G
Sbjct: 319 AKSALAIRCDAFGNGQDNTMG 339
>sp|Q21276|YZVL_CAEEL Hypothetical protein K07C5.4 in chromosome V
          Length = 486

 Score = 38.5 bits (88), Expect = 0.019
 Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
 Frame = +2

Query: 155 DITKNVAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSL 334
           D   + AP+L+ L+GE              ++LIS AGSL  L++ P++T+  L    +L
Sbjct: 293 DRMDHCAPSLSALIGEQV-----------GARLISHAGSLTNLAKYPASTVQILGAEKAL 341

Query: 335 LR----KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFGR 478
            R    + N  K         + K         S+ L++K ++A+RVD FS      +G 
Sbjct: 342 FRALKTRSNTPKYGLLFHSSFIGKAGTKNKGRVSRYLANKCSIAARVDCFSETPVSTYGE 401

Query: 479 KL 484
            L
Sbjct: 402 FL 403
>sp|Q12499|NOP58_YEAST Nucleolar protein NOP58 (Nucleolar protein NOP5)
          Length = 511

 Score = 34.7 bits (78), Expect = 0.27
 Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
 Frame = +2

Query: 101 DDLLKFSSDIEKCEILTCDITKNVAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKK 280
           + +++F++  E+         K +APNL  L+GE           L  ++LI+ +GSL  
Sbjct: 260 EQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGE-----------LVGARLIAHSGSLIS 308

Query: 281 LSELPSTTIHTLTFTDSLLRKGNFK------------KVPRNEKDKLLSKESKILSDKAA 424
           L++ P++TI  L    +L R    K             +      K   K +++L+ KAA
Sbjct: 309 LAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAA 368

Query: 425 LASRVDYFSGQSSDDFG 475
           ++ R D  + +  DD G
Sbjct: 369 VSLRYDALA-EDRDDSG 384
>sp|O04658|Y5712_ARATH Hypothetical protein At5g27120
          Length = 439

 Score = 33.5 bits (75), Expect = 0.61
 Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
 Frame = +2

Query: 170 VAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSLLRKGN 349
           +APNL  L+GE           L  ++LIS  GSL  L++ P +T+  L    +L R   
Sbjct: 280 IAPNLTALVGE-----------LVGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALK 328

Query: 350 FK------------KVPRNEKDKLLSKESKILSDKAALASRVDYFSGQSSDD 469
            K             V      K   K S+ L+ K+ LA R D   G S D+
Sbjct: 329 TKHATPKYGLIFHASVVGQAAPKNKGKISRSLAAKSVLAIRCDAL-GDSQDN 379
>sp|Q56310|CHEA_THEMA Chemotaxis protein cheA
          Length = 671

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 6/140 (4%)
 Frame = +2

Query: 155 DITKNVAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTT--IHTLTFTD 328
           D TK    NLN  L E E NP   +    A + + T   +       S     HTL   +
Sbjct: 11  DETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTL---E 67

Query: 329 SLLRKGNFKKVPRNEKDKLLSK-ESKILSDKAALASRVDYFSGQSSDDFGRKLSYHSQCE 505
           ++L K       RN + K+ S    KI +    +   VD    + SDD G  +   S   
Sbjct: 68  NILDKA------RNSEIKITSDLLDKIFAGVDMITRMVDKIVSEGSDDIGENIDVFSD-T 120

Query: 506 LKSWA---KKKGFKLEKNET 556
           +KS+A   K+K  ++ KNET
Sbjct: 121 IKSFASSGKEKPSEI-KNET 139
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,173,362
Number of Sequences: 369166
Number of extensions: 1144997
Number of successful extensions: 3524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3523
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)