Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02578
(739 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q12460|SIK1_YEAST SIK1 protein (Nucleolar protein NOP56) 54 4e-07
sp|Q9D6Z1|NOP56_MOUSE Nucleolar protein Nop56 (Nucleolar pr... 45 3e-04
sp|Q5RA29|NOP56_PONPY Nucleolar protein Nop56 (Nucleolar pr... 45 3e-04
sp|Q95K50|NOP56_MACFA Nucleolar protein Nop56 (Nucleolar pr... 45 3e-04
sp|O00567|NOP56_HUMAN Nucleolar protein Nop56 (Nucleolar pr... 45 3e-04
sp|O04656|Y5714_ARATH Hypothetical protein At5g27140 42 0.002
sp|Q21276|YZVL_CAEEL Hypothetical protein K07C5.4 in chromo... 39 0.019
sp|Q12499|NOP58_YEAST Nucleolar protein NOP58 (Nucleolar pr... 35 0.27
sp|O04658|Y5712_ARATH Hypothetical protein At5g27120 33 0.61
sp|Q56310|CHEA_THEMA Chemotaxis protein cheA 32 1.4
>sp|Q12460|SIK1_YEAST SIK1 protein (Nucleolar protein NOP56)
Length = 504
Score = 53.9 bits (128), Expect = 4e-07
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Frame = +2
Query: 152 CDITKNVAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDS 331
C+ VAPNL+ L+GE + ++LIS AGSL LS+ ++T+ L +
Sbjct: 293 CEKMHTVAPNLSELIGE-----------VIGARLISHAGSLTNLSKQAASTVQILGAEKA 341
Query: 332 LLR----KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFG 475
L R KGN K +SK S+ L++K ++ASR+D +S + S+ FG
Sbjct: 342 LFRALKTKGNTPKYGLIYHSGFISKASAKNKGRISRYLANKCSMASRIDNYSEEPSNVFG 401
Query: 476 RKLSYHSQCELKSWAKKKGFKLEKNETAVQ 565
L Q E + G KNE A+Q
Sbjct: 402 SVLK--KQVEQRLEFYNTGKPTLKNELAIQ 429
>sp|Q9D6Z1|NOP56_MOUSE Nucleolar protein Nop56 (Nucleolar protein 5A)
Length = 580
Score = 44.7 bits (104), Expect = 3e-04
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Frame = +2
Query: 170 VAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSLLR--- 340
VAP+L+ L+GE+ ++LI+ AGSL L++ P++T+ L +L R
Sbjct: 292 VAPSLSALIGEAV-----------GARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340
Query: 341 -KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFGRKL 484
+GN K + + S+ L++K ++ASR+D FS + FG KL
Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKL 397
>sp|Q5RA29|NOP56_PONPY Nucleolar protein Nop56 (Nucleolar protein 5A)
Length = 594
Score = 44.7 bits (104), Expect = 3e-04
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Frame = +2
Query: 170 VAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSLLR--- 340
VAP+L+ L+GE+ ++LI+ AGSL L++ P++T+ L +L R
Sbjct: 292 VAPSLSALIGEAV-----------GARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340
Query: 341 -KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFGRKL 484
+GN K + + S+ L++K ++ASR+D FS + FG KL
Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKL 397
>sp|Q95K50|NOP56_MACFA Nucleolar protein Nop56 (Nucleolar protein 5A)
Length = 594
Score = 44.7 bits (104), Expect = 3e-04
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Frame = +2
Query: 170 VAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSLLR--- 340
VAP+L+ L+GE+ ++LI+ AGSL L++ P++T+ L +L R
Sbjct: 292 VAPSLSALIGEAV-----------GARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340
Query: 341 -KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFGRKL 484
+GN K + + S+ L++K ++ASR+D FS + FG KL
Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKL 397
>sp|O00567|NOP56_HUMAN Nucleolar protein Nop56 (Nucleolar protein 5A)
Length = 594
Score = 44.7 bits (104), Expect = 3e-04
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Frame = +2
Query: 170 VAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSLLR--- 340
VAP+L+ L+GE+ ++LI+ AGSL L++ P++T+ L +L R
Sbjct: 292 VAPSLSALIGEAV-----------GARLIAHAGSLTNLAKYPASTVQILGAEKALFRALK 340
Query: 341 -KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFGRKL 484
+GN K + + S+ L++K ++ASR+D FS + FG KL
Sbjct: 341 TRGNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKL 397
>sp|O04656|Y5714_ARATH Hypothetical protein At5g27140
Length = 435
Score = 42.0 bits (97), Expect = 0.002
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
Frame = +2
Query: 101 DDLLKFSSDIEKCEILTCDITKN----VAPNLNFLLGESEHNPSSKDDFLRASKLISTAG 268
D +L + D + L CD KN +APNL L+GE L ++LIS G
Sbjct: 214 DQVLSIAED----KTLLCDDLKNKMNKIAPNLTALVGE-----------LVGARLISHCG 258
Query: 269 SLKKLSELPSTTIHTLTFTDSLLRKGNFKK------------VPRNEKDKLLSKESKILS 412
SL LS+LP +TI L +L + K+ + R + K ++ L+
Sbjct: 259 SLWNLSKLPWSTIQILGAEKTLYKALKTKQATPKYGLIYHAPLVRQAAPENKGKIARSLA 318
Query: 413 DKAALASRVDYFSGQSSDDFG 475
K+ALA R D F + G
Sbjct: 319 AKSALAIRCDAFGNGQDNTMG 339
>sp|Q21276|YZVL_CAEEL Hypothetical protein K07C5.4 in chromosome V
Length = 486
Score = 38.5 bits (88), Expect = 0.019
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Frame = +2
Query: 155 DITKNVAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSL 334
D + AP+L+ L+GE ++LIS AGSL L++ P++T+ L +L
Sbjct: 293 DRMDHCAPSLSALIGEQV-----------GARLISHAGSLTNLAKYPASTVQILGAEKAL 341
Query: 335 LR----KGNFKKVPRNEKDKLLSKE--------SKILSDKAALASRVDYFSGQSSDDFGR 478
R + N K + K S+ L++K ++A+RVD FS +G
Sbjct: 342 FRALKTRSNTPKYGLLFHSSFIGKAGTKNKGRVSRYLANKCSIAARVDCFSETPVSTYGE 401
Query: 479 KL 484
L
Sbjct: 402 FL 403
>sp|Q12499|NOP58_YEAST Nucleolar protein NOP58 (Nucleolar protein NOP5)
Length = 511
Score = 34.7 bits (78), Expect = 0.27
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 12/137 (8%)
Frame = +2
Query: 101 DDLLKFSSDIEKCEILTCDITKNVAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKK 280
+ +++F++ E+ K +APNL L+GE L ++LI+ +GSL
Sbjct: 260 EQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGE-----------LVGARLIAHSGSLIS 308
Query: 281 LSELPSTTIHTLTFTDSLLRKGNFK------------KVPRNEKDKLLSKESKILSDKAA 424
L++ P++TI L +L R K + K K +++L+ KAA
Sbjct: 309 LAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAA 368
Query: 425 LASRVDYFSGQSSDDFG 475
++ R D + + DD G
Sbjct: 369 VSLRYDALA-EDRDDSG 384
>sp|O04658|Y5712_ARATH Hypothetical protein At5g27120
Length = 439
Score = 33.5 bits (75), Expect = 0.61
Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Frame = +2
Query: 170 VAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTTIHTLTFTDSLLRKGN 349
+APNL L+GE L ++LIS GSL L++ P +T+ L +L R
Sbjct: 280 IAPNLTALVGE-----------LVGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALK 328
Query: 350 FK------------KVPRNEKDKLLSKESKILSDKAALASRVDYFSGQSSDD 469
K V K K S+ L+ K+ LA R D G S D+
Sbjct: 329 TKHATPKYGLIFHASVVGQAAPKNKGKISRSLAAKSVLAIRCDAL-GDSQDN 379
>sp|Q56310|CHEA_THEMA Chemotaxis protein cheA
Length = 671
Score = 32.3 bits (72), Expect = 1.4
Identities = 41/140 (29%), Positives = 59/140 (42%), Gaps = 6/140 (4%)
Frame = +2
Query: 155 DITKNVAPNLNFLLGESEHNPSSKDDFLRASKLISTAGSLKKLSELPSTT--IHTLTFTD 328
D TK NLN L E E NP + A + + T + S HTL +
Sbjct: 11 DETKEYLQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTL---E 67
Query: 329 SLLRKGNFKKVPRNEKDKLLSK-ESKILSDKAALASRVDYFSGQSSDDFGRKLSYHSQCE 505
++L K RN + K+ S KI + + VD + SDD G + S
Sbjct: 68 NILDKA------RNSEIKITSDLLDKIFAGVDMITRMVDKIVSEGSDDIGENIDVFSD-T 120
Query: 506 LKSWA---KKKGFKLEKNET 556
+KS+A K+K ++ KNET
Sbjct: 121 IKSFASSGKEKPSEI-KNET 139
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,173,362
Number of Sequences: 369166
Number of extensions: 1144997
Number of successful extensions: 3524
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3523
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)